Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006445.1

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Forward (+)

29183 .. 31945

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006445.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgtcgtttcatgaggcgccaacacagagtaaacatttcgatacattatccaaaacaggtttcagtccagctgaaagctcaaaagagcaaatggcttcgcctttgccttcatctctctctcacttctcactcctctccaaacccgcaccgccccaaaaccaccaccgccgcctcctcctagccccgacccgacccgcgtcttccgggttccaatgccgggccggaaccgggttcttcaaccggctcggacgcctcataaaggagaaggccaagagcgacgtggataagctcttctccgggttctccaagacccgcgacaatctcgccgtcatcgacgagctcctcctctactggaacctcgccgacaccgatcgagtcctcgacgagcttgaagaggctctgctggtatcggattttgggcccaagatcaccattaagattgtggagagtttgagggaggatatagtagctgggaagctcaagtctggaagtgaaataaaggaggcgttgaagaagaatgtgctggatttgttgactatagacgagaaaactgagcttcaacttggatacaggaaaccggctgtggttatggttgttggggttaatggaggtgggaagacaacgtctctcggaaagctggcttatagattaaagaatgaaggggcaaaggtattgatggcagcaggggatacgtttcgagctgctgccggtgagcagctggagatatgggctgagaggactgggtgtgagatagttatggctgaaaaagagaaggccaaagcagcaacagttatttctcaggctgtgaagagagggaaagaacaaggttatgatattgtcttatgcgatacctctggacgtctgcacactaattacagcttgatggaagagttgattgcatgtaagaaagctgcaggcaaagtcatgcctggtgctcctaatgagatcctacaagttctggatgggaccactggtttaaatatgcttccacaagcaagagaattcaatgaaattgttgggataactggtttgattttgacaaagcttgatggttctgcaagaggtggctgtgtggttagtgtggtaaatgagcttggcatccctgtaaagtttgtgggagttggtgaaagtgtagaagacctacaaccctttgatgcagaggcttttgtgaatgccatattttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

395

Amino Acids

42.72

Weight (kDa)

6.63

Isoelectric Point (pI)

