Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Forward (+)

45778051 .. 45781209

Gene Structure 3159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTTCGCCTTTGCCTTCATCTCTCTCTCACTTCTCACTCCTCTCCAAACCCGCACCGCCCCAAAACCACCACCGCCGCCTCCTCCTAGCCCCGACCCGACCCGCGTCTTCCGGGTTCCAATGCCGGGCCGGAACCGGGTTCTTCAACCGCCTCGGACGCCTCATAAAGGAGAAGGCCAAGAGCGACGTGGATAAGCTCTTCTCCGGGTTCTCCAAGACCCGCGACAATCTCGCCGTCATCGACGAGCTCCTCCTCTACTGGAACCTTGCCGACACCGATCGAGTCCTCGACGAGCTTGAAGAGGCCCTGCTGGTATCGGATTTTGGGCCCAAGATCACCATTAAGATTGTGGAGAGTTTGAGGGAGGATATAGTAGCTGGGAAGCTCAAGTCTGGAAGTGAAATAAAGGAGGCGTTGAAGAAGAATGTGCTGGATTTGTTGACTATAGAAGGGAAAACTGAGCTACAACTTGGATACAGGAAACCGGCTGTGGTTATGATTGTTGGGGTTAATGGAGGTGGGAAGACAACGTCTCTCGGAAAGCTGGCTTATAGATTAAAGAATGAAGGGGCAAAGGTATTGATGGCAGCAGGGGATACGTTTCGAGCTGCTGCCGGTGACCAGCTGGAGATATGGGCTGAGAGGACTGGGTGTGAGATAGTTGTGGCTGAAAAAGAGAAGGCCAAAGCAGCAACAGTTATTTCTCAGGCTGTGAAGAGAGGGAAAGAACAAGGTTATGATATTGTCTTATGCGATACTTCTGGACGTCTGCACACTAATTACAGCTTGATGGAAGACTTGATTGCATGTAAGAAAGCTGCAGGCAAAGTCATGCCTGGTGCTCCTAATGTAAGCTCAGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

289

Amino Acids

31.23

Weight (kDa)

