Rroxscaffold_4G00302380

Cell division protein FtsY homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
22781366 .. 22784518
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302380.1

Sequence Viewer

Length: 1131 bp
ATGGCTTCGCCTTTGCCTTCTTCCCTCTCTCACTTCTCACTCCTCTCCAAACCCGCACCGCCCCAAAACCACCGCCGCCTCCTCCTAGCCCCGACCCGACCCGCGTCTTCCGGGTTCCAATGCCGGGCCGGAACCGGGTTCTTCAACCGTCTCGGGCGCCTCATAAAGGAGAAGGCCAAGAGCGACGTGGATAAGCTCTTCTCCGGGTTCTCCAAGACCCGCGACAATCTCGCCGTCATCGACGAGCTCCTCCTCTACTGGAACCTCGCCGACACCGATCGCGTCCTCGACGAGCTTGAAGAGGCTCTGCTGGTATCGGATTTTGGGCCCAAGATCACCATTAAGATTGTGGAGAGTTTGAGGGAGGATATAGTAGCTGGGAAGCTCAAGTCTGGAAGTGAAATAAAGGAGGCGTTGAAGAAGAATGTTCTGGATTTGTTGACTATAGAAGGGAAAACTGAACTTCAACTTGGATACAGGAAACCGGCTGTGGTTATGATTGTTGGGGTTAATGGAGGTGGGAAGACAACGTCTCTCGGAAAGCTGGCTTATAGATTAAAGAATGAAGGGGCAAAGGTATTGATGGCAGCAGGGGATACGTTTCGAGCTGCTGCTGGTGACCAGCTGGAGATATGGGCTGAGAGGACTGGGTGTGAGATAGTTGTGGCTGACAAAGAGAAGGCCAAAGCAGCAACAGTTATTTCTCAGGCTGTGAAGAGAGGGAAAGAACAAGGTTATGATATTGTCTTATGCGACACCTCTGGACGTCTGCACACTAATTACAGCTTGATGGAAGACTTGATTGCATGTAAGAAAGCTGTAGGCAAAGTCATGCCAGGTGCCCCTAATGAGATCCTACAAGTTCTGGATGGGACCACTGGTTTAAACATGCTTCCACAAGCAAGAGAATTCAATGAAGTAACAATCTTATCCTTGGTCTTCTTAGATAAGAGGATTGTTGGGATAACTGGTTTGATTTTGACAAAGCTTGATGGTTCTGCAAGAGGTGGCTGTGTGGTTAGTGTGGTAAATGAGCTTGGCATCCCTGTAAAGTTTGTGGGAGTTGGTGAAAGTGTAGAAGACCTACAACCCTTTGATGCGGAGGCTTTTGTGAATGCTATATTTTCATAG

Protein Analysis

376

Amino Acids

40.55

Weight (kDa)

8.14

Isoelectric Point (pI)

