Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Forward (+)

33325506 .. 33330293

Gene Structure 4788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0231700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3681 bp

ATGGCTCTTGTTAGAGCTGATCATGAAGCCGCCTCTTCCAACACATCTCATTCTCGATGTAGTCATCACGTTTTCTTGAGTTTCAGAGGTGAAGAAACTCGCTACACTTTTACCGATCACCTATATTCGGCCTTGGTCAACGCAGGATTTCGCACTTTCCGAGATGAGGATGAACTCGAGAGAGGAGAAGGTATCCGGCCAGAACTACAGAAAGCAATCCAACAGTCTCGAAGTTCTGTCGTTGTGATTTCTAAAGACTACGCATCTTCAGGATGGTGCCTGGACGAGCTTGTCATGATACTTGAACGCAAGAGAATCTCCGATCATATAGTTTTACCAATATTCTACGATATTGATCCATCCCATGTGAGGAAACAGAGTGGAAGTGTTGCAATAGCATTTGCTAGACATGAGAAAAAACAATCTCTGGAGAAGTTGAATAGCTGGAGGGCGGCACTTACCGAAGTTTCAGATCTAGCAGGCATGGTGCTACAAAACCAAGCTGATAGGCATGAGTCGAAGTTTATAAAGAAAATTGTTAAAGTGATTGAAGGCAAACTATGTCGCATCCCCTTAAGTGTTAGCCCTTACCTGGTCGGAATGCAGTATCAGGTTGAAAACATCATTTCATGGTTACAAGATGGATCATCTGATGTTAGCATATATGGAATTTCTGGGATTGGTGGCATTGGAAAGACAACCATTGCGCAAGTAGTTTATAACTCATTTTTCAGAAGTTTTGAAGGAAGCAGTTTCCTTGAAAACATCAGAGAAGTTTCAGAACAACCCAATGGCTTAGTTCGACTACAGAAGCAACTTCTTGCTGATATTTTGAAGGGAAGGAAAGTGAAAGTACAGAGTGTCAGTGAGGGAATAATTAAGATTAGAGATTTCATAAGCACCAAAAAAGTACTTCTTGTCCTCGATGATGTTGATCATCTAGGTCAGTTAGATGCAGTAGTTGGTATGAGAGATTGCTTTTGTCCAGGAAGTAAAATTATTATAACTACTAGGCATTCTGGGTTGTTAAAGGCTAGTCAAGTTGTTAAGGTGCATAGCGTTGGAACTTTAAATGATGCTCAATCACTGGAGCTTTTTAGTTGGCATTGTTTTCGACAGGACCATCCAGTTGCAGGTTACGTCGAACTTTCAAAAGGGGTAGTTAACCACTGTGGAGGACTACCGTTAGCTCTTCAAACTTTGGGTTCTTCTTTATCGGGGAAAACGTTAGATGTATGGGAAAGTGCATTAAAGAAACTGAATGCTATTCCAAACAGTGAAGTCTTGAGCAAGCTTAGAATAAGCTACGACTCTTTACAAGATGACCATGATCAAAATTTGTTCCTCCATCTTGCTTGTTTCTTTATTGGAATGGACAAGGATGTTGTGGTCAAAATATTAGATGAATGTGATTTTTACACAATTGTTGGTATTCAAAATCTTGTTGATAGATGTTTGGTAACAATCAATGTAAATAATGTGGTGAGCATGCATCAAATGATTTGTGACATGGGAAGAGAAATTGTTCGACAAGAATCAAGGGAGCCGGAGAAACGCAGTCGATTATGGGATCCCAAAGATTCCTTGAATGTACTGATGAGAGAAAAGAAAGGTTCAGACACAATTGAAGGTCTTGCCCTGAACATGTACCGGTACCCTGTCGTCTTGGAAACCAATGCATTTGCAGGGATGCACAAACTGAGATTACTCCAACTTGGTTATGTAAAACTGACTGGAAGTTGTGAAGAACTTCCCAAGGGGTTGAAATGGTTGTGCTGGCTTCAGTTTCCTTTGGATTCTATACGCATCAGTTTTCCTTTGGAAAGCCTGGTCGTTCTAGAAATGTCTTGCAGTAGCTTGAGAAAACTCTGGCGGGGAACAAAGCATCTTCCATCTTTGAAGATCCTTGATCTCCGCCATTCCCATGACCTGATAAAAAGCGGTGACTTCTCATTGGTCCCCAATCTAGAGAGACTGATATTTGAAGATTGTTCAAGCTTGGTTGATGTCCATGAATCTGTTGGAAACTTAGAGAAGCTCGTATACTTGAACATGAGGGATTGCAAAAGTATTGGCAAACTTCCAAAGAACATTTGTATGCTGAAAGTACTAGAGACACTTATTATATCCGGTTGCTCAAATCTTTATGAGTTTCCAATGGAGGTTGGGAAGATGAAATATCTGAAAGTTCTTGAAGCAGATGGAATTTCAATAAATCGATTAGTCACAACTTCTGGGGAAGCCGAATCACGGCCAAGAAAAAGTGTTGATAACTTTTGGGCTTGTTTGTCCTCCACTTTAGTTCATTTAAGTCTTCCACATTGCAATCTTTCTGATGATTGTTTTCCTTCTGATGCTGTTAACTTATACTCATTGAAGAGTTTGGATCTCAGCAATAATCCAATTTGTAGCTTACCATATTTCGTCAGAGGCCTTAGAGGGCTCAATTCAATGTTACTTTGGGGGTGCAGAGATCTCAAATCACTTGTAAGGTTACCAAGAGTAAGAACTTTGGATGTCCACTTGTGTGAATCCTTGGAAAGTGTAACGTTTCAATCGGTATCATGCATACCAGAGTCAATAGGCTTGATTGCTTACAAGTCCCAACTAGTTGAGATTGAGTACTGGTTCAAGTTAGAAGCCATTGAAAAAGTGGATTTAGAAATGATCAAGCTTTTGTGTTTGTGCAACTTGGAATCCATGGAACGCATTTGGATGCACACCCCATATAACAACGCTGAAGTGACGATGCTTCCCATCCAGGGACTGTATGAATATGGTATATTTAGCACATTTCTTCCTACAAAGGGAAACGACGTTCCAGGGCAGTTCAGCCATACAAGTAAAGGGTCATCACGTTCAATGTCCTTTACTGTGCCTGCACCTTTACTTCCTAATCAAAGGATCCGAGGCTTGAACATCTTCTGTGTATATGCAAACTACGATGTTGACGTCAGGTGCATTGATCCAATAATAATTAGAGTCAATAATAAGAGCAAAGGTCTGAAGTGGATCTATGGACCAACATGTTACGGCATTCCAAGCCATAATGAAAAAGATGTGGTATGGTTAAGCCATTGGAAGTTGGGAAATCGATTGGAAGCTGGCGATGAAGTTACTGTTACAGTATTTCCATTTGAACCATTCCAGATAAAAGAGTGGGGCTTCCAGGTTGTGCATGAGCAAGAAGGCAAAATAAGTAACCAACACAACACCACATATCCAGATGATAATGACGTTATTGGTAAATATTGTACAGATTTTTCCGAATTATACCAGGTGATGCCGGGAACATACTTCCTCTGCGGTGGACCTGTGATATATGATAGACAGTCACATGTATTACAAAAAGGGTCAGTTTTGTTCAATCACATTATTGGAGATTCTGATGAAAGTGCAGCAACAAAAGAAGCAATGAGAGACCGAAAAAAGTTCTGCAGTCGAAGTGGGCTTGTTACCATTACTGGTGCTATGTCTTTGATTTGCAGTCCAGGCCGCATTTCAAAAGAAGGAAGGAAATCCAAGCCAAAAATTAAATACACTAGTTTAACCCAGCCAAAAGCTCAACCTTTACTAGTTCGCATTCTCTTTTGCCTTTTCCTTCTTTTGGTTCAACATATTGCAGTTTCTTTTTTGATAAAGAATTTTTTTATCTCCTATCAAGATCATTTATCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

1226

Amino Acids

138.41

Weight (kDa)

7.79

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	22 - 187	5e-49	TIR domain
TIR_2	PF13676	24 - 146	1.7e-15	TIR domain
NB-ARC	PF00931	202 - 373	2.5e-19	NB-ARC domain
WHD_ROQ1	PF23282	442 - 513	1.3e-17	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	659 - 734	6.3e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	527, 720, 1004
AasI	GACNNNNNNGTC	1 cut(s)	290
AatII	GACGTC	1 cut(s)	2955
