Rh1DG241700
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002384
Physical Location & Seq
Reverse (-)
45750263 .. 45752122
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG241700.1

Sequence Viewer

Length: 711 bp
ATGGCTATAACTTATAATCAAATATTCCTGTCTGAAAATGACAAATATAAGATGCGAGTATGTCACCCTTTAGTCCTTTACCCATATAATAAGATAAGAAAATATAATAGTTGGTTGGTTTCAGAGAGGTATCTAGTAATTGACACAAGAATAGGCAAGAAGACAAAGATGGCAAAGCCCCCAATTGCTCTCTCAGAGAGCTTTGCTTCCAATTCCAGAGCAACAATTTCCAAAGACATTCCTGAAGAACACTTGAACCAACTGCTGAGGTTTCTTGAAAGAGTGGGGATCTCTGGCAATGTCCCAGATTATTGCAATACCGAAGACTTCTATTCCGACCTCATTGGTGGCATCCTCAAGCCCCTGACAGTCCTACGAGGCCGCATCACTTGCTTGGTCTCTGTAAAACCTGCTGTTACTAATAAATTTGGAGGATTTCATGGAGGAGCTATTGCTGCTGTTGCTGAGGCTGTGTCGTTTGCTACTGCAAGAACGGCCGTGGCTGAGGATAAGGAGCTTTTTCTAGGGGAACTAAGCATCTCTTACCTCTCTTCTGCACCAAAGAATGCAGAGGTGATAATTGATGGATCTGTAGTGCGGAGTGGGAGAAACTTAACTGTGGTAGCACTGGAGTTCAAGCTGAAGAAAACTGGGAACTTGATGTACACTGCTCGTGCTACCTTATATCACATGCCCGTCTCGAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

236

Amino Acids

26.18

Weight (kDa)