25.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 92 - 141 1.6e-09 SRP54-type protein, helical bundle domain
nSTAND_NTPase5 PF25199 157 - 252 4.4e-06 Novel STAND NTPase 5
SRP54 PF00448 162 - 375 1.3e-65 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 769
AccB1I GGYRCC 2 cut(s) 156, 839
AccII CGCG 3 cut(s) 104, 222, 282
AciI CCGC 7 cut(s) 54, 59, 73, 76, 102, 220, 1100
AclWI GGATC 1 cut(s) 847
AcsI RAATTY 1 cut(s) 908
AcyI GRCGYC 2 cut(s) 157, 766
AfiI CCNNNNNNNGG 3 cut(s) 124, 135, 166
AgsI TTSAA 5 cut(s) 145, 299, 418, 467, 913
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 835
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 2 cut(s) 155, 537
AlwI GGATC 1 cut(s) 847
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 4 cut(s) 126, 174, 326, 681
ApaI GGGCCC 1 cut(s) 330
ApeKI GCWGC 4 cut(s) 587, 608, 611, 689
ApoI RAATTY 1 cut(s) 908
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 4 cut(s) 126, 326, 327, 873
AsuC2I CCSGG 4 cut(s) 112, 125, 136, 205
AsuHPI GGTGA 3 cut(s) 328, 629, 1079
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 873
BaeGI GKGCMC 2 cut(s) 330, 844
BanI GGYRCC 2 cut(s) 156, 839
BanII GRGCYC 2 cut(s) 249, 330
BbsI GAAGAC 5 cut(s) 99, 530, 801, 931, 1086
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 595, 598, 599, 701
BccI CCATC 4 cut(s) 577, 784, 863, 986
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 837
BciVI GTATCC 2 cut(s) 467, 589
BcnI CCSGG 4 cut(s) 112, 125, 136, 205
BcoDI GTCTC 2 cut(s) 155, 537
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 444, 819
BfoI RGCGCY 1 cut(s) 160
BfuI GTATCC 2 cut(s) 467, 589
BisI GCNGC 5 cut(s) 76, 588, 609, 612, 690
BlsI GCNGC 5 cut(s) 77, 589, 610, 613, 691
Bme1390I CCNGG 5 cut(s) 112, 125, 136, 205, 837
Bme18I GGWCC 1 cut(s) 873
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 4 cut(s) 126, 326, 327, 873
BmiI GGNNCC 7 cut(s) 116, 133, 158, 263, 328, 841, 874
BmrFI CCNGG 5 cut(s) 112, 125, 136, 205, 837
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 2 cut(s) 1050, 1087
BmuI ACTGGG 1 cut(s) 657
BoxI GACNNNNGTC 1 cut(s) 103
BpiI GAAGAC 5 cut(s) 99, 530, 801, 931, 1086
BpmI CTGGAG 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 4 cut(s) 112, 125, 136, 205
BsaHI GRCGYC 2 cut(s) 157, 766
BsaJI CCNNGG 1 cut(s) 933
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 135, 166
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 4 cut(s) 263, 652, 883, 973
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 933
BseGI GGATG 2 cut(s) 874, 1041
BseLI CCNNNNNNNGG 3 cut(s) 124, 135, 166
BseMII CTCAG 2 cut(s) 630, 719
BseNI ACTGG 4 cut(s) 263, 652, 883, 973
BseRI GAGGAG 4 cut(s) 32, 71, 239, 242
BseSI GKGCMC 2 cut(s) 330, 844
BseXI GCAGC 4 cut(s) 595, 598, 599, 701
BseYI CCCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 755
Bsh1236I CGCG 3 cut(s) 104, 222, 282
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 128, 176, 328, 683
BshNI GGYRCC 2 cut(s) 156, 839
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 6 cut(s) 111, 124, 129, 135, 204, 485
BslFI GGGAC 1 cut(s) 886
BslI CCNNNNNNNGG 3 cut(s) 124, 135, 166
BsmAI GTCTC 2 cut(s) 155, 537
BsmBI CGTCTC 2 cut(s) 155, 537
BsmFI GGGAC 1 cut(s) 886
BsmI GAATGC 1 cut(s) 1120
BsnI GGCC 4 cut(s) 128, 176, 328, 683
BsoBI CYCGRG 1 cut(s) 152
Bsp120I GGGCCC 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 249, 330, 844