Acc16I	TGCGCA	1 cut(s)	708
Acc36I	ACCTGC	1 cut(s)	1124
Acc65I	GGTACC	1 cut(s)	1653
AccB1I	GGYRCC	2 cut(s)	276, 1653
AccI	GTMKAC	1 cut(s)	2043
AciI	CCGC	7 cut(s)	30, 452, 1873, 1915, 1941, 3306, 3496
AclI	AACGTT	2 cut(s)	1226, 2549
AcoI	YGGCCR	2 cut(s)	197, 2252
AcsI	RAATTY	4 cut(s)	669, 1336, 2205, 3643
AcuI	CTGAAG	4 cut(s)	252, 1766, 2760, 3026
AcyI	GRCGYC	1 cut(s)	2952
AfaI	GTAC	8 cut(s)	855, 912, 1593, 1649, 1655, 2109, 2624, 3256
AfiI	CCNNNNNNNGG	9 cut(s)	127, 166, 369, 592, 1133, 2250, 2762, 2807, 3607
AflII	CTTAAG	1 cut(s)	574
AflIII	ACRYGT	3 cut(s)	1644, 3026, 3337
AgeI	ACCGGT	1 cut(s)	1650
AhlI	ACTAGT	3 cut(s)	2608, 3542, 3574
AjnI	CCWGG	9 cut(s)	279, 591, 985, 1827, 2760, 2821, 3168, 3276, 3490
AleI	CACNNNNGTG	1 cut(s)	2526
AloI	GAACNNNNNNTCC	2 cut(s)	2802, 2834
Alw26I	GTCTC	4 cut(s)	231, 1966, 2108, 3414
AlwNI	CAGNNNCTG	1 cut(s)	2767
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	5 cut(s)	129, 197, 2252, 2431, 3493
ApeKI	GCWGC	1 cut(s)	3398
ApoI	RAATTY	4 cut(s)	669, 1336, 2205, 3643
AsiGI	ACCGGT	1 cut(s)	1650
Asp700I	GAANNNNTTC	3 cut(s)	1524, 1749, 2921
Asp718I	GGTACC	1 cut(s)	1653
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	4 cut(s)	1120, 1957, 3020, 3311
AsuC2I	CCSGG	1 cut(s)	3288
AsuHPI	GGTGA	5 cut(s)	101, 110, 1495, 1955, 3292
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	4 cut(s)	1120, 1957, 3020, 3311
BamHI	GGATCC	2 cut(s)	1570, 2904
BanI	GGYRCC	2 cut(s)	276, 1653
BanII	GRGCYC	1 cut(s)	2445
BarI	GAAGNNNNNNTAC	2 cut(s)	2027, 2059
BbsI	GAAGAC	1 cut(s)	2306
BbvI	GCAGC	1 cut(s)	3410
BccI	CCATC	8 cut(s)	267, 367, 635, 1131, 1356, 1900, 2195, 2765
BceAI	ACGGC	2 cut(s)	2267, 3049
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciT130I	CCWGG	9 cut(s)	281, 593, 987, 1829, 2762, 2823, 3170, 3278, 3492
BciVI	GTATCC	1 cut(s)	203
BclI	TGATCA	4 cut(s)	19, 934, 1330, 2667
BcnI	CCSGG	1 cut(s)	3288
BcoDI	GTCTC	4 cut(s)	231, 1966, 2108, 3414
BcuI	ACTAGT	3 cut(s)	2608, 3542, 3574
BfmI	CTRYAG	3 cut(s)	206, 806, 3436
BfrI	CTTAAG	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	1124
BfuI	GTATCC	1 cut(s)	203
BglII	AGATCT	2 cut(s)	472, 2473
BisI	GCNGC	4 cut(s)	30, 453, 3399, 3496
BlsI	GCNGC	4 cut(s)	31, 454, 3400, 3497
BmcAI	AGTACT	3 cut(s)	912, 2109, 2624
