Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452643.1

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1498

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452643.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 604 bp

gaaatgtttaataattgatgatgatctgataaactatcctcaatcaggaaagctggcttatagattgaaaaatgaaggggcaaaggtgttgattgcagcaggggatacgtttcgagctgctgccggtgaccagctggagatatgggctgagcggactgggtgtgagatagttgtggctgaaaaagagaaagccaaagcagcaacggttatttctcaggctgtgaagagagggaaagaacaaggttatgatattgtcttatgtgacacctctggacgtctgcacactaattacagcttgatggaagagttgattgcatgtaagaaagctgtaggcaaagtcatgcctggtgcccctaatgagatcctacaagttctggatgggaccactggtttaaacatgcttccacaagcaagagaattcaatgaaattgttgggataactggtttgattttgacaaagcttgatggttctgcaagaggtggctgtgtggttagtgtggtaaatgagctcggcatccctgtaaagtttgtgggagttggtgaaagtgtagaagacctacaaccctttgatgcagaggcttttgtgaatgccatattttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

200

Amino Acids

21.37

Weight (kDa)

4.95

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	68, 422
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	7 cut(s)	53, 117, 134, 295, 327, 461, 509
AluI	AGCT	7 cut(s)	53, 117, 134, 295, 327, 461, 509
Alw21I	GWGCWC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	356
ApeKI	GCWGC	4 cut(s)	96, 117, 120, 198
ApoI	RAATTY	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	138, 552
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	4 cut(s)	104, 107, 108, 210
BccI	CCATC	3 cut(s)	293, 372, 459
BciT130I	CCWGG	1 cut(s)	346
BciVI	GTATCC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	98
BisI	GCNGC	4 cut(s)	97, 118, 121, 199
BlpI	GCTNAGC	1 cut(s)	148
BlsI	GCNGC	4 cut(s)	98, 119, 122, 200
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	350, 383
BmrFI	CCNGG	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	523, 560
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	3 cut(s)	161, 392, 446
Bse8I	GATNNNNATC	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	346
BseGI	GGATG	2 cut(s)	383, 514
BseJI	GATNNNNATC	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	139, 228
BseNI	ACTGG	3 cut(s)	161, 392, 446
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	104, 107, 108, 210
BsgI	GTGCAG	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	593
Bsp1286I	GDGCHC	2 cut(s)	353, 511
Bsp143I	GATC	2 cut(s)	23, 361
Bsp1720I	GCTNAGC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	140, 227
BspLI	GGNNCC	2 cut(s)	350, 383
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	348
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	3 cut(s)	161, 392, 446
BssAI	RCCGGY	1 cut(s)	123
BssMI	GATC	2 cut(s)	23, 361
BssNI	GRCGYC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	219, 298
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	148, 214
BstEII	GGTNACC	1 cut(s)	126
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	383, 514
BstKTI	GATC	2 cut(s)	26, 364
BstMBI	GATC	2 cut(s)	23, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	319, 401
BstPI	GGTNACC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	4 cut(s)	104, 107, 108, 210
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	383, 514
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	382
CviAII	CATG	3 cut(s)	316, 341, 398
DdeI	CTNAG	2 cut(s)	148, 214
DpnI	GATC	2 cut(s)	25, 363
DpnII	GATC	2 cut(s)	23, 361
DraI	TTTAAA	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	219, 298
EarI	CTCTTC	2 cut(s)	219, 298
Ecl136II	GAGCTC	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	509
Eco91I	GGTNACC	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	509
EcoNI	CCTNNNNNAGG	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	511
FaeI	CATG	3 cut(s)	319, 344, 401
FaiI	YATR	9 cut(s)	61, 143, 247, 260, 317, 342, 399, 594, 602
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	3 cut(s)	315, 340, 397
Fnu4HI	GCNGC	4 cut(s)	97, 118, 121, 199
FokI	GGATG	2 cut(s)	390, 501
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	4 cut(s)	97, 118, 121, 199
GluI	GCNGC	4 cut(s)	97, 118, 121, 199
GsuI	CTGGAG	1 cut(s)	156
HapII	CCGG	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	319, 344, 401
HindIII	AAGCTT	1 cut(s)	459
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	138, 552
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	3 cut(s)	46, 271, 375
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	108, 275
HpyCH4V	TGCA	5 cut(s)	96, 281, 315, 474, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	2 cut(s)	148, 214
HpySE526I	ACGT	2 cut(s)	108, 275
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	319, 344, 401
Kzo9I	GATC	2 cut(s)	23, 361
Lsp1109I	GCAGC	4 cut(s)	104, 107, 108, 210
LweI	GCATC	2 cut(s)	523, 560
MaeII	ACGT	2 cut(s)	108, 275
MaeIII	GTNAC	2 cut(s)	126, 261
MalI	GATC	2 cut(s)	25, 363
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	2 cut(s)	23, 361
MboII	GAAGA	3 cut(s)	236, 315, 564
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	2 cut(s)	353, 511
MluCI	AATT	4 cut(s)	13, 287, 417, 427
MnlI	CCTC	5 cut(s)	49, 222, 278, 471, 569
MseI	TTAA	2 cut(s)	9, 393
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	346
MssI	GTTTAAAC	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeII	GATC	2 cut(s)	23, 361
NlaIII	CATG	3 cut(s)	319, 344, 401
NlaIV	GGNNCC	2 cut(s)	350, 383
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	126, 261
NspI	RCATGY	2 cut(s)	319, 401
PctI	GAATGC	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	98, 119, 122, 200
PmeI	GTTTAAAC	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	344
PspEI	GGTNACC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	350, 383
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	2 cut(s)	9, 393
SatI	GCNGC	4 cut(s)	97, 118, 121, 199
Sau3AI	GATC	2 cut(s)	23, 361
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	2 cut(s)	353, 511
SfaNI	GCATC	2 cut(s)	523, 560
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	382
Sse9I	AATT	4 cut(s)	13, 287, 417, 427
SsiI	CCGC	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	2 cut(s)	111, 278
TaqI	TCGA	1 cut(s)	113
TasI	AATT	4 cut(s)	13, 287, 417, 427
Tru1I	TTAA	2 cut(s)	9, 393
Tru9I	TTAA	2 cut(s)	9, 393
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	2 cut(s)	126, 261
TseI	GCWGC	4 cut(s)	96, 117, 120, 198
Tsp45I	GTSAC	2 cut(s)	126, 261
TspDTI	ATGAA	3 cut(s)	88, 439, 589
TspRI	CASTG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	43
XapI	RAATTY	1 cut(s)	417
XceI	RCATGY	2 cut(s)	319, 401
ZraI	GACGTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.