Bsp143I GATC 3 cut(s) 277, 333, 852
BspACI CCGC 7 cut(s) 54, 59, 73, 76, 102, 220, 1100
BspANI GGCC 4 cut(s) 128, 176, 328, 683
BspCNI CTCAG 2 cut(s) 631, 718
BspFNI CGCG 3 cut(s) 104, 222, 282
BspLI GGNNCC 7 cut(s) 116, 133, 158, 263, 328, 841, 874
BspPI GGATC 1 cut(s) 847
BspQI GCTCTTC 1 cut(s) 203
BspT107I GGYRCC 2 cut(s) 156, 839
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 4 cut(s) 263, 652, 883, 973
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 933
BssMI GATC 3 cut(s) 277, 333, 852
BssNI GRCGYC 2 cut(s) 157, 766
BssT1I CCWWGG 1 cut(s) 933
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 2 cut(s) 149, 697
Bst6I CTCTTC 3 cut(s) 203, 294, 710
BstACI GRCGYC 2 cut(s) 157, 766
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 639, 705, 943
BstEII GGTNACC 1 cut(s) 617
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 874, 1041
BstFNI CGCG 3 cut(s) 104, 222, 282
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 3 cut(s) 280, 336, 855
BstMAI GTCTC 2 cut(s) 155, 537
BstMBI GATC 3 cut(s) 277, 333, 852
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstNI CCWGG 1 cut(s) 837
BstNSI RCATGY 2 cut(s) 810, 892
BstPAI GACNNNNGTC 1 cut(s) 103
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 5 cut(s) 110, 123, 134, 203, 835
BstSFI CTRYAG 2 cut(s) 444, 819
BstSLI GKGCMC 2 cut(s) 330, 844
BstUI CGCG 3 cut(s) 104, 222, 282
BstV1I GCAGC 4 cut(s) 595, 598, 599, 701
BstV2I GAAGAC 5 cut(s) 99, 530, 801, 931, 1086
BstX2I RGATCY 1 cut(s) 852
BstYI RGATCY 1 cut(s) 852
BsuI GTATCC 2 cut(s) 467, 589
BsuRI GGCC 4 cut(s) 128, 176, 328, 683
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 874, 1041
BtsIMutI CAGTG 1 cut(s) 876
Cac8I GCNNGC 1 cut(s) 546
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 4 cut(s) 126, 326, 327, 873
CseI GACGC 2 cut(s) 93, 271
CviAII CATG 3 cut(s) 807, 832, 889
DdeI CTNAG 3 cut(s) 639, 705, 943
DinI GGCGCC 1 cut(s) 158
DpnI GATC 3 cut(s) 279, 335, 854
DpnII GATC 3 cut(s) 277, 333, 852
DraI TTTAAA 1 cut(s) 885
Eam1104I CTCTTC 3 cut(s) 203, 294, 710
EarI CTCTTC 3 cut(s) 203, 294, 710
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 933
Eco24I GRGCYC 2 cut(s) 249, 330
Eco47I GGWCC 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 933
EcoT38I GRGCYC 2 cut(s) 249, 330
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 933
Esp3I CGTCTC 2 cut(s) 155, 537
FaeI CATG 3 cut(s) 810, 835, 892
FaqI GGGAC 1 cut(s) 886
FatI CATG 3 cut(s) 806, 831, 888
FauI CCCGC 3 cut(s) 61, 109, 227
Fnu4HI GCNGC 5 cut(s) 76, 588, 609, 612, 690
FokI GGATG 2 cut(s) 881, 1028
FriOI GRGCYC 2 cut(s) 249, 330
Fsp4HI GCNGC 5 cut(s) 76, 588, 609, 612, 690
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 158
GluI GCNGC 5 cut(s) 76, 588, 609, 612, 690
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 4 cut(s) 128, 176, 328, 683
HapII CCGG 6 cut(s) 111, 124, 129, 135, 204, 485
HgaI GACGC 2 cut(s) 93, 271
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 2 cut(s) 157, 766
Hin1II CATG 3 cut(s) 810, 835, 892
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 986
HpaII CCGG 6 cut(s) 111, 124, 129, 135, 204, 485
HphI GGTGA 3 cut(s) 328, 629, 1079
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 2 cut(s) 319, 539
Hpy188III TCNNGA 4 cut(s) 393, 431, 762, 866
Hpy8I GTNNAC 1 cut(s) 441
Hpy99I CGWCG 3 cut(s) 188, 245, 293
HpyAV CCTTC 5 cut(s) 27, 166, 443, 560, 673
HpyCH4III ACNGT 2 cut(s) 149, 697
