Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Forward (+)

12033914 .. 12037623

Gene Structure 3710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13420.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTTCGCCTTTGCCTTCATCTCTCTCTCACTTCTCACTCCTCTCCAAACCCGCCCCGCTCCCACACCAAAACCACCGCCTCCTCCTAGCCCCGACCCGACCCGGATCTTCCGGGCTCCAATGCCGCGCCGGAACCGGGTTCTTCAACCGCCTCGGCCGCCTCATCAAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGACAACCTCGCCGTCATCGACGAGCTCCTCCTCTACTGGAACCTCGCCGACACCGATCGAGTCCTCGACGAGCTCGAAGAGGCTCTGCTGGTATCGGATTTCGGGCCGAAGATCACCATCAAGATTGTGGAGAGCTTGAGGGAGGACATTGTAGCTGGGAAGCTCAAGTCTGGAAGTGAAATTAAGGAGGCGTTGAAGAAGAATGTTCTCGATTTGTTGACTATAAAAGGGAAAACTGAGCTTCAGCTTGGATACAGGAAACCGGCTGTGATTATGATTGTTGGGGTTAATGGAGGTGGGAAGACAACATCTCTTGGAAAGCTGGCTTATAGATTGAAGAATGAAGGGGCAAAGGTATTGATGGCAGCAGGGGATACTTTTCGAGCTGCTGCCGGTGACCAGCTGGAGATATGGGCTGAGAGGACTGGCTGTGAGATAGTTGTGGCGGAAAAAGAGAAGGCCAAAGCAGCAACAGTTATTTCTCAGGCTGTGAAGAGAGGGAAAGAACAAGGTTATGATATTGTCTTATGTGACACCTCCGGACGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGTAAGAAAGCTGTAGGAAAAGTCATGCCTGGTTCCCCTAATGAGATCCTACAAGTTCTGGATGGGACCACTGGTTTAAACATGCTTCCCCAAGCAAGAGAATTCAATGAAATTGTTGGGATAACTGGTTTGATTTTGACAAAACTCGATGGTTCTGCTAGAGGTGGCTGTGTGGTTAGTGTGGTAAATGAGCTTGGCATTCCTGTAAAGTTTGTGGGAGTTGGTGAAAGTGTAGAAGACCTACAACCCTTTGATGCAGAGGCTTTTGTGAATGCCATATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

366

Amino Acids

39.29

Weight (kDa)