9.21

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54_N	PF02881	93 - 142	1.1e-09	SRP54-type protein, helical bundle domain
nSTAND_NTPase5	PF25199	158 - 252	7.1e-06	Novel STAND NTPase 5
SRP54	PF00448	163 - 275	1.3e-37	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	772
AccII	CGCG	2 cut(s)	107, 225
AciI	CCGC	7 cut(s)	54, 59, 76, 79, 105, 151, 223
AcyI	GRCGYC	2 cut(s)	160, 769
AfiI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
AgsI	TTSAA	3 cut(s)	148, 302, 421
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	838
Alw21I	GWGCWC	2 cut(s)	252, 847
Alw26I	GTCTC	1 cut(s)	540
AoxI	GGCC	5 cut(s)	129, 177, 306, 329, 684
ApaI	GGGCCC	1 cut(s)	333
ApeKI	GCWGC	5 cut(s)	590, 611, 614, 692, 821
AspS9I	GGNCC	4 cut(s)	129, 307, 329, 330
AsuC2I	CCSGG	4 cut(s)	115, 128, 139, 208
AsuHPI	GGTGA	2 cut(s)	331, 632
BaeGI	GKGCMC	1 cut(s)	333
BanII	GRGCYC	2 cut(s)	252, 333
BbsI	GAAGAC	3 cut(s)	102, 533, 804
Bbv12I	GWGCWC	2 cut(s)	252, 847
BbvI	GCAGC	5 cut(s)	598, 601, 602, 704, 808
BccI	CCATC	2 cut(s)	580, 787
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	840
BciVI	GTATCC	2 cut(s)	470, 592
BcnI	CCSGG	4 cut(s)	115, 128, 139, 208
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	447, 822
BfuI	GTATCC	2 cut(s)	470, 592
BisI	GCNGC	6 cut(s)	79, 591, 612, 615, 693, 822
BlpI	GCTNAGC	1 cut(s)	859
BlsI	GCNGC	6 cut(s)	80, 592, 613, 616, 694, 823
Bme1390I	CCNGG	5 cut(s)	115, 128, 139, 208, 840
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	4 cut(s)	129, 307, 329, 330
BmiI	GGNNCC	4 cut(s)	119, 136, 266, 331
BmrFI	CCNGG	5 cut(s)	115, 128, 139, 208, 840
BmrI	ACTGGG	1 cut(s)	660
BmuI	ACTGGG	1 cut(s)	660
BoxI	GACNNNNGTC	1 cut(s)	106
BpiI	GAAGAC	3 cut(s)	102, 533, 804
BpmI	CTGGAG	1 cut(s)	650
Bpu1102I	GCTNAGC	1 cut(s)	859
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	4 cut(s)	115, 128, 139, 208
BsaHI	GRCGYC	2 cut(s)	160, 769
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 138, 169
Bse118I	RCCGGY	2 cut(s)	487, 617
Bse1I	ACTGG	2 cut(s)	266, 655
BseBI	CCWGG	1 cut(s)	840
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
BseMII	CTCAG	3 cut(s)	453, 633, 722
BseNI	ACTGG	2 cut(s)	266, 655
BseRI	GAGGAG	4 cut(s)	32, 74, 242, 245
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	5 cut(s)	598, 601, 602, 704, 808
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	2 cut(s)	107, 225
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	5 cut(s)	131, 179, 308, 331, 686
BsiEI	CGRYCG	1 cut(s)	283
BsiHKAI	GWGCWC	2 cut(s)	252, 847
BsiSI	CCGG	7 cut(s)	114, 127, 132, 138, 207, 488, 618
BslI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
BsmAI	GTCTC	1 cut(s)	540
BsmBI	CGTCTC	1 cut(s)	540
BsnI	GGCC	5 cut(s)	131, 179, 308, 331, 686
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	3 cut(s)	252, 333, 847
Bsp143I	GATC	2 cut(s)	280, 336
Bsp1720I	GCTNAGC	1 cut(s)	859
BspACI	CCGC	7 cut(s)	54, 59, 76, 79, 105, 151, 223
BspANI	GGCC	5 cut(s)	131, 179, 308, 331, 686
BspCNI	CTCAG	3 cut(s)	454, 634, 721
BspFNI	CGCG	2 cut(s)	107, 225
BspLI	GGNNCC	4 cut(s)	119, 136, 266, 331
BspMAI	CTGCAG	1 cut(s)	826
BspQI	GCTCTTC	1 cut(s)	206
BsrFI	RCCGGY	2 cut(s)	487, 617
BsrI	ACTGG	2 cut(s)	266, 655
BssAI	RCCGGY	2 cut(s)	487, 617
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	280, 336
BssNI	GRCGYC	2 cut(s)	160, 769
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	1 cut(s)	700
Bst6I	CTCTTC	3 cut(s)	206, 297, 713
BstACI	GRCGYC	2 cut(s)	160, 769
BstC8I	GCNNGC	2 cut(s)	549, 826
BstDEI	CTNAG	4 cut(s)	462, 642, 708, 859
BstEII	GGTNACC	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstFNI	CGCG	2 cut(s)	107, 225
BstKTI	GATC	2 cut(s)	283, 339
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	2 cut(s)	280, 336
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 692
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	1 cut(s)	813
BstPAI	GACNNNNGTC	1 cut(s)	106
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	5 cut(s)	113, 126, 137, 206, 838
BstSFI	CTRYAG	2 cut(s)	447, 822
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	2 cut(s)	107, 225
BstV1I	GCAGC	5 cut(s)	598, 601, 602, 704, 808
BstV2I	GAAGAC	3 cut(s)	102, 533, 804
BsuI	GTATCC	2 cut(s)	470, 592
BsuRI	GGCC	5 cut(s)	131, 179, 308, 331, 686
BtrI	CACGTC	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	549, 826
Cfr10I	RCCGGY	2 cut(s)	487, 617
Cfr13I	GGNCC	4 cut(s)	129, 307, 329, 330
