Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006445.1

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Reverse (-)

74179 .. 76288

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006445.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggcaaaaccctgtgctactctggcagagaggtttgcttgcacagcctcaatttcagatgacgtccctgaacaacgggtcaaggatacactgcattttctcaaaggagtgggtatctccgaccatgttccagatcactgcgagaccaaagacttctactcctacctcgttcgtggcatcattaagcccctcaacattcaacgaggccgtgtcacctgcctcgtcaccgttaaacctgcttttattaactcttttggtggattccatggaggagctatagctgctgttgctgaggctgtgtcggtagctactgcgagaacggttgtggctgaggataaggagctttttcttggggaactaagcatctcttacctctcttctgctccaaagaatgcagaggtgatagttgatggatctgtagttcggagtggaagaaatcttactgtaatagcacaggagttcaagctcaagaaaactgggaacttgatctacactgctcgtgctaccttctatcacatgcctgtttcgaaattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

178

Amino Acids

19.27

Weight (kDa)

8.9

Isoelectric Point (pI)

25.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	2 cut(s)	224, 244
AclWI	GGATC	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	200, 463
AloI	GAACNNNNNNTCC	2 cut(s)	405, 437
AluBI	AGCT	5 cut(s)	275, 281, 308, 343, 466
AluI	AGCT	5 cut(s)	275, 281, 308, 343, 466
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	421
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	205, 217, 412
AsuII	TTCGAA	1 cut(s)	527
BarI	GAAGNNNNNNTAC	2 cut(s)	424, 456
BauI	CACGAG	1 cut(s)	498
BbvCI	CCTCAGC	2 cut(s)	291, 330
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	192
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	276, 417
BfuAI	ACCTGC	2 cut(s)	224, 244
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	186, 372
BmuI	ACTGGG	1 cut(s)	486
Bpu10I	CCTNAGC	2 cut(s)	291, 330
Bpu14I	TTCGAA	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse1I	ACTGG	1 cut(s)	481
BseDI	CCNNGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	282, 321
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	133, 413, 486
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	283, 322
BspMI	ACCTGC	2 cut(s)	224, 244
BspPI	GGATC	1 cut(s)	421
BspT104I	TTCGAA	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	133, 413, 486
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	229, 322, 445
Bst6I	CTCTTC	1 cut(s)	382
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	291, 330, 359
BstDSI	CCRYGG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	136, 416, 489
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	133, 413, 486
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 44, 281, 287
BstNSI	RCATGY	1 cut(s)	520
BstSFI	CTRYAG	2 cut(s)	276, 417
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	265
BtsI	GCAGTG	3 cut(s)	89, 136, 492
BtsIMutI	CAGTG	3 cut(s)	89, 136, 492
BveI	ACCTGC	2 cut(s)	224, 244
Cac8I	GCNNGC	1 cut(s)	40
CviAII	CATG	3 cut(s)	125, 266, 517
DdeI	CTNAG	3 cut(s)	291, 330, 359
DpnI	GATC	3 cut(s)	135, 415, 488
DpnII	GATC	3 cut(s)	133, 413, 486
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	3 cut(s)	128, 269, 520
FaiI	YATR	5 cut(s)	126, 267, 278, 518, 535
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	3 cut(s)	124, 265, 516
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	128, 269, 520
HinfI	GANTC	1 cut(s)	261
HphI	GGTGA	3 cut(s)	205, 217, 412
Hpy188I	TCNGA	3 cut(s)	58, 121, 426
Hpy188III	TCNNGA	2 cut(s)	131, 469
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	3 cut(s)	229, 322, 445
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	42, 94, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 44, 281, 287
HpyF3I	CTNAG	3 cut(s)	291, 330, 359
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	128, 269, 520
Kzo9I	GATC	3 cut(s)	133, 413, 486
LmnI	GCTCC	3 cut(s)	272, 340, 388
LpnPI	CCDG	8 cut(s)	8, 25, 81, 144, 229, 249, 440, 462
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	186, 372
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	211, 223
MalI	GATC	3 cut(s)	135, 415, 488
MboI	GATC	3 cut(s)	133, 413, 486
MboII	GAAGA	2 cut(s)	369, 444
MflI	RGATCY	1 cut(s)	413
MluCI	AATT	2 cut(s)	51, 530
MmeI	TCCRAC	1 cut(s)	144
MseI	TTAA	3 cut(s)	183, 231, 246
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	4 cut(s)	23, 44, 281, 287
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	133, 413, 486
NlaIII	CATG	3 cut(s)	128, 269, 520
NmuCI	GTSAC	2 cut(s)	211, 223
NspI	RCATGY	1 cut(s)	520
NspV	TTCGAA	1 cut(s)	527
PaqCI	CACCTGC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	283
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PsuI	RGATCY	1 cut(s)	413
SaqAI	TTAA	3 cut(s)	183, 231, 246
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	133, 413, 486
SfaNI	GCATC	2 cut(s)	186, 372
SfcI	CTRYAG	2 cut(s)	276, 417
SfuI	TTCGAA	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	2 cut(s)	51, 530
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	3 cut(s)	229, 322, 445
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	51, 530
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	3 cut(s)	183, 231, 246
Tru9I	TTAA	3 cut(s)	183, 231, 246
TscAI	CASTG	3 cut(s)	96, 143, 499
TseFI	GTSAC	2 cut(s)	211, 223
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	2 cut(s)	211, 223
TspRI	CASTG	3 cut(s)	96, 143, 499
XceI	RCATGY	1 cut(s)	520
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.