Bme18I	GGWCC	4 cut(s)	1120, 1957, 3020, 3311
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	4 cut(s)	1120, 1957, 3020, 3311
BmiI	GGNNCC	6 cut(s)	278, 1545, 1572, 1655, 1959, 2906
BpiI	GAAGAC	1 cut(s)	2306
BpmI	CTGGAG	3 cut(s)	449, 466, 1109
BpuEI	CTTGAG	3 cut(s)	97, 1306, 1879
BpuMI	CCSGG	1 cut(s)	3288
Bsa29I	ATCGAT	2 cut(s)	2218, 3094
BsaBI	GATNNNNATC	2 cut(s)	354, 933
BsaHI	GRCGYC	1 cut(s)	2952
BsaI	GGTCTC	1 cut(s)	3414
BsaJI	CCNNGG	7 cut(s)	132, 1755, 2535, 2700, 2761, 2822, 2908
BsaWI	WCCGGW	2 cut(s)	1650, 2129
Bsc4I	CCNNNNNNNGG	9 cut(s)	127, 166, 369, 592, 1133, 2250, 2762, 2807, 3607
Bse118I	RCCGGY	1 cut(s)	1650
Bse1I	ACTGG	5 cut(s)	1092, 1127, 1738, 2630, 3469
Bse3DI	GCAATG	3 cut(s)	702, 2320, 3420
Bse8I	GATNNNNATC	2 cut(s)	354, 933
BseBI	CCWGG	9 cut(s)	281, 593, 987, 1829, 2762, 2823, 3170, 3278, 3492
BseCI	ATCGAT	2 cut(s)	2218, 3094
BseDI	CCNNGG	7 cut(s)	132, 1755, 2535, 2700, 2761, 2822, 2908
BseJI	GATNNNNATC	2 cut(s)	354, 933
BseLI	CCNNNNNNNGG	9 cut(s)	127, 166, 369, 592, 1133, 2250, 2762, 2807, 3607
BseMI	GCAATG	3 cut(s)	702, 2320, 3420
BseMII	CTCAG	2 cut(s)	1691, 2404
BseNI	ACTGG	5 cut(s)	1092, 1127, 1738, 2630, 3469
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	3410
BseYI	CCCAGC	1 cut(s)	3552
BsgI	GTGCAG	3 cut(s)	2488, 2865, 3417
BshFI	GGCC	5 cut(s)	131, 199, 2254, 2433, 3495
BshNI	GGYRCC	2 cut(s)	276, 1653
BshTI	ACCGGT	1 cut(s)	1650
BshVI	ATCGAT	2 cut(s)	2218, 3094
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	196, 1547, 1651, 2130, 3287
BslFI	GGGAC	3 cut(s)	1943, 2587, 2778
BslI	CCNNNNNNNGG	9 cut(s)	127, 166, 369, 592, 1133, 2250, 2762, 2807, 3607
BsmAI	GTCTC	4 cut(s)	231, 1966, 2108, 3414
BsmFI	GGGAC	3 cut(s)	1943, 2587, 2778
BsmI	GAATGC	5 cut(s)	606, 1015, 1267, 3036, 3582
BsnI	GGCC	5 cut(s)	131, 199, 2254, 2433, 3495
Bso31I	GGTCTC	1 cut(s)	3414
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	2445
Bsp1407I	TGTACA	1 cut(s)	3254
Bsp19I	CCATGG	1 cut(s)	2700
BspACI	CCGC	7 cut(s)	30, 452, 1873, 1915, 1941, 3306, 3496
BspANI	GGCC	5 cut(s)	131, 199, 2254, 2433, 3495
BspCNI	CTCAG	2 cut(s)	1692, 2403
BspDI	ATCGAT	2 cut(s)	2218, 3094
BspHI	TCATGA	2 cut(s)	22, 294
BspLI	GGNNCC	6 cut(s)	278, 1545, 1572, 1655, 1959, 2906