9.48

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT_3 PF13622 142 - 227 1e-05 Acyl-CoA thioesterase N-terminal domain
4HBT PF03061 144 - 217 8.7e-09 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 418
AciI CCGC 2 cut(s) 382, 598
AclWI GGATC 2 cut(s) 296, 595
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 2 cut(s) 264, 662
AfaI GTAC 1 cut(s) 665
AgsI TTSAA 3 cut(s) 256, 278, 637
AluBI AGCT 4 cut(s) 201, 449, 517, 640
AluI AGCT 4 cut(s) 201, 449, 517, 640
Alw26I GTCTC 2 cut(s) 403, 703
AlwI GGATC 2 cut(s) 296, 595
AoxI GGCC 2 cut(s) 379, 495
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 56, 586
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 2 cut(s) 167, 330
BbvCI CCTCAGC 3 cut(s) 266, 465, 504
BbvI GCAGC 1 cut(s) 442
BccI CCATC 2 cut(s) 163, 578
BceAI ACGGC 2 cut(s) 482, 510
BcoDI GTCTC 2 cut(s) 403, 703
BfaI CTAG 2 cut(s) 134, 524
BfmI CTRYAG 1 cut(s) 591
BfuAI ACCTGC 1 cut(s) 418
BisI GCNGC 2 cut(s) 382, 456
BlsI GCNGC 2 cut(s) 383, 457
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 4 cut(s) 42, 360, 393, 546
BmuI ACTGGG 1 cut(s) 660
BpiI GAAGAC 2 cut(s) 167, 330
BpmI CTGGAG 1 cut(s) 650
Bpu10I CCTNAGC 3 cut(s) 266, 465, 504
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 498
Bse1I ACTGG 2 cut(s) 633, 655
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 4 cut(s) 207, 257, 456, 495
BseNI ACTGG 2 cut(s) 633, 655
BseRI GAGGAG 1 cut(s) 459
BseX3I CGGCCG 1 cut(s) 495
BseXI GCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 2 cut(s) 381, 497
BsiEI CGRYCG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 287
BsmAI GTCTC 2 cut(s) 403, 703
BsmBI CGTCTC 1 cut(s) 703
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 381, 497
Bso31I GGTCTC 1 cut(s) 403
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 2 cut(s) 288, 587
BspACI CCGC 2 cut(s) 382, 598
BspANI GGCC 2 cut(s) 381, 497
BspCNI CTCAG 4 cut(s) 206, 258, 457, 496
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 2 cut(s) 296, 595
BspTNI GGTCTC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 2 cut(s) 633, 655
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 2 cut(s) 288, 587
BssSI CACGAG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 672
Bst4CI ACNGT 2 cut(s) 370, 619
Bst6I CTCTTC 1 cut(s) 556
BstAPI GCANNNNNTGC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 663
BstDEI CTNAG 5 cut(s) 193, 266, 465, 504, 533
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 2 cut(s) 291, 590
BstMAI GTCTC 2 cut(s) 403, 703
BstMBI GATC 2 cut(s) 288, 587
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 4 cut(s) 390, 455, 461, 494
BstNSI RCATGY 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 2 cut(s) 167, 330
BstX2I RGATCY 2 cut(s) 288, 587
BstYI RGATCY 2 cut(s) 288, 587
BstZI CGGCCG 1 cut(s) 495
BsuRI GGCC 2 cut(s) 381, 497
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 1 cut(s) 351
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 626, 666
BveI ACCTGC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 664
CviAII CATG 2 cut(s) 440, 691
CviQI GTAC 1 cut(s) 664
DdeI CTNAG 5 cut(s) 193, 266, 465, 504, 533
DpnI GATC 2 cut(s) 290, 589
DpnII GATC 2 cut(s) 288, 587
EaeI YGGCCR 1 cut(s) 495
EagI CGGCCG 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
EclXI CGGCCG 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 403
Eco52I CGGCCG 1 cut(s) 495
Eco57I CTGAAG 2 cut(s) 264, 662
Esp3I CGTCTC 1 cut(s) 703
FaeI CATG 2 cut(s) 443, 694
FalI AAGNNNNNCTT 2 cut(s) 526, 558
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 439, 690
Fnu4HI GCNGC 2 cut(s) 382, 456
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 2 cut(s) 382, 456
FspBI CTAG 2 cut(s) 134, 524
GluI GCNGC 2 cut(s) 382, 456
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 2 cut(s) 381, 497
Hin1II CATG 2 cut(s) 443, 694
HphI GGTGA 2 cut(s) 56, 586
Hpy166II GTNNAC 1 cut(s) 666
Hpy188I TCNGA 4 cut(s) 34, 124, 196, 337
Hpy188III TCNNGA 4 cut(s) 216, 242, 275, 700
Hpy8I GTNNAC 1 cut(s) 666
HpyCH4III ACNGT 2 cut(s) 370, 619
HpyCH4V TGCA 4 cut(s) 315, 488, 557, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 390, 455, 461, 494
HpyF3I CTNAG 5 cut(s) 193, 266, 465, 504, 533
Hsp92II CATG 2 cut(s) 443, 694
Kzo9I GATC 2 cut(s) 288, 587
LmnI GCTCC 2 cut(s) 446, 514
LpnPI CCDG 9 cut(s) 41, 229, 255, 279, 318, 377, 423, 614, 636
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 4 cut(s) 42, 360, 393, 546
MaeI CTAG 2 cut(s) 134, 524
MaeIII GTNAC 2 cut(s) 62, 415
MalI GATC 2 cut(s) 290, 589
MboI GATC 2 cut(s) 288, 587
MboII GAAGA 5 cut(s) 172, 257, 335, 543, 655
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 2 cut(s) 288, 587
MluCI AATT 7 cut(s) 138, 183, 211, 225, 425, 579, 704
MmeI TCCRAC 1 cut(s) 360
MseI TTAA 1 cut(s) 614
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 571
MwoI GCNNNNNNNGC 4 cut(s) 390, 455, 461, 494
NdeII GATC 2 cut(s) 288, 587
NlaIII CATG 2 cut(s) 443, 694
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 694
PctI GAATGC 1 cut(s) 571
PkrI GCNGC 2 cut(s) 383, 457
PsiI TTATAA 1 cut(s) 15
PsrI GAACNNNNNNTAC 2 cut(s) 647, 679
PsuI RGATCY 2 cut(s) 288, 587
RsaI GTAC 1 cut(s) 665
RsaNI GTAC 1 cut(s) 664
SaqAI TTAA 1 cut(s) 614
SatI GCNGC 2 cut(s) 382, 456
Sau3AI GATC 2 cut(s) 288, 587
SfaNI GCATC 4 cut(s) 42, 360, 393, 546
SfcI CTRYAG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 7 cut(s) 138, 183, 211, 225, 425, 579, 704
SsiI CCGC 2 cut(s) 382, 598
SspI AATATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 134, 524
TaaI ACNGT 2 cut(s) 370, 619
TaqI TCGA 1 cut(s) 701
TasI AATT 7 cut(s) 138, 183, 211, 225, 425, 579, 704
TatI WGTACW 1 cut(s) 663
TauI GCSGC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 614
Tru9I TTAA 1 cut(s) 614
TscAI CASTG 2 cut(s) 633, 673
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 2 cut(s) 633, 673
XapI RAATTY 1 cut(s) 425
XceI RCATGY 1 cut(s) 694
XspI CTAG 2 cut(s) 134, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.