Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Reverse (-)

17796094 .. 17800755

Gene Structure 4662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1126100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCAGGATGCGTTGAAGAAGAGTGTGCTTGATTTGTTAACTATTAAAGGGAAAACCGAACTTCAACTCGGATACAGGAAACCAGCTGTGGTTATGATTGTTGGCGTTAATGGAGGCGGGAAAACAACATCTCTTGGAAAGCTCGCTTATAGATTGAAGAATGGAGGGGCAAATGTATTAATGGCTGCAGGGGATACCTTTCGAGCAGCTGCATGTGACCAGCTGGAGATATGGGCCGAGAGGACTGTGTGTGAGATTGTTGTGGCTGAGAGAGAGAAGGCCAAAGCACCATCAGGGTATGATATTGTCTTATGCGACACCTCTGGATGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGCAAGAAAGCTGTGACCAAAGTCATGCCTGGTGCTCCTAATGAGATCCTACAAATTCTGGATGGGACCACAGGCTTAGACATGCTTCCGCAAGCAAGAGAATTCAATGAAATTGTTGGTATAACTGGTATGATTTTGACAAAACTTGACGGTTCTGCTAGAGGAGGCTGTGTGGTCAGTGTGGTGAATGAGCTCGGCATCCCTGTAAAGTTTGTGGGTGTTGGTGAAGGCGTAGAAGACCTCCAACCGTTTGATCCAGAGGCCTTTGTTAATGCCATATTTTCAGAGTCCGAATGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

224

Amino Acids

23.75

Weight (kDa)