HpyCH4IV ACGT 4 cut(s) 186, 530, 599, 766
HpyCH4V TGCA 3 cut(s) 772, 806, 1001
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
HpyF3I CTNAG 3 cut(s) 639, 705, 943
HpySE526I ACGT 4 cut(s) 186, 530, 599, 766
Hsp92I GRCGYC 2 cut(s) 157, 766
Hsp92II CATG 3 cut(s) 810, 835, 892
HspAI GCGC 1 cut(s) 157
KasI GGCGCC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 277, 333, 852
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 252
Lsp1109I GCAGC 4 cut(s) 595, 598, 599, 701
LweI GCATC 2 cut(s) 1050, 1087
MaeI CTAG 1 cut(s) 86
MaeII ACGT 4 cut(s) 186, 530, 599, 766
MaeIII GTNAC 2 cut(s) 617, 919
MalI GATC 3 cut(s) 279, 335, 854
MboI GATC 3 cut(s) 277, 333, 852
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 3 cut(s) 249, 330, 844
MluCI AATT 2 cut(s) 778, 908
Mly113I GGCGCC 1 cut(s) 157
MseI TTAA 4 cut(s) 342, 510, 557, 884
MspA1I CMGCKG 1 cut(s) 625
MspI CCGG 6 cut(s) 111, 124, 129, 135, 204, 485
MspR9I CCNGG 5 cut(s) 112, 125, 136, 205, 837
MssI GTTTAAAC 1 cut(s) 885
Mva1269I GAATGC 1 cut(s) 1120
MvaI CCWGG 1 cut(s) 837
MvnI CGCG 3 cut(s) 104, 222, 282
MwoI GCNNNNNNNGC 1 cut(s) 689
NarI GGCGCC 1 cut(s) 157
NciI CCSGG 4 cut(s) 112, 125, 136, 205
NdeII GATC 3 cut(s) 277, 333, 852
NlaIII CATG 3 cut(s) 810, 835, 892
NlaIV GGNNCC 7 cut(s) 116, 133, 158, 263, 328, 841, 874
NmuCI GTSAC 1 cut(s) 617
NspI RCATGY 2 cut(s) 810, 892
PciSI GCTCTTC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 273
PctI GAATGC 1 cut(s) 1120
PflFI GACNNNGTC 1 cut(s) 529
PkrI GCNGC 5 cut(s) 77, 589, 610, 613, 691
Ple19I CGATCG 1 cut(s) 280
PluTI GGCGCC 1 cut(s) 160
PmeI GTTTAAAC 1 cut(s) 885
PshAI GACNNNNGTC 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 835
PspEI GGTNACC 1 cut(s) 617
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 7 cut(s) 116, 133, 158, 263, 328, 841, 874
PspOMI GGGCCC 1 cut(s) 326
PspPI GGNCC 4 cut(s) 126, 326, 327, 873
PsuI RGATCY 1 cut(s) 852
PsyI GACNNNGTC 1 cut(s) 529
PvuI CGATCG 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 625
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 4 cut(s) 342, 510, 557, 884
SatI GCNGC 5 cut(s) 76, 588, 609, 612, 690
Sau3AI GATC 3 cut(s) 277, 333, 852
Sau96I GGNCC 4 cut(s) 126, 326, 327, 873
ScrFI CCNGG 5 cut(s) 112, 125, 136, 205, 837
SduI GDGCHC 3 cut(s) 249, 330, 844
SfaNI GCATC 2 cut(s) 1050, 1087
SfcI CTRYAG 2 cut(s) 444, 819
SfoI GGCGCC 1 cut(s) 158
SinI GGWCC 1 cut(s) 873
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 778, 908
SsiI CCGC 7 cut(s) 54, 59, 73, 76, 102, 220, 1100
SspDI GGCGCC 1 cut(s) 156
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 5 cut(s) 110, 123, 134, 203, 835
StyI CCWWGG 1 cut(s) 933
TaaI ACNGT 2 cut(s) 149, 697
TaiI ACGT 4 cut(s) 189, 533, 602, 769
TaqI TCGA 3 cut(s) 240, 288, 604
TasI AATT 2 cut(s) 778, 908
TauI GCSGC 1 cut(s) 78
Tru1I TTAA 4 cut(s) 342, 510, 557, 884
Tru9I TTAA 4 cut(s) 342, 510, 557, 884
TscAI CASTG 1 cut(s) 883
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 4 cut(s) 587, 608, 611, 689
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 3 cut(s) 579, 930, 1116
TspRI CASTG 1 cut(s) 883
Tth111I GACNNNGTC 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 873
XagI CCTNNNNNAGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 908
XceI RCATGY 2 cut(s) 810, 892
XcmI CCANNNNNNNNNTGG 2 cut(s) 184, 346
XspI CTAG 1 cut(s) 86
ZraI GACGTC 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.