8.15

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54_N	PF02881	93 - 142	1.4e-09	SRP54-type protein, helical bundle domain
SRP54	PF00448	163 - 328	2.4e-56	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	192, 772
AccBSI	CCGCTC	1 cut(s)	61
AccII	CGCG	2 cut(s)	129, 225
AccIII	TCCGGA	1 cut(s)	764
AciI	CCGC	8 cut(s)	54, 59, 79, 127, 151, 160, 223, 671
AclWI	GGATC	2 cut(s)	115, 850
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	911
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	2 cut(s)	189, 769
AfiI	CCNNNNNNNGG	2 cut(s)	138, 169
AgsI	TTSAA	4 cut(s)	148, 421, 562, 916
AjnI	CCWGG	1 cut(s)	838
Alw21I	GWGCWC	2 cut(s)	252, 300
AlwI	GGATC	2 cut(s)	115, 850
Aor13HI	TCCGGA	1 cut(s)	764
AoxI	GGCC	4 cut(s)	157, 177, 329, 684
ApeKI	GCWGC	4 cut(s)	590, 611, 614, 692
ApoI	RAATTY	1 cut(s)	911
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	329, 876
AsuC2I	CCSGG	3 cut(s)	105, 115, 139
AsuHPI	GGTGA	3 cut(s)	331, 632, 1046
AvaII	GGWCC	1 cut(s)	876
BanII	GRGCYC	3 cut(s)	120, 252, 300
BbsI	GAAGAC	2 cut(s)	533, 1053
Bbv12I	GWGCWC	2 cut(s)	252, 300
BbvI	GCAGC	4 cut(s)	598, 601, 602, 704
BccI	CCATC	5 cut(s)	350, 580, 787, 866, 953
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciT130I	CCWGG	1 cut(s)	840
BciVI	GTATCC	2 cut(s)	470, 592
BcnI	CCSGG	3 cut(s)	105, 115, 139
BfaI	CTAG	2 cut(s)	89, 969
BfmI	CTRYAG	1 cut(s)	822
BfuI	GTATCC	2 cut(s)	470, 592
BisI	GCNGC	6 cut(s)	127, 160, 591, 612, 615, 693
BlsI	GCNGC	6 cut(s)	128, 161, 592, 613, 616, 694
Bme1390I	CCNGG	4 cut(s)	105, 115, 139, 840
Bme18I	GGWCC	1 cut(s)	876
BmgT120I	GGNCC	2 cut(s)	329, 876
BmiI	GGNNCC	5 cut(s)	119, 136, 266, 844, 877
BmrFI	CCNGG	4 cut(s)	105, 115, 139, 840
BmsI	GCATC	1 cut(s)	1054
BpiI	GAAGAC	2 cut(s)	533, 1053
BpmI	CTGGAG	1 cut(s)	650
BpuEI	CTTGAG	2 cut(s)	374, 382
BpuMI	CCSGG	3 cut(s)	105, 115, 139
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	189, 769
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	764
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 169
Bse118I	RCCGGY	2 cut(s)	487, 617
Bse1I	ACTGG	4 cut(s)	266, 655, 886, 940
Bse8I	GATNNNNATC	1 cut(s)	341
BseAI	TCCGGA	1 cut(s)	764
BseBI	CCWGG	1 cut(s)	840
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	877
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	138, 169
BseMII	CTCAG	3 cut(s)	453, 633, 722
BseNI	ACTGG	4 cut(s)	266, 655, 886, 940
BseRI	GAGGAG	4 cut(s)	32, 74, 242, 245
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	4 cut(s)	598, 601, 602, 704
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	2 cut(s)	129, 225
Bsh1285I	CGRYCG	2 cut(s)	160, 283
BshFI	GGCC	4 cut(s)	159, 179, 331, 686
BsiEI	CGRYCG	2 cut(s)	160, 283
BsiHKAI	GWGCWC	2 cut(s)	252, 300
BsiSI	CCGG	8 cut(s)	105, 114, 132, 138, 207, 488, 618, 765
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	2 cut(s)	138, 169
BsmFI	GGGAC	1 cut(s)	889
BsmI	GAATGC	2 cut(s)	1008, 1087
BsnI	GGCC	4 cut(s)	159, 179, 331, 686
Bsp1286I	GDGCHC	3 cut(s)	120, 252, 300
Bsp13I	TCCGGA	1 cut(s)	764
Bsp143I	GATC	4 cut(s)	107, 280, 336, 855
BspACI	CCGC	8 cut(s)	54, 59, 79, 127, 151, 160, 223, 671
BspANI	GGCC	4 cut(s)	159, 179, 331, 686
BspCNI	CTCAG	3 cut(s)	454, 634, 721
BspEI	TCCGGA	1 cut(s)	764
BspFNI	CGCG	2 cut(s)	129, 225
BspLI	GGNNCC	5 cut(s)	119, 136, 266, 844, 877
BspPI	GGATC	2 cut(s)	115, 850
BspQI	GCTCTTC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	61
