Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Reverse (-)

12070354 .. 12073629

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13460.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAAAGCCCTCGATTGCTCTCACAGAGAGCTTTGCTTCCAAAGCAACAATTTCAGAGGACATTCCTGAAGAATACTTGAACCGACTGCTGAAGTTTCTTGAAAGAGTGGGGATCTCTGGGGATGTCCCAGATCATTGCAATACCGAAGACTTCTACTCCAACATAATTGGTGGGTTTCTGAAACATCTGGCAATCCTACGAGGCCGCGTCACTTGCTTGGTCTCTGTCAAACCTGCTGTTACTAATACATTTGGAGGATTTCATGGAGGAGCTATTGCTTCTGTTGCTGAGGCTGTGGCGTTTGCTACTGCAAGAACCATCGTGGCTGAGGATAAGGAGCTGTTTCTAGGGGAACTAAGTATCTCATACCTCTCTACTGCACCAAAGAATGCAGAGGTGATAGTTGATGGGTCTGTAGTGCGGAGTGGGAGAAACATAACTGTGGTAGAACAGGAGTTCAAGCTCAAGAAAACTGGAAACTTGGTCTACACTGCTCