Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Reverse (-)

21132748 .. 21135001

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G158100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCCAAACCCTCCATTGATATCTCGGAGAGCTTCGCTTCCACAGCTAAAATTTCAGGGGACATTTCTCAGAAAGACGTAAACAATGTGCTGCAATTTCTCATAGGCGTGGGGGTCTCAGGCCATGTCCCAGATCAATTCGATGCTAAAAAAGATTCCTACTCTGACCTCGTTCGTGACCTCCTCGAGCCCCTACACATCTCACGCGGCCATGTCACCTGCCTCGTCTCTGTGAAACCTGCTGTTATTAATTTCTTTGCAGGATTTCATGGAGGAGCTGTTGCTGCTGTTGCTGAGGCTGTGTCCATAGCTTGTGCTAGAACAGTCATGGCTAAGGATAAGGAAATTTTTCTAGGGGAACTAAGCATCTCTTACCTCGCCAGCGCAAAAAAGAATGCAGAGGTGATAGTTGATGCATCTGTTGTGCGAAGTGGAAGAAATCTGAGTGTGATAGCGCTAGAGTTCAAGCTCAAGAAAACTGGGGACTTGATTTACACAGCTCGTGCCACCTTCTATCACATGCCTGCTGCCAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

180

Amino Acids

19.11

Weight (kDa)

8.51

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	2 cut(s)	227, 247
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	207
AcoI	YGGCCR	2 cut(s)	3, 208
AcsI	RAATTY	2 cut(s)	51, 345
AfeI	AGCGCT	1 cut(s)	456
AgsI	TTSAA	1 cut(s)	466
AluBI	AGCT	6 cut(s)	33, 47, 278, 311, 469, 500
AluI	AGCT	6 cut(s)	33, 47, 278, 311, 469, 500
Alw26I	GTCTC	2 cut(s)	121, 232
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	456
AoxI	GGCC	3 cut(s)	3, 121, 208
ApeKI	GCWGC	3 cut(s)	91, 284, 527
ApoI	RAATTY	2 cut(s)	51, 345
AseI	ATTAAT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	386, 457
AsuHPI	GGTGA	2 cut(s)	208, 415
AvaI	CYCGRG	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	501
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	78, 271, 514
BcoDI	GTCTC	2 cut(s)	121, 232
BfaI	CTAG	3 cut(s)	318, 353, 458
BfoI	RGCGCY	1 cut(s)	458
BfuAI	ACCTGC	2 cut(s)	227, 247
BisI	GCNGC	4 cut(s)	92, 208, 285, 528
BlsI	GCNGC	4 cut(s)	93, 209, 286, 529
BmeT110I	CYCGRG	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	4 cut(s)	133, 375, 403, 425
BmuI	ACTGGG	1 cut(s)	489
Bpu10I	CCTNAGC	2 cut(s)	294, 333
BpuEI	CTTGAG	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse1I	ACTGG	1 cut(s)	484
BseMII	CTCAG	4 cut(s)	83, 132, 285, 434
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	2 cut(s)	173, 288
BseXI	GCAGC	3 cut(s)	78, 271, 514
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	5, 123, 210
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	3 cut(s)	74, 113, 497
BsmAI	GTCTC	2 cut(s)	121, 232
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	3 cut(s)	74, 113, 497
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	5, 123, 210
Bso31I	GGTCTC	1 cut(s)	121
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	3 cut(s)	5, 123, 210
BspCNI	CTCAG	4 cut(s)	82, 131, 286, 435
BspFNI	CGCG	1 cut(s)	207
BspMI	ACCTGC	2 cut(s)	227, 247
BspTNI	GGTCTC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	1 cut(s)	133
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	382, 525
BstDEI	CTNAG	6 cut(s)	69, 118, 294, 333, 362, 443
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	2 cut(s)	386, 457
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	2 cut(s)	121, 232
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 284, 290
BstNSI	RCATGY	1 cut(s)	523
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	78, 271, 514
BsuRI	GGCC	3 cut(s)	5, 123, 210
BveI	ACCTGC	2 cut(s)	227, 247
Cac8I	GCNNGC	2 cut(s)	382, 525
CfoI	GCGC	2 cut(s)	386, 457
CviAII	CATG	5 cut(s)	125, 212, 269, 328, 520
DdeI	CTNAG	6 cut(s)	69, 118, 294, 333, 362, 443
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EaeI	YGGCCR	2 cut(s)	3, 208
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	22
Eco47III	AGCGCT	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	5 cut(s)	128, 215, 272, 331, 523
FaiI	YATR	8 cut(s)	104, 126, 213, 270, 308, 329, 521, 538
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	3 cut(s)	74, 113, 497
FatI	CATG	5 cut(s)	124, 211, 268, 327, 519
Fnu4HI	GCNGC	4 cut(s)	92, 208, 285, 528
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	92, 208, 285, 528
FspBI	CTAG	3 cut(s)	318, 353, 458
GlaI	GCGC	2 cut(s)	385, 456
GluI	GCNGC	4 cut(s)	92, 208, 285, 528
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	5, 123, 210
HhaI	GCGC	2 cut(s)	386, 457
Hin1II	CATG	5 cut(s)	128, 215, 272, 331, 523
Hin6I	GCGC	2 cut(s)	384, 455
HinP1I	GCGC	2 cut(s)	384, 455
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	2 cut(s)	208, 415
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	4 cut(s)	28, 72, 166, 444
Hpy188III	TCNNGA	2 cut(s)	176, 472
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	94, 260, 398, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 284, 290
HpyF3I	CTNAG	6 cut(s)	69, 118, 294, 333, 362, 443
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	128, 215, 272, 331, 523
HspAI	GCGC	2 cut(s)	384, 455
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	42, 105, 144, 232, 246, 252, 394, 465
Lsp1109I	GCAGC	3 cut(s)	78, 271, 514
LweI	GCATC	4 cut(s)	133, 375, 403, 425
MaeI	CTAG	3 cut(s)	318, 353, 458
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	176, 214
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	51, 95, 137, 250, 345, 533
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	9 cut(s)	22, 179, 191, 194, 233, 266, 289, 386, 394
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	400
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	44, 284, 290
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	5 cut(s)	128, 215, 272, 331, 523
NmuCI	GTSAC	2 cut(s)	176, 214
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	227
PctI	GAATGC	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	93, 209, 286, 529
PshBI	ATTAAT	1 cut(s)	249
PspXI	VCTCGAGB	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	4 cut(s)	92, 208, 285, 528
Sau3AI	GATC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	4 cut(s)	133, 375, 403, 425
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	185, 470
SmoI	CTYRAG	2 cut(s)	185, 470
Sse9I	AATT	6 cut(s)	51, 95, 137, 250, 345, 533
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	3 cut(s)	318, 353, 458
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	141, 186
TasI	AATT	6 cut(s)	51, 95, 137, 250, 345, 533
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	176, 214
TseI	GCWGC	3 cut(s)	91, 284, 527
Tsp45I	GTSAC	2 cut(s)	176, 214
TspDTI	ATGAA	1 cut(s)	257
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	2 cut(s)	51, 345
XceI	RCATGY	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	3 cut(s)	318, 353, 458
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.