Rroxscaffold_1G00026950
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002384
Physical Location & Seq
Forward (+)
33902730 .. 33909897
7168 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00026950.1

Sequence Viewer

Length: 408 bp
ATGAAGATTGAGCCTCCACATTTTGTTCAGAGCTTCCCTCCGTCGCTCTACAACAGGTCACAAAAATTCTTTGGGTATAATTCCACTTTAATCATTGAGAAACTCGCGGCTGCTACTAATGGTCTTAAACCCCTTGCGAAGGTTTTCCAACAATCCTCCTCCACAAAGAATAACTTTTTTGGTGGATTCCATGGAGGAGCTGTAGCTTCTATTGCCGAGGCTGTGTTGGTAGCTACCGCAAGAACGGTTGTGGTTGAGGATAAGGAGCTTTTTCTAGGAGAGCTAAGCATCTCTTACCTCTCTTCTGCTCCAAAGAATAAACAAGAGTACAAAACCAAAAATAAAACAACTACAGCAATTGCGGACAAAACAACCAACAGACCGTATCATATGCAAGAGAACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

135

Amino Acids

14.89

Weight (kDa)

9.58

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 107
AciI CCGC 3 cut(s) 107, 237, 362
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 139
AluBI AGCT 6 cut(s) 33, 200, 206, 233, 268, 283
AluI AGCT 6 cut(s) 33, 200, 206, 233, 268, 283
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 97
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 2 cut(s) 201, 351
BisI GCNGC 2 cut(s) 108, 111
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 2 cut(s) 109, 112
BmsI GCATC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 22, 54
Bpu1102I GCTNAGC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 190, 216
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 190, 216
BseLI CCNNNNNNNGG 1 cut(s) 139
BseRI GAGGAG 2 cut(s) 148, 210
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 139
Bsp1720I GCTNAGC 1 cut(s) 284
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 3 cut(s) 107, 237, 362
BspFNI CGCG 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 190, 216
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 247, 384
Bst6I CTCTTC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSFI CTRYAG 2 cut(s) 201, 351
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 190
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 191
CviJI RGCY 9 cut(s) 13, 33, 110, 200, 206, 221, 233, 268, 283
CviKI_1 RGCY 9 cut(s) 13, 33, 110, 200, 206, 221, 233, 268, 283
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 194
FaiI YATR 4 cut(s) 78, 192, 390, 392
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 277, 309
FatI CATG 1 cut(s) 190
FauNDI CATATG 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 108, 111
Fsp4HI GCNGC 2 cut(s) 108, 111
FspBI CTAG 1 cut(s) 275
GluI GCNGC 2 cut(s) 108, 111
Hin1II CATG 1 cut(s) 194
HinfI GANTC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 247, 384
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 1 cut(s) 194
LmnI GCTCC 3 cut(s) 197, 265, 313
LpnPI CCDG 1 cut(s) 40
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 57
MboII GAAGA 2 cut(s) 16, 294
MfeI CAATTG 1 cut(s) 357
MluCI AATT 3 cut(s) 65, 79, 357
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 8 cut(s) 24, 48, 166, 169, 188, 211, 250, 308
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 2 cut(s) 89, 126
MunI CAATTG 1 cut(s) 357
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 212
NcoI CCATGG 1 cut(s) 190
NdeI CATATG 1 cut(s) 390
NlaIII CATG 1 cut(s) 194
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 109, 112
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 89, 126
SatI GCNGC 2 cut(s) 108, 111
SetI ASST 9 cut(s) 35, 59, 144, 202, 208, 235, 270, 285, 300
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 2 cut(s) 201, 351
SgeI CNNG 9 cut(s) 67, 116, 118, 146, 203, 229, 252, 287, 335
Sse9I AATT 3 cut(s) 65, 79, 357
SsiI CCGC 3 cut(s) 107, 237, 362
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 247, 384
TasI AATT 3 cut(s) 65, 79, 357
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 2 cut(s) 89, 126
Tru9I TTAA 2 cut(s) 89, 126
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 30
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.