pycom01g07430
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002384
Physical Location & Seq
Forward (+)
8332579 .. 8333494
916 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07430.3

Sequence Viewer

Length: 297 bp
ATGGCGAAACCCTCCATTGCAATCACTGAGAGCTTCGCTTCCGAAGCAAAAATTGCAGACGACATTCCTCGGGAAGATGCAATCAGAGTTCTGAAATTTCTCCGAGTTGTTGGAATCTCGGACCCTGTCCCAGATGAGTTCGATGCTAAGGACACCTACTCCGACGTCATTCGTGACCTCCTCAAGCCCCTTCACATTTCCCCAGGCCGTGTCACCTGCGTCGTATCTGTGAAGCCTGCTGTCACTCAAAAATTTCTTTTCTGGATTTCATGGAGGAGCTATTGCTGCTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

99

Amino Acids

10.99

Weight (kDa)

6.54

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 224
AatII GACGTC 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 224
AcsI RAATTY 2 cut(s) 95, 251
AcyI GRCGYC 1 cut(s) 165
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 33, 279
AluI AGCT 2 cut(s) 33, 279
Ama87I CYCGRG 1 cut(s) 69
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 2 cut(s) 95, 251
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 69
AvaII GGWCC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 224
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 67, 133
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 68, 202
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 68, 202
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 18
BseRI GAGGAG 2 cut(s) 170, 289
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 69
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 68, 202
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 27, 147
BstMWI GCNNNNNNNGC 4 cut(s) 44, 53, 285, 291
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 1 cut(s) 208
CviAII CATG 1 cut(s) 270
CviJI RGCY 5 cut(s) 33, 187, 207, 235, 279
CviKI_1 RGCY 5 cut(s) 33, 187, 207, 235, 279
DdeI CTNAG 2 cut(s) 27, 147
Eco47I GGWCC 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 273
FaiI YATR 1 cut(s) 271
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 207
HgaI GACGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 1 cut(s) 273
HinfI GANTC 1 cut(s) 114
HphI GGTGA 1 cut(s) 205
Hpy188I TCNGA 6 cut(s) 43, 86, 93, 104, 121, 163
Hpy188III TCNNGA 3 cut(s) 71, 173, 262
Hpy99I CGWCG 2 cut(s) 167, 224
HpyAV CCTTC 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 20, 56, 80
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 53, 285, 291
HpyF3I CTNAG 2 cut(s) 27, 147
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 1 cut(s) 273
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 7 cut(s) 138, 144, 189, 216, 229, 247, 249
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 2 cut(s) 67, 133
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 173, 211, 241
MboII GAAGA 1 cut(s) 86
MluCI AATT 3 cut(s) 51, 95, 251
MmeI TCCRAC 2 cut(s) 91, 186
MnlI CCTC 5 cut(s) 22, 78, 188, 191, 267
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 4 cut(s) 44, 53, 285, 291
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 3 cut(s) 173, 211, 241
PaqCI CACCTGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 114
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 125
SatI GCNGC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 204
SetI ASST 6 cut(s) 35, 158, 168, 180, 218, 281
SfaNI GCATC 2 cut(s) 67, 133
SinI GGWCC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 3 cut(s) 51, 95, 251
StyD4I CCNGG 1 cut(s) 202
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 51, 95, 251
TfiI GAWTC 1 cut(s) 114
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 3 cut(s) 173, 211, 241
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 3 cut(s) 173, 211, 241
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 1 cut(s) 31
Tth111I GACNNNGTC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 2 cut(s) 95, 251
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.