30.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	862
AccB1I	GGYRCC	1 cut(s)	16
AccII	CGCG	2 cut(s)	197, 315
AciI	CCGC	6 cut(s)	144, 149, 166, 169, 195, 313
AclWI	GGATC	1 cut(s)	940
AcsI	RAATTY	1 cut(s)	1001
AcyI	GRCGYC	3 cut(s)	17, 250, 859
AfiI	CCNNNNNNNGG	3 cut(s)	217, 228, 259
AgsI	TTSAA	5 cut(s)	238, 392, 511, 560, 1006
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	928
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
Alw21I	GWGCWC	2 cut(s)	342, 937
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	1 cut(s)	940
AoxI	GGCC	4 cut(s)	219, 267, 419, 774
ApaI	GGGCCC	1 cut(s)	423
ApeKI	GCWGC	6 cut(s)	680, 701, 704, 715, 782, 911
ApoI	RAATTY	1 cut(s)	1001
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	4 cut(s)	219, 419, 420, 966
AsuC2I	CCSGG	4 cut(s)	205, 218, 229, 298
AsuHPI	GGTGA	3 cut(s)	421, 722, 1136
AvaII	GGWCC	1 cut(s)	966
BaeGI	GKGCMC	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	342, 423
BbsI	GAAGAC	3 cut(s)	192, 623, 1143
Bbv12I	GWGCWC	2 cut(s)	342, 937
BbvI	GCAGC	6 cut(s)	688, 691, 692, 727, 794, 898
BccI	CCATC	4 cut(s)	670, 877, 956, 1043
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	930
BciVI	GTATCC	2 cut(s)	560, 682
BcnI	CCSGG	4 cut(s)	205, 218, 229, 298
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	537, 912
BfoI	RGCGCY	1 cut(s)	20
BfuI	GTATCC	2 cut(s)	560, 682
BisI	GCNGC	7 cut(s)	169, 681, 702, 705, 716, 783, 912
BlsI	GCNGC	7 cut(s)	170, 682, 703, 706, 717, 784, 913
Bme1390I	CCNGG	5 cut(s)	205, 218, 229, 298, 930
Bme18I	GGWCC	1 cut(s)	966
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	4 cut(s)	219, 419, 420, 966
BmiI	GGNNCC	6 cut(s)	18, 209, 226, 356, 421, 967
BmrFI	CCNGG	5 cut(s)	205, 218, 229, 298, 930
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	2 cut(s)	1107, 1144
BmuI	ACTGGG	1 cut(s)	750
BoxI	GACNNNNGTC	1 cut(s)	196
BpiI	GAAGAC	3 cut(s)	192, 623, 1143
BpmI	CTGGAG	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	4 cut(s)	205, 218, 229, 298
BsaHI	GRCGYC	3 cut(s)	17, 250, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 228, 259
Bse118I	RCCGGY	3 cut(s)	240, 577, 707
Bse1I	ACTGG	4 cut(s)	356, 745, 976, 1030
BseBI	CCWGG	1 cut(s)	930
BseGI	GGATG	2 cut(s)	967, 1098
BseLI	CCNNNNNNNGG	3 cut(s)	217, 228, 259
BseMII	CTCAG	3 cut(s)	543, 723, 812
BseNI	ACTGG	4 cut(s)	356, 745, 976, 1030
BseRI	GAGGAG	4 cut(s)	122, 164, 332, 335
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	6 cut(s)	688, 691, 692, 727, 794, 898
BseYI	CCCAGC	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	848
Bsh1236I	CGCG	2 cut(s)	197, 315
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	221, 269, 421, 776
BshNI	GGYRCC	1 cut(s)	16
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	2 cut(s)	342, 937
BsiSI	CCGG	8 cut(s)	204, 217, 222, 228, 241, 297, 578, 708
BslFI	GGGAC	1 cut(s)	979
BslI	CCNNNNNNNGG	3 cut(s)	217, 228, 259
BsmAI	GTCTC	1 cut(s)	630
BsmBI	CGTCTC	1 cut(s)	630
BsmFI	GGGAC	1 cut(s)	979
BsmI	GAATGC	1 cut(s)	1177
BsnI	GGCC	4 cut(s)	221, 269, 421, 776
Bsp120I	GGGCCC	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	342, 423, 937
Bsp143I	GATC	3 cut(s)	370, 426, 945
BspACI	CCGC	6 cut(s)	144, 149, 166, 169, 195, 313
BspANI	GGCC	4 cut(s)	221, 269, 421, 776
BspCNI	CTCAG	3 cut(s)	544, 724, 811
BspFNI	CGCG	2 cut(s)	197, 315