BsrFI	RCCGGY	2 cut(s)	487, 617
BsrI	ACTGG	4 cut(s)	266, 655, 886, 940
BssAI	RCCGGY	2 cut(s)	487, 617
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	4 cut(s)	107, 280, 336, 855
BssNI	GRCGYC	2 cut(s)	189, 769
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	1 cut(s)	700
Bst6I	CTCTTC	4 cut(s)	206, 297, 713, 792
BstACI	GRCGYC	2 cut(s)	189, 769
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	3 cut(s)	462, 642, 708
BstEII	GGTNACC	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	877
BstFNI	CGCG	2 cut(s)	129, 225
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	110, 283, 339, 858
BstMBI	GATC	4 cut(s)	107, 280, 336, 855
BstMCI	CGRYCG	2 cut(s)	160, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 692
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	2 cut(s)	813, 895
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	4 cut(s)	103, 113, 137, 838
BstSFI	CTRYAG	1 cut(s)	822
BstUI	CGCG	2 cut(s)	129, 225
BstV1I	GCAGC	4 cut(s)	598, 601, 602, 704
BstV2I	GAAGAC	2 cut(s)	533, 1053
BstX2I	RGATCY	2 cut(s)	107, 855
BstYI	RGATCY	2 cut(s)	107, 855
BstZI	CGGCCG	1 cut(s)	157
BsuI	GTATCC	2 cut(s)	470, 592
BsuRI	GGCC	4 cut(s)	159, 179, 331, 686
BtsCI	GGATG	1 cut(s)	877
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	1 cut(s)	549
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	2 cut(s)	487, 617
Cfr13I	GGNCC	2 cut(s)	329, 876
CviAII	CATG	3 cut(s)	810, 835, 892
DdeI	CTNAG	3 cut(s)	462, 642, 708
DpnI	GATC	4 cut(s)	109, 282, 338, 857
DpnII	GATC	4 cut(s)	107, 280, 336, 855
DraI	TTTAAA	1 cut(s)	888
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	4 cut(s)	206, 297, 713, 792
EarI	CTCTTC	4 cut(s)	206, 297, 713, 792
EciI	GGCGGA	1 cut(s)	686
Ecl136II	GAGCTC	2 cut(s)	250, 298
EclXI	CGGCCG	1 cut(s)	157
Eco24I	GRGCYC	3 cut(s)	120, 252, 300
Eco47I	GGWCC	1 cut(s)	876
Eco52I	CGGCCG	1 cut(s)	157
Eco53kI	GAGCTC	2 cut(s)	250, 298
Eco57I	CTGAAG	1 cut(s)	452
Eco91I	GGTNACC	1 cut(s)	620
EcoICRI	GAGCTC	2 cut(s)	250, 298
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	1 cut(s)	838
EcoT38I	GRGCYC	3 cut(s)	120, 252, 300
FaeI	CATG	3 cut(s)	813, 838, 895
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	3 cut(s)	809, 834, 891
FauI	CCCGC	3 cut(s)	61, 66, 230
Fnu4HI	GCNGC	6 cut(s)	127, 160, 591, 612, 615, 693
FokI	GGATG	1 cut(s)	884
FriOI	GRGCYC	3 cut(s)	120, 252, 300
Fsp4HI	GCNGC	6 cut(s)	127, 160, 591, 612, 615, 693
FspBI	CTAG	2 cut(s)	89, 969
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	6 cut(s)	127, 160, 591, 612, 615, 693
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	4 cut(s)	159, 179, 331, 686
HapII	CCGG	8 cut(s)	105, 114, 132, 138, 207, 488, 618, 765
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	189, 769
Hin1II	CATG	3 cut(s)	813, 838, 895
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	8 cut(s)	105, 114, 132, 138, 207, 488, 618, 765
HphI	GGTGA	3 cut(s)	331, 632, 1046
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	6 cut(s)	193, 346, 396, 434, 765, 869
Hpy8I	GTNNAC	1 cut(s)	444
Hpy99I	CGWCG	4 cut(s)	191, 194, 248, 296
HpyAV	CCTTC	4 cut(s)	27, 169, 563, 676
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4IV	ACGT	2 cut(s)	189, 769
HpyCH4V	TGCA	3 cut(s)	775, 809, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 692
HpyF3I	CTNAG	3 cut(s)	462, 642, 708
HpySE526I	ACGT	2 cut(s)	189, 769
