Rh1AG245000
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002384
Physical Location & Seq
Reverse (-)
45856341 .. 45856673
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG245000.1

Sequence Viewer

Length: 333 bp
ATGATCTTCGCAACTGAAGTTTTATTGGTAAGTGACATTGATTATGTCATCATTATGCAGAGAAACTTGTTATTTCTACTGCTGAATGAGCTCGATCTGATGCTGCATAAGTGCATAGTTTACATTGTTTACGATTTTCATTTATTACAGTTTTCCTTAATGGCATTTCAAAACCGGACTTACTTGCAGGCAGAGGTGATAATTGATGGATCTGTAGTGCGGAGTGGGAGAAACTTAACTGTGGTAGCACAGGAGTTCAAGCTGAAGAAAACTGGCAACTTGATGTACACTGCTCGTGCTACCTTATATCACATGCCCGTCTCGAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

110

Amino Acids

12.79

Weight (kDa)

7.88

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 36, 284
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 2 cut(s) 170, 259
AluBI AGCT 2 cut(s) 91, 262
AluI AGCT 2 cut(s) 91, 262
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 208
BanII GRGCYC 1 cut(s) 93
BauI CACGAG 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmsI GCATC 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 325
BsmBI CGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 93
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 3, 94, 209
BspACI CCGC 1 cut(s) 220
BspPI GGATC 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 277
BssMI GATC 3 cut(s) 3, 94, 209
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 150, 241
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 6, 97, 212
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 3 cut(s) 3, 94, 209
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 313
CviJI RGCY 2 cut(s) 91, 262
CviKI_1 RGCY 2 cut(s) 91, 262
CviQI GTAC 1 cut(s) 286
DpnI GATC 3 cut(s) 5, 96, 211
DpnII GATC 3 cut(s) 3, 94, 209
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 36, 284
EcoICRI GAGCTC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 1 cut(s) 316
FaiI YATR 6 cut(s) 45, 56, 108, 116, 307, 314
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 104
HapII CCGG 1 cut(s) 175
Hin1II CATG 1 cut(s) 316
HpaII CCGG 1 cut(s) 175
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 3 cut(s) 121, 130, 288
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 3 cut(s) 121, 130, 288
HpyCH4III ACNGT 2 cut(s) 150, 241
HpyCH4V TGCA 4 cut(s) 58, 106, 114, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 3 cut(s) 3, 94, 209
LpnPI CCDG 4 cut(s) 173, 188, 236, 258
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 32
MalI GATC 3 cut(s) 5, 96, 211
MboI GATC 3 cut(s) 3, 94, 209
MboII GAAGA 1 cut(s) 277
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 201, 326
MnlI CCTC 1 cut(s) 187
MseI TTAA 2 cut(s) 158, 236
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 3 cut(s) 3, 94, 209
NlaIII CATG 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 316
PkrI GCNGC 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 53
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 158, 236
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 3 cut(s) 3, 94, 209
SduI GDGCHC 1 cut(s) 93
SetI ASST 4 cut(s) 93, 198, 264, 305
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 2 cut(s) 201, 326
SsiI CCGC 1 cut(s) 220
SstI GAGCTC 1 cut(s) 93
TaaI ACNGT 2 cut(s) 150, 241
TaqI TCGA 2 cut(s) 93, 323
TasI AATT 2 cut(s) 201, 326
TatI WGTACW 1 cut(s) 285
Tru1I TTAA 2 cut(s) 158, 236
Tru9I TTAA 2 cut(s) 158, 236
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 295
XceI RCATGY 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.