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	6 cut(s)	18, 209, 226, 356, 421, 967
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	1 cut(s)	940
BspQI	GCTCTTC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	16
BsrFI	RCCGGY	3 cut(s)	240, 577, 707
BsrI	ACTGG	4 cut(s)	356, 745, 976, 1030
BssAI	RCCGGY	3 cut(s)	240, 577, 707
BssMI	GATC	3 cut(s)	370, 426, 945
BssNI	GRCGYC	3 cut(s)	17, 250, 859
Bst2UI	CCWGG	1 cut(s)	930
Bst4CI	ACNGT	1 cut(s)	790
Bst6I	CTCTTC	4 cut(s)	296, 387, 803, 882
BstACI	GRCGYC	3 cut(s)	17, 250, 859
BstC8I	GCNNGC	2 cut(s)	639, 916
BstDEI	CTNAG	3 cut(s)	552, 732, 798
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	967, 1098
BstFNI	CGCG	2 cut(s)	197, 315
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	373, 429, 948
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	3 cut(s)	370, 426, 945
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNI	CCWGG	1 cut(s)	930
BstNSI	RCATGY	1 cut(s)	903
BstPAI	GACNNNNGTC	1 cut(s)	196
BstSCI	CCNGG	5 cut(s)	203, 216, 227, 296, 928
BstSFI	CTRYAG	2 cut(s)	537, 912
BstSLI	GKGCMC	1 cut(s)	423
BstUI	CGCG	2 cut(s)	197, 315
BstV1I	GCAGC	6 cut(s)	688, 691, 692, 727, 794, 898
BstV2I	GAAGAC	3 cut(s)	192, 623, 1143
BstX2I	RGATCY	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	945
BsuI	GTATCC	2 cut(s)	560, 682
BsuRI	GGCC	4 cut(s)	221, 269, 421, 776
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	967, 1098
BtsIMutI	CAGTG	1 cut(s)	969
Cac8I	GCNNGC	2 cut(s)	639, 916
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	3 cut(s)	240, 577, 707
Cfr13I	GGNCC	4 cut(s)	219, 419, 420, 966
CseI	GACGC	2 cut(s)	186, 258
CviAII	CATG	3 cut(s)	11, 900, 925
DdeI	CTNAG	3 cut(s)	552, 732, 798
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	3 cut(s)	372, 428, 947
DpnII	GATC	3 cut(s)	370, 426, 945
DraI	TTTAAA	1 cut(s)	978
Eam1104I	CTCTTC	4 cut(s)	296, 387, 803, 882
EarI	CTCTTC	4 cut(s)	296, 387, 803, 882
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	2 cut(s)	342, 423
Eco47I	GGWCC	1 cut(s)	966
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	1001
EcoRII	CCWGG	1 cut(s)	928
EcoT38I	GRGCYC	2 cut(s)	342, 423
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	630
FaeI	CATG	3 cut(s)	14, 903, 928
FaqI	GGGAC	1 cut(s)	979
FatI	CATG	3 cut(s)	10, 899, 924
FauI	CCCGC	3 cut(s)	151, 202, 320
Fnu4HI	GCNGC	7 cut(s)	169, 681, 702, 705, 716, 783, 912
FokI	GGATG	2 cut(s)	974, 1085
FriOI	GRGCYC	2 cut(s)	342, 423
Fsp4HI	GCNGC	7 cut(s)	169, 681, 702, 705, 716, 783, 912
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	7 cut(s)	169, 681, 702, 705, 716, 783, 912
GsaI	CCCAGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	740
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	4 cut(s)	221, 269, 421, 776
HapII	CCGG	8 cut(s)	204, 217, 222, 228, 241, 297, 578, 708
HgaI	GACGC	2 cut(s)	186, 258
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	3 cut(s)	17, 250, 859
Hin1II	CATG	3 cut(s)	14, 903, 928
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	1 cut(s)	375
HpaII	CCGG	8 cut(s)	204, 217, 222, 228, 241, 297, 578, 708
HphI	GGTGA	3 cut(s)	421, 722, 1136
Hpy166II	GTNNAC	2 cut(s)	32, 534
Hpy188I	TCNGA	3 cut(s)	248, 412, 632
Hpy188III	TCNNGA	4 cut(s)	11, 486, 855, 959
Hpy8I	GTNNAC	2 cut(s)	32, 534
Hpy99I	CGWCG	3 cut(s)	281, 338, 386