Hsp92I	GRCGYC	2 cut(s)	189, 769
Hsp92II	CATG	3 cut(s)	813, 838, 895
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	764
Kzo9I	GATC	4 cut(s)	107, 280, 336, 855
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	3 cut(s)	66, 123, 255
Lsp1109I	GCAGC	4 cut(s)	598, 601, 602, 704
LweI	GCATC	1 cut(s)	1054
MaeI	CTAG	2 cut(s)	89, 969
MaeII	ACGT	2 cut(s)	189, 769
MaeIII	GTNAC	2 cut(s)	620, 755
MalI	GATC	4 cut(s)	109, 282, 338, 857
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	4 cut(s)	107, 280, 336, 855
MflI	RGATCY	2 cut(s)	107, 855
MhlI	GDGCHC	3 cut(s)	120, 252, 300
MluCI	AATT	4 cut(s)	405, 781, 911, 921
MlyI	GAGTC	1 cut(s)	294
MroI	TCCGGA	1 cut(s)	764
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	3 cut(s)	408, 513, 887
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	8 cut(s)	105, 114, 132, 138, 207, 488, 618, 765
MspR9I	CCNGG	4 cut(s)	105, 115, 139, 840
MssI	GTTTAAAC	1 cut(s)	888
Mva1269I	GAATGC	2 cut(s)	1008, 1087
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	2 cut(s)	129, 225
MwoI	GCNNNNNNNGC	2 cut(s)	159, 692
NciI	CCSGG	3 cut(s)	105, 115, 139
NdeII	GATC	4 cut(s)	107, 280, 336, 855
NlaIII	CATG	3 cut(s)	813, 838, 895
NlaIV	GGNNCC	5 cut(s)	119, 136, 266, 844, 877
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	620, 755
NspI	RCATGY	2 cut(s)	813, 895
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	3 cut(s)	240, 276, 297
PctI	GAATGC	2 cut(s)	1008, 1087
PdmI	GAANNNNTTC	1 cut(s)	200
PkrI	GCNGC	6 cut(s)	128, 161, 592, 613, 616, 694
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	1 cut(s)	293
PmeI	GTTTAAAC	1 cut(s)	888
PpsI	GAGTC	1 cut(s)	293
Psp124BI	GAGCTC	2 cut(s)	252, 300
Psp6I	CCWGG	1 cut(s)	838
PspEI	GGTNACC	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	5 cut(s)	119, 136, 266, 844, 877
PspPI	GGNCC	2 cut(s)	329, 876
PsuI	RGATCY	2 cut(s)	107, 855
PvuI	CGATCG	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	628
SacI	GAGCTC	2 cut(s)	252, 300
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	408, 513, 887
SatI	GCNGC	6 cut(s)	127, 160, 591, 612, 615, 693
Sau3AI	GATC	4 cut(s)	107, 280, 336, 855
Sau96I	GGNCC	2 cut(s)	329, 876
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	4 cut(s)	105, 115, 139, 840
SduI	GDGCHC	3 cut(s)	120, 252, 300
SfaNI	GCATC	1 cut(s)	1054
SfcI	CTRYAG	1 cut(s)	822
SinI	GGWCC	1 cut(s)	876
SmlI	CTYRAG	2 cut(s)	361, 389
SmoI	CTYRAG	2 cut(s)	361, 389
Sse9I	AATT	4 cut(s)	405, 781, 911, 921
SsiI	CCGC	8 cut(s)	54, 59, 79, 127, 151, 160, 223, 671
SspMI	CTAG	2 cut(s)	89, 969
SstI	GAGCTC	2 cut(s)	252, 300
StyD4I	CCNGG	4 cut(s)	103, 113, 137, 838
TaaI	ACNGT	1 cut(s)	700
TaiI	ACGT	2 cut(s)	192, 772
TaqI	TCGA	8 cut(s)	192, 243, 283, 291, 300, 435, 607, 957
TasI	AATT	4 cut(s)	405, 781, 911, 921
TauI	GCSGC	2 cut(s)	129, 162
Tru1I	TTAA	3 cut(s)	408, 513, 887
Tru9I	TTAA	3 cut(s)	408, 513, 887
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	2 cut(s)	620, 755
TseI	GCWGC	4 cut(s)	590, 611, 614, 692
Tsp45I	GTSAC	2 cut(s)	620, 755
TspDTI	ATGAA	4 cut(s)	9, 582, 933, 1083
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	876
XagI	CCTNNNNNAGG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	911
XceI	RCATGY	2 cut(s)	813, 895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	2 cut(s)	89, 969
ZraI	GACGTC	2 cut(s)	190, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.