CseI	GACGC	2 cut(s)	96, 168
CviAII	CATG	2 cut(s)	810, 835
DdeI	CTNAG	4 cut(s)	462, 642, 708, 859
DpnI	GATC	2 cut(s)	282, 338
DpnII	GATC	2 cut(s)	280, 336
Eam1104I	CTCTTC	3 cut(s)	206, 297, 713
EarI	CTCTTC	3 cut(s)	206, 297, 713
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	2 cut(s)	252, 333
Eco53kI	GAGCTC	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	620
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	838
EcoT38I	GRGCYC	2 cut(s)	252, 333
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	2 cut(s)	813, 838
FatI	CATG	2 cut(s)	809, 834
FauI	CCCGC	3 cut(s)	61, 112, 230
Fnu4HI	GCNGC	6 cut(s)	79, 591, 612, 615, 693, 822
FriOI	GRGCYC	2 cut(s)	252, 333
Fsp4HI	GCNGC	6 cut(s)	79, 591, 612, 615, 693, 822
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	6 cut(s)	79, 591, 612, 615, 693, 822
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	5 cut(s)	131, 179, 308, 331, 686
HapII	CCGG	7 cut(s)	114, 127, 132, 138, 207, 488, 618
HgaI	GACGC	2 cut(s)	96, 168
Hin1I	GRCGYC	2 cut(s)	160, 769
Hin1II	CATG	2 cut(s)	813, 838
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	7 cut(s)	114, 127, 132, 138, 207, 488, 618
HphI	GGTGA	2 cut(s)	331, 632
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	3 cut(s)	158, 322, 542
Hpy188III	TCNNGA	2 cut(s)	396, 765
Hpy8I	GTNNAC	1 cut(s)	444
Hpy99I	CGWCG	3 cut(s)	191, 248, 296
HpyAV	CCTTC	5 cut(s)	27, 169, 446, 563, 676
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4IV	ACGT	4 cut(s)	189, 533, 602, 769
HpyCH4V	TGCA	3 cut(s)	775, 809, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 692
HpyF3I	CTNAG	4 cut(s)	462, 642, 708, 859
HpySE526I	ACGT	4 cut(s)	189, 533, 602, 769
Hsp92I	GRCGYC	2 cut(s)	160, 769
Hsp92II	CATG	2 cut(s)	813, 838
Kzo9I	GATC	2 cut(s)	280, 336
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	2 cut(s)	255, 850
Lsp1109I	GCAGC	5 cut(s)	598, 601, 602, 704, 808
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	4 cut(s)	189, 533, 602, 769
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	2 cut(s)	282, 338
MboI	GATC	2 cut(s)	280, 336
MboII	GAAGA	9 cut(s)	102, 136, 193, 314, 433, 436, 538, 730, 809
MhlI	GDGCHC	3 cut(s)	252, 333, 847
MluCI	AATT	1 cut(s)	781
MlyI	GAGTC	1 cut(s)	294
MseI	TTAA	3 cut(s)	345, 513, 560
MspA1I	CMGCKG	2 cut(s)	628, 863
MspI	CCGG	7 cut(s)	114, 127, 132, 138, 207, 488, 618
MspR9I	CCNGG	5 cut(s)	115, 128, 139, 208, 840
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	2 cut(s)	107, 225
MwoI	GCNNNNNNNGC	2 cut(s)	159, 692
NciI	CCSGG	4 cut(s)	115, 128, 139, 208
NdeII	GATC	2 cut(s)	280, 336
NlaIII	CATG	2 cut(s)	813, 838
NlaIV	GGNNCC	4 cut(s)	119, 136, 266, 331
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	532
PkrI	GCNGC	6 cut(s)	80, 592, 613, 616, 694, 823
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PshAI	GACNNNNGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	838
PspEI	GGTNACC	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	4 cut(s)	119, 136, 266, 331
PspOMI	GGGCCC	1 cut(s)	329
PspPI	GGNCC	4 cut(s)	129, 307, 329, 330
PstI	CTGCAG	1 cut(s)	826
PsyI	GACNNNGTC	1 cut(s)	532
PvuI	CGATCG	1 cut(s)	283
PvuII	CAGCTG	2 cut(s)	628, 863
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	345, 513, 560
SatI	GCNGC	6 cut(s)	79, 591, 612, 615, 693, 822
Sau3AI	GATC	2 cut(s)	280, 336
Sau96I	GGNCC	4 cut(s)	129, 307, 329, 330
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	5 cut(s)	115, 128, 139, 208, 840
SduI	GDGCHC	3 cut(s)	252, 333, 847
SfcI	CTRYAG	2 cut(s)	447, 822
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	1 cut(s)	781
SsiI	CCGC	7 cut(s)	54, 59, 76, 79, 105, 151, 223
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	5 cut(s)	113, 126, 137, 206, 838
TaaI	ACNGT	1 cut(s)	700
TaiI	ACGT	4 cut(s)	192, 536, 605, 772
TaqI	TCGA	4 cut(s)	243, 283, 291, 607
TasI	AATT	1 cut(s)	781
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	3 cut(s)	345, 513, 560
Tru9I	TTAA	3 cut(s)	345, 513, 560
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	5 cut(s)	590, 611, 614, 692, 821
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	2 cut(s)	9, 582
Tth111I	GACNNNGTC	1 cut(s)	532
XagI	CCTNNNNNAGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	813
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 349
XspI	CTAG	1 cut(s)	89
ZraI	GACGTC	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.