HpyAV	CCTTC	4 cut(s)	117, 259, 653, 766
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4IV	ACGT	4 cut(s)	279, 623, 692, 859
HpyCH4V	TGCA	5 cut(s)	865, 899, 914, 1058, 1157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpyF3I	CTNAG	3 cut(s)	552, 732, 798
HpySE526I	ACGT	4 cut(s)	279, 623, 692, 859
Hsp92I	GRCGYC	3 cut(s)	17, 250, 859
Hsp92II	CATG	3 cut(s)	14, 903, 928
HspAI	GCGC	1 cut(s)	17
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	370, 426, 945
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	2 cut(s)	345, 940
Lsp1109I	GCAGC	6 cut(s)	688, 691, 692, 727, 794, 898
LweI	GCATC	2 cut(s)	1107, 1144
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	4 cut(s)	279, 623, 692, 859
MalI	GATC	3 cut(s)	372, 428, 947
MboI	GATC	3 cut(s)	370, 426, 945
MflI	RGATCY	1 cut(s)	945
MhlI	GDGCHC	3 cut(s)	342, 423, 937
MluCI	AATT	3 cut(s)	871, 1001, 1011
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	384
MseI	TTAA	4 cut(s)	435, 603, 650, 977
MspA1I	CMGCKG	2 cut(s)	71, 718
MspI	CCGG	8 cut(s)	204, 217, 222, 228, 241, 297, 578, 708
MspR9I	CCNGG	5 cut(s)	205, 218, 229, 298, 930
Mva1269I	GAATGC	1 cut(s)	1177
MvaI	CCWGG	1 cut(s)	930
MvnI	CGCG	2 cut(s)	197, 315
MwoI	GCNNNNNNNGC	1 cut(s)	782
NarI	GGCGCC	1 cut(s)	17
NciI	CCSGG	4 cut(s)	205, 218, 229, 298
NdeII	GATC	3 cut(s)	370, 426, 945
NlaIII	CATG	3 cut(s)	14, 903, 928
NlaIV	GGNNCC	6 cut(s)	18, 209, 226, 356, 421, 967
NspI	RCATGY	1 cut(s)	903
PagI	TCATGA	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 366
PctI	GAATGC	1 cut(s)	1177
PflFI	GACNNNGTC	1 cut(s)	622
PkrI	GCNGC	7 cut(s)	170, 682, 703, 706, 717, 784, 913
Ple19I	CGATCG	1 cut(s)	373
PleI	GAGTC	1 cut(s)	383
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	928
PspN4I	GGNNCC	6 cut(s)	18, 209, 226, 356, 421, 967
PspOMI	GGGCCC	1 cut(s)	419
PspPI	GGNCC	4 cut(s)	219, 419, 420, 966
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	945
PsyI	GACNNNGTC	1 cut(s)	622
PvuI	CGATCG	1 cut(s)	373
PvuII	CAGCTG	2 cut(s)	71, 718
SacI	GAGCTC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	4 cut(s)	435, 603, 650, 977
SatI	GCNGC	7 cut(s)	169, 681, 702, 705, 716, 783, 912
Sau3AI	GATC	3 cut(s)	370, 426, 945
Sau96I	GGNCC	4 cut(s)	219, 419, 420, 966
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	5 cut(s)	205, 218, 229, 298, 930
SduI	GDGCHC	3 cut(s)	342, 423, 937
SfaNI	GCATC	2 cut(s)	1107, 1144
SfcI	CTRYAG	2 cut(s)	537, 912
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	871, 1001, 1011
SsiI	CCGC	6 cut(s)	144, 149, 166, 169, 195, 313
SspDI	GGCGCC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	5 cut(s)	203, 216, 227, 296, 928
TaaI	ACNGT	1 cut(s)	790
TaiI	ACGT	4 cut(s)	282, 626, 695, 862
TaqI	TCGA	5 cut(s)	39, 333, 373, 381, 697
TasI	AATT	3 cut(s)	871, 1001, 1011
TauI	GCSGC	1 cut(s)	171
Tru1I	TTAA	4 cut(s)	435, 603, 650, 977
Tru9I	TTAA	4 cut(s)	435, 603, 650, 977
TscAI	CASTG	1 cut(s)	976
TseI	GCWGC	6 cut(s)	680, 701, 704, 715, 782, 911
TspDTI	ATGAA	4 cut(s)	99, 672, 1023, 1173
TspRI	CASTG	1 cut(s)	976
Tth111I	GACNNNGTC	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	966
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	1001
XceI	RCATGY	1 cut(s)	903
XcmI	CCANNNNNNNNNTGG	2 cut(s)	277, 439
XspI	CTAG	1 cut(s)	179
ZraI	GACGTC	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.