BspMAI	CTGCAG	1 cut(s)	3440
BspMI	ACCTGC	1 cut(s)	1124
BspQI	GCTCTTC	1 cut(s)	1197
BspT107I	GGYRCC	2 cut(s)	276, 1653
BspTI	CTTAAG	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	3414
BsrDI	GCAATG	3 cut(s)	702, 2320, 3420
BsrFI	RCCGGY	1 cut(s)	1650
BsrGI	TGTACA	1 cut(s)	3254
BsrI	ACTGG	5 cut(s)	1092, 1127, 1738, 2630, 3469
BssAI	RCCGGY	1 cut(s)	1650
BssECI	CCNNGG	7 cut(s)	132, 1755, 2535, 2700, 2761, 2822, 2908
BssNAI	GTATAC	1 cut(s)	2044
BssNI	GRCGYC	1 cut(s)	2952
BssT1I	CCWWGG	4 cut(s)	132, 1755, 2535, 2700
Bst1107I	GTATAC	1 cut(s)	2044
Bst2UI	CCWGG	9 cut(s)	281, 593, 987, 1829, 2762, 2823, 3170, 3278, 3492
Bst4CI	ACNGT	9 cut(s)	225, 1172, 1185, 1277, 2769, 2875, 3121, 3127, 3333
Bst6I	CTCTTC	4 cut(s)	40, 1197, 1510, 2372
BstACI	GRCGYC	1 cut(s)	2952
BstAFI	CTTAAG	1 cut(s)	574
BstAUI	TGTACA	1 cut(s)	3254
BstC8I	GCNNGC	6 cut(s)	481, 1292, 1490, 1778, 2880, 3106
BstDEI	CTNAG	6 cut(s)	796, 1295, 1700, 2029, 2390, 2435
BstDSI	CCRYGG	1 cut(s)	2700
BstEII	GGTNACC	1 cut(s)	2493
BstHHI	GCGC	1 cut(s)	709
BstMAI	GTCTC	4 cut(s)	231, 1966, 2108, 3414
BstMWI	GCNNNNNNNGC	2 cut(s)	3042, 3492
BstNI	CCWGG	9 cut(s)	281, 593, 987, 1829, 2762, 2823, 3170, 3278, 3492
BstNSI	RCATGY	4 cut(s)	1492, 1648, 3030, 3341
BstPI	GGTNACC	1 cut(s)	2493
BstSFI	CTRYAG	3 cut(s)	206, 806, 3436
BstV1I	GCAGC	1 cut(s)	3410
BstV2I	GAAGAC	1 cut(s)	2306
BstX2I	RGATCY	7 cut(s)	472, 1570, 1902, 2386, 2473, 2904, 3012
BstYI	RGATCY	7 cut(s)	472, 1570, 1902, 2386, 2473, 2904, 3012
BstZ17I	GTATAC	1 cut(s)	2044
Bsu15I	ATCGAT	2 cut(s)	2218, 3094
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	5 cut(s)	131, 199, 2254, 2433, 3495
BsuTUI	ATCGAT	2 cut(s)	2218, 3094
BtgI	CCRYGG	1 cut(s)	2700
BtgZI	GCGATG	1 cut(s)	3123
BtsIMutI	CAGTG	4 cut(s)	871, 1085, 1168, 1282
BveI	ACCTGC	1 cut(s)	1124
Cac8I	GCNNGC	6 cut(s)	481, 1292, 1490, 1778, 2880, 3106
CaiI	CAGNNNCTG	1 cut(s)	2767
CciI	TCATGA	2 cut(s)	22, 294
CfoI	GCGC	1 cut(s)	709
Cfr10I	RCCGGY	1 cut(s)	1650
Cfr13I	GGNCC	4 cut(s)	1120, 1957, 3020, 3311
ClaI	ATCGAT	2 cut(s)	2218, 3094
CsiI	ACCWGGT	2 cut(s)	591, 3276
Csp6I	GTAC	8 cut(s)	854, 911, 1592, 1648, 1654, 2108, 2623, 3255
CspAI	ACCGGT	1 cut(s)	1650
CviQI	GTAC	8 cut(s)	854, 911, 1592, 1648, 1654, 2108, 2623, 3255
