RchiOBHm_Chr1g0352821

Cell division protein FtsY homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009942
Physical Location & Seq
Forward (+)
46224514 .. 46227029
2516 bp
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UTR
Exon/CDS
Intron
PRQ57848

Sequence Viewer

Length: 612 bp
ATGATTGTTGGGGTTAATGGAGGTGGGAAGACAACGTCTCTCGGAAAGCTGGCTTATAGATTGAAAAATGAAAGGGCAAAGGTATTGATTGCAGCAGGGGATACGTTTCGAGCTGCTGCCGGTGACCAGCTGGAGATATGGGCTGAGAGGACTGGCTGTGAGATAGTTGTGGCTGAAAAAGAGAAGGCCAAAGCAGCAACAGCTAGGCAACTTGAATGTGACATGGCTGTGAAGAGAGGGAAGGAACAAGGTTATGACATTGTCTTATGTGACACCTCTGGACGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGCAAGAAAGCTGTAGGCAAAGTCATGCCTGGTGCCCCTAATGAGATCCTACAAGTTCTGGATGGGACCACTGGTTTAAACATGCTTCCACAAGCACGAGAATTCAATGAAATTGTTGGTATAACTGGTTTGATTTTGACAAAGCTTGATGGTTCTGCAAGAGGTGGCTGTGTGGTTAGTGTGGTAAATGAGCTTGGCATCCCTGTAAAGTTTGTGGGAGTTGGTGAAAGTGTAGAAGACCTACAACCCTTTGATGCAGAGGCTTTTGTGAATGCCATATTTTCATAG

Protein Analysis

203

Amino Acids

21.57

Weight (kDa)

5.38

Isoelectric Point (pI)

26.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 1 - 202 7.7e-68 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 356
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 283
AgsI TTSAA 3 cut(s) 64, 215, 430
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 8 cut(s) 49, 113, 130, 203, 303, 335, 469, 517
AluI AGCT 8 cut(s) 49, 113, 130, 203, 303, 335, 469, 517
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 364
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 4 cut(s) 92, 113, 116, 194
ApoI RAATTY 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 2 cut(s) 134, 560
AvaII GGWCC 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 356
BauI CACGAG 1 cut(s) 420
BbsI GAAGAC 2 cut(s) 35, 567
BbvI GCAGC 4 cut(s) 100, 103, 104, 206
BccI CCATC 3 cut(s) 301, 380, 467
BciT130I CCWGG 1 cut(s) 354
BciVI GTATCC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 336
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 4 cut(s) 93, 114, 117, 195
BlsI GCNGC 4 cut(s) 94, 115, 118, 196
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 358, 391
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 531, 568
BpiI GAAGAC 2 cut(s) 35, 567
BpmI CTGGAG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 157, 400, 454
BseBI CCWGG 1 cut(s) 354
BseGI GGATG 2 cut(s) 391, 522
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 3 cut(s) 157, 400, 454
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 4 cut(s) 100, 103, 104, 206
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 1 cut(s) 369
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 358, 391
BspPI GGATC 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 3 cut(s) 157, 400, 454
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 1 cut(s) 369
BssNI GRCGYC 1 cut(s) 283
BssSI CACGAG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 2 cut(s) 227, 306
BstACI GRCGYC 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 51, 325
BstDEI CTNAG 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 2 cut(s) 391, 522
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 369
BstMWI GCNNNNNNNGC 2 cut(s) 194, 200
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 2 cut(s) 327, 409
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 361
BstV1I GCAGC 4 cut(s) 100, 103, 104, 206
BstV2I GAAGAC 2 cut(s) 35, 567
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 391, 522
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 2 cut(s) 51, 325
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 390
CviAII CATG 4 cut(s) 223, 324, 349, 406
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
DraI TTTAAA 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 227, 306
EarI CTCTTC 2 cut(s) 227, 306
Eco47I GGWCC 1 cut(s) 390
Eco91I GGTNACC 1 cut(s) 122
EcoO65I GGTNACC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 4 cut(s) 226, 327, 352, 409
FaqI GGGAC 1 cut(s) 403
FatI CATG 4 cut(s) 222, 323, 348, 405
Fnu4HI GCNGC 4 cut(s) 93, 114, 117, 195
FokI GGATG 2 cut(s) 398, 509
Fsp4HI GCNGC 4 cut(s) 93, 114, 117, 195
FspBI CTAG 1 cut(s) 204
GluI GCNGC 4 cut(s) 93, 114, 117, 195
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 4 cut(s) 226, 327, 352, 409
HindIII AAGCTT 1 cut(s) 467
HpaII CCGG 1 cut(s) 120
HphI GGTGA 2 cut(s) 134, 560
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 279, 383
HpyAV CCTTC 2 cut(s) 178, 235
HpyCH4IV ACGT 3 cut(s) 35, 104, 283
HpyCH4V TGCA 6 cut(s) 92, 289, 323, 327, 482, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 200
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 3 cut(s) 35, 104, 283
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 4 cut(s) 226, 327, 352, 409
Kzo9I GATC 1 cut(s) 369
Lsp1109I GCAGC 4 cut(s) 100, 103, 104, 206
LweI GCATC 2 cut(s) 531, 568
MaeI CTAG 1 cut(s) 204
MaeII ACGT 3 cut(s) 35, 104, 283
MaeIII GTNAC 3 cut(s) 122, 218, 269
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 4 cut(s) 40, 244, 323, 572
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 3 cut(s) 295, 425, 435
MnlI CCTC 6 cut(s) 14, 141, 230, 286, 479, 577
MseI TTAA 2 cut(s) 15, 401
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 354
MssI GTTTAAAC 1 cut(s) 402
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 194, 200
NdeII GATC 1 cut(s) 369
NlaIII CATG 4 cut(s) 226, 327, 352, 409
NlaIV GGNNCC 2 cut(s) 358, 391
NmuCI GTSAC 3 cut(s) 122, 218, 269
NspI RCATGY 2 cut(s) 327, 409
PaeI GCATGC 1 cut(s) 327
PctI GAATGC 1 cut(s) 601
PflFI GACNNNGTC 2 cut(s) 34, 260
PkrI GCNGC 4 cut(s) 94, 115, 118, 196
PmeI GTTTAAAC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 358, 391
PspPI GGNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 369
PsyI GACNNNGTC 2 cut(s) 34, 260
PvuII CAGCTG 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 2 cut(s) 15, 401
SatI GCNGC 4 cut(s) 93, 114, 117, 195
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 1 cut(s) 390
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 2 cut(s) 531, 568
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 227
SphI GCATGC 1 cut(s) 327
Sse9I AATT 3 cut(s) 295, 425, 435
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 352
TaiI ACGT 3 cut(s) 38, 107, 286
TaqI TCGA 1 cut(s) 109
TasI AATT 3 cut(s) 295, 425, 435
Tru1I TTAA 2 cut(s) 15, 401
Tru9I TTAA 2 cut(s) 15, 401
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 3 cut(s) 122, 218, 269
TseI GCWGC 4 cut(s) 92, 113, 116, 194
Tsp45I GTSAC 3 cut(s) 122, 218, 269
TspDTI ATGAA 3 cut(s) 84, 447, 597
TspRI CASTG 1 cut(s) 400
Tth111I GACNNNGTC 2 cut(s) 34, 260
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 1 cut(s) 425
XceI RCATGY 2 cut(s) 327, 409
XspI CTAG 1 cut(s) 204
ZraI GACGTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.