5.09

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	28 - 217	1.6e-61	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	117, 458
AclWI	GGATC	2 cut(s)	409, 617
AcsI	RAATTY	2 cut(s)	423, 470
AfiI	CCNNNNNNNGG	1 cut(s)	666
AgsI	TTSAA	4 cut(s)	16, 65, 157, 475
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	7 cut(s)	86, 142, 209, 223, 348, 380, 562
AluI	AGCT	7 cut(s)	86, 142, 209, 223, 348, 380, 562
Alw21I	GWGCWC	2 cut(s)	406, 564
AlwI	GGATC	2 cut(s)	409, 617
AoxI	GGCC	3 cut(s)	234, 279, 630
ApeKI	GCWGC	3 cut(s)	185, 206, 209
ApoI	RAATTY	2 cut(s)	423, 470
AseI	ATTAAT	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	234, 435
AsuHPI	GGTGA	2 cut(s)	565, 605
AvaII	GGWCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	2 cut(s)	406, 564
BbvI	GCAGC	3 cut(s)	172, 196, 218
BccI	CCATC	3 cut(s)	298, 346, 425
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	2 cut(s)	65, 187
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	2 cut(s)	65, 187
BisI	GCNGC	3 cut(s)	186, 207, 210
BlsI	GCNGC	3 cut(s)	187, 208, 211
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	234, 435
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	576
BoxI	GACNNNNGTC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse1I	ACTGG	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	399
BseGI	GGATG	4 cut(s)	13, 332, 436, 567
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	3 cut(s)	172, 196, 218
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	236, 281, 632
BsiHKAI	GWGCWC	2 cut(s)	406, 564
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	236, 281, 632
Bsp1286I	GDGCHC	2 cut(s)	406, 564
Bsp143I	GATC	2 cut(s)	414, 622
BspACI	CCGC	2 cut(s)	117, 458
BspANI	GGCC	3 cut(s)	236, 281, 632
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	409, 617
BsrI	ACTGG	1 cut(s)	499
BssMI	GATC	2 cut(s)	414, 622
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	247, 521, 618
Bst6I	CTCTTC	2 cut(s)	14, 351
BstC8I	GCNNGC	3 cut(s)	144, 370, 462
BstDEI	CTNAG	2 cut(s)	267, 445
BstF5I	GGATG	4 cut(s)	13, 332, 436, 567
BstKTI	GATC	2 cut(s)	417, 625
BstMBI	GATC	2 cut(s)	414, 622
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	3 cut(s)	216, 372, 454
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	172, 196, 218
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuI	GTATCC	2 cut(s)	65, 187
BsuRI	GGCC	3 cut(s)	236, 281, 632
BtsCI	GGATG	4 cut(s)	13, 332, 436, 567
BtsIMutI	CAGTG	1 cut(s)	553
Cac8I	GCNNGC	3 cut(s)	144, 370, 462
Cfr13I	GGNCC	2 cut(s)	234, 435
CviAII	CATG	4 cut(s)	213, 369, 394, 451
DdeI	CTNAG	2 cut(s)	267, 445
DpnI	GATC	2 cut(s)	416, 624
DpnII	GATC	2 cut(s)	414, 622
Eam1104I	CTCTTC	2 cut(s)	14, 351
EarI	CTCTTC	2 cut(s)	14, 351
Ecl136II	GAGCTC	1 cut(s)	562
Eco147I	AGGCCT	1 cut(s)	632
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	4 cut(s)	216, 372, 397, 454
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	4 cut(s)	212, 368, 393, 450
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	186, 207, 210
FokI	GGATG	4 cut(s)	20, 339, 443, 554
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	186, 207, 210
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	3 cut(s)	186, 207, 210
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	236, 281, 632
Hin1II	CATG	4 cut(s)	216, 372, 397, 454
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	656
HpaI	GTTAAC	1 cut(s)	39
HphI	GGTGA	2 cut(s)	565, 605
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	3 cut(s)	71, 655, 661
Hpy188III	TCNNGA	3 cut(s)	324, 428, 626
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	2 cut(s)	271, 590
HpyCH4III	ACNGT	3 cut(s)	247, 521, 618
HpyCH4V	TGCA	6 cut(s)	4, 188, 212, 334, 368, 372
HpyF3I	CTNAG	2 cut(s)	267, 445
Hsp92II	CATG	4 cut(s)	216, 372, 397, 454
KspAI	GTTAAC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	414, 622
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	3 cut(s)	172, 196, 218
LweI	GCATC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	215, 382
MalI	GATC	2 cut(s)	416, 624
MboI	GATC	2 cut(s)	414, 622
MboII	GAAGA	5 cut(s)	28, 31, 169, 368, 617
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	2 cut(s)	406, 564
MluCI	AATT	4 cut(s)	340, 423, 470, 480
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	8 cut(s)	107, 158, 234, 331, 524, 527, 620, 622
MseI	TTAA	5 cut(s)	38, 45, 108, 179, 639
MspA1I	CMGCKG	3 cut(s)	86, 209, 223
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	414, 622
NlaIII	CATG	4 cut(s)	216, 372, 397, 454
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	2 cut(s)	262, 543
NmuCI	GTSAC	2 cut(s)	215, 382
NspI	RCATGY	3 cut(s)	216, 372, 454
PaeI	GCATGC	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	632
PkrI	GCNGC	3 cut(s)	187, 208, 211
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PshAI	GACNNNNGTC	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	2 cut(s)	234, 435
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	3 cut(s)	86, 209, 223
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	5 cut(s)	38, 45, 108, 179, 639
SatI	GCNGC	3 cut(s)	186, 207, 210
Sau3AI	GATC	2 cut(s)	414, 622
Sau96I	GGNCC	2 cut(s)	234, 435
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	406, 564
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	435
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	4 cut(s)	340, 423, 470, 480
SseBI	AGGCCT	1 cut(s)	632
SsiI	CCGC	2 cut(s)	117, 458
SspMI	CTAG	1 cut(s)	528
SstI	GAGCTC	1 cut(s)	564
StuI	AGGCCT	1 cut(s)	632
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	3 cut(s)	247, 521, 618
TaqI	TCGA	1 cut(s)	202
TasI	AATT	4 cut(s)	340, 423, 470, 480
Tru1I	TTAA	5 cut(s)	38, 45, 108, 179, 639
Tru9I	TTAA	5 cut(s)	38, 45, 108, 179, 639
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	2 cut(s)	215, 382
TseI	GCWGC	3 cut(s)	185, 206, 209
Tsp45I	GTSAC	2 cut(s)	215, 382
TspDTI	ATGAA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	435
VspI	ATTAAT	1 cut(s)	179
XapI	RAATTY	2 cut(s)	423, 470
XceI	RCATGY	3 cut(s)	216, 372, 454
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.