DdeI	CTNAG	6 cut(s)	796, 1295, 1700, 2029, 2390, 2435
DraI	TTTAAA	1 cut(s)	1071
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	2 cut(s)	197, 2252
Eam1104I	CTCTTC	4 cut(s)	40, 1197, 1510, 2372
EarI	CTCTTC	4 cut(s)	40, 1197, 1510, 2372
EciI	GGCGGA	1 cut(s)	1904
Eco130I	CCWWGG	4 cut(s)	132, 1755, 2535, 2700
Eco147I	AGGCCT	1 cut(s)	2433
Eco24I	GRGCYC	1 cut(s)	2445
Eco31I	GGTCTC	1 cut(s)	3414
Eco47I	GGWCC	4 cut(s)	1120, 1957, 3020, 3311
Eco57I	CTGAAG	4 cut(s)	252, 1766, 2760, 3026
Eco88I	CYCGRG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	2493
EcoO65I	GGTNACC	1 cut(s)	2493
EcoRII	CCWGG	9 cut(s)	279, 591, 985, 1827, 2760, 2821, 3168, 3276, 3490
EcoT14I	CCWWGG	4 cut(s)	132, 1755, 2535, 2700
EcoT22I	ATGCAT	3 cut(s)	1494, 1681, 2570
EcoT38I	GRGCYC	1 cut(s)	2445
ErhI	CCWWGG	4 cut(s)	132, 1755, 2535, 2700
FalI	AAGNNNNNCTT	2 cut(s)	900, 932
FaqI	GGGAC	3 cut(s)	1943, 2587, 2778
FauI	CCCGC	1 cut(s)	1866
FbaI	TGATCA	4 cut(s)	19, 934, 1330, 2667
FblI	GTMKAC	1 cut(s)	2043
Fnu4HI	GCNGC	4 cut(s)	30, 453, 3399, 3496
FriOI	GRGCYC	1 cut(s)	2445
Fsp4HI	GCNGC	4 cut(s)	30, 453, 3399, 3496
FspI	TGCGCA	1 cut(s)	708
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	4 cut(s)	30, 453, 3399, 3496
GsaI	CCCAGC	1 cut(s)	3556
GsuI	CTGGAG	3 cut(s)	449, 466, 1109
HaeIII	GGCC	5 cut(s)	131, 199, 2254, 2433, 3495
HapII	CCGG	5 cut(s)	196, 1547, 1651, 2130, 3287
HhaI	GCGC	1 cut(s)	709
Hin1I	GRCGYC	1 cut(s)	2952
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	4 cut(s)	139, 1165, 2362, 2950
HindII	GTYRAC	4 cut(s)	139, 1165, 2362, 2950
HindIII	AAGCTT	3 cut(s)	1292, 1996, 2672
HpaI	GTTAAC	2 cut(s)	1165, 2362
HpaII	CCGG	5 cut(s)	196, 1547, 1651, 2130, 3287
HphI	GGTGA	5 cut(s)	101, 110, 1495, 1955, 3292
Hpy166II	GTNNAC	7 cut(s)	139, 1165, 2044, 2362, 2521, 2950, 3311
Hpy8I	GTNNAC	7 cut(s)	139, 1165, 2044, 2362, 2521, 2950, 3311
Hpy99I	CGWCG	2 cut(s)	1145, 2819
HpyCH4III	ACNGT	9 cut(s)	225, 1172, 1185, 1277, 2769, 2875, 3121, 3127, 3333
HpyCH4IV	ACGT	8 cut(s)	69, 1140, 1226, 2549, 2817, 2857, 2952, 3237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	3042, 3492
HpyF3I	CTNAG	6 cut(s)	796, 1295, 1700, 2029, 2390, 2435
HpySE526I	ACGT	8 cut(s)	69, 1140, 1226, 2549, 2817, 2857, 2952, 3237
Hsp92I	GRCGYC	1 cut(s)	2952
HspAI	GCGC	1 cut(s)	707
KpnI	GGTACC	1 cut(s)	1657
Ksp22I	TGATCA	4 cut(s)	19, 934, 1330, 2667
KspAI	GTTAAC	2 cut(s)	1165, 2362
LguI	GCTCTTC	1 cut(s)	1197
LmnI	GCTCC	2 cut(s)	1090, 1543
Lsp1109I	GCAGC	1 cut(s)	3410
MabI	ACCWGGT	2 cut(s)	591, 3276
MaeII	ACGT	8 cut(s)	69, 1140, 1226, 2549, 2817, 2857, 2952, 3237
MfeI	CAATTG	2 cut(s)	1422, 1623
MflI	RGATCY	7 cut(s)	472, 1570, 1902, 2386, 2473, 2904, 3012
MhlI	GDGCHC	1 cut(s)	2445
MlyI	GAGTC	4 cut(s)	524, 1304, 2585, 2991
MmeI	TCCRAC	6 cut(s)	63, 244, 577, 1042, 1735, 2002
Mph1103I	ATGCAT	3 cut(s)	1494, 1681, 2570
MroXI	GAANNNNTTC	3 cut(s)	1524, 1749, 2921
MslI	CAYNNNNRTG	4 cut(s)	1923, 2096, 2526, 2714
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	5 cut(s)	196, 1547, 1651, 2130, 3287
MunI	CAATTG	2 cut(s)	1422, 1623
Mva1269I	GAATGC	5 cut(s)	606, 1015, 1267, 3036, 3582
MvaI	CCWGG	9 cut(s)	281, 593, 987, 1829, 2762, 2823, 3170, 3278, 3492
MwoI	GCNNNNNNNGC	2 cut(s)	3042, 3492
NciI	CCSGG	1 cut(s)	3288
NcoI	CCATGG	1 cut(s)	2700
NlaIV	GGNNCC	6 cut(s)	278, 1545, 1572, 1655, 1959, 2906
NmuCI	GTSAC	5 cut(s)	1505, 1943, 2224, 2743, 3333
NsbI	TGCGCA	1 cut(s)	708
NsiI	ATGCAT	3 cut(s)	1494, 1681, 2570
NspI	RCATGY	4 cut(s)	1492, 1648, 3030, 3341
OliI	CACNNNNGTG	1 cut(s)	2526
PaeI	GCATGC	1 cut(s)	1492
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	2 cut(s)	22, 294
PceI	AGGCCT	1 cut(s)	2433
PciI	ACATGT	3 cut(s)	1644, 3026, 3337
PciSI	GCTCTTC	1 cut(s)	1197
PcsI	WCGNNNNNNNCGW	3 cut(s)	157, 1223, 2949
PctI	GAATGC	5 cut(s)	606, 1015, 1267, 3036, 3582
PdmI	GAANNNNTTC	3 cut(s)	1524, 1749, 2921
PfeI	GAWTC	9 cut(s)	315, 1535, 1580, 1796, 2015, 2246, 2531, 2696, 3383
PfoI	TCCNGGA	1 cut(s)	985
PinAI	ACCGGT	1 cut(s)	1650
PkrI	GCNGC	4 cut(s)	31, 454, 3400, 3497
PleI	GAGTC	4 cut(s)	523, 1304, 2584, 2990
PpsI	GAGTC	4 cut(s)	523, 1304, 2584, 2990
PscI	ACATGT	3 cut(s)	1644, 3026, 3337
PsiI	TTATAA	3 cut(s)	527, 720, 1004
Psp1406I	AACGTT	2 cut(s)	1226, 2549
Psp6I	CCWGG	9 cut(s)	279, 591, 985, 1827, 2760, 2821, 3168, 3276, 3490
PspEI	GGTNACC	1 cut(s)	2493
PspFI	CCCAGC	1 cut(s)	3552
PspGI	CCWGG	9 cut(s)	279, 591, 985, 1827, 2760, 2821, 3168, 3276, 3490
PspN4I	GGNNCC	6 cut(s)	278, 1545, 1572, 1655, 1959, 2906
PspPI	GGNCC	4 cut(s)	1120, 1957, 3020, 3311
PstI	CTGCAG	1 cut(s)	3440
PstNI	CAGNNNCTG	1 cut(s)	2767
PsuI	RGATCY	7 cut(s)	472, 1570, 1902, 2386, 2473, 2904, 3012
RsaI	GTAC	8 cut(s)	855, 912, 1593, 1649, 1655, 2109, 2624, 3256
RsaNI	GTAC	8 cut(s)	854, 911, 1592, 1648, 1654, 2108, 2623, 3255
RseI	CAYNNNNRTG	4 cut(s)	1923, 2096, 2526, 2714
SapI	GCTCTTC	1 cut(s)	1197
SatI	GCNGC	4 cut(s)	30, 453, 3399, 3496
Sau96I	GGNCC	4 cut(s)	1120, 1957, 3020, 3311
ScaI	AGTACT	3 cut(s)	912, 2109, 2624
SchI	GAGTC	4 cut(s)	524, 1304, 2585, 2991
SduI	GDGCHC	1 cut(s)	2445
SexAI	ACCWGGT	2 cut(s)	591, 3276
SfcI	CTRYAG	3 cut(s)	206, 806, 3436
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	4 cut(s)	1120, 1957, 3020, 3311
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	4 cut(s)	1923, 2096, 2526, 2714
SmlI	CTYRAG	5 cut(s)	76, 176, 574, 1285, 1858
SmoI	CTYRAG	5 cut(s)	76, 176, 574, 1285, 1858
SpeI	ACTAGT	3 cut(s)	2608, 3542, 3574
SphI	GCATGC	1 cut(s)	1492
SseBI	AGGCCT	1 cut(s)	2433
SsiI	CCGC	7 cut(s)	30, 452, 1873, 1915, 1941, 3306, 3496
SspI	AATATT	3 cut(s)	342, 1398, 3251
StuI	AGGCCT	1 cut(s)	2433
StyI	CCWWGG	4 cut(s)	132, 1755, 2535, 2700
TaaI	ACNGT	9 cut(s)	225, 1172, 1185, 1277, 2769, 2875, 3121, 3127, 3333
TaiI	ACGT	8 cut(s)	72, 1143, 1229, 2552, 2820, 2860, 2955, 3240
TaqII	GACCGA	1 cut(s)	3438
TatI	WGTACW	6 cut(s)	853, 910, 1591, 2107, 2622, 3254
TauI	GCSGC	3 cut(s)	32, 455, 3498
TfiI	GAWTC	9 cut(s)	315, 1535, 1580, 1796, 2015, 2246, 2531, 2696, 3383
TscAI	CASTG	4 cut(s)	871, 1092, 1175, 1282
TseFI	GTSAC	5 cut(s)	1505, 1943, 2224, 2743, 3333
TseI	GCWGC	1 cut(s)	3398
Tsp45I	GTSAC	5 cut(s)	1505, 1943, 2224, 2743, 3333
TspRI	CASTG	4 cut(s)	871, 1092, 1175, 1282
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	4 cut(s)	1120, 1957, 3020, 3311
XapI	RAATTY	4 cut(s)	669, 1336, 2205, 3643
XbaI	TCTAGA	2 cut(s)	1837, 1966
XceI	RCATGY	4 cut(s)	1492, 1648, 3030, 3341
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2018, 2650
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	2043
XmnI	GAANNNNTTC	3 cut(s)	1524, 1749, 2921
ZraI	GACGTC	1 cut(s)	2953
ZrmI	AGTACT	3 cut(s)	912, 2109, 2624
Zsp2I	ATGCAT	3 cut(s)	1494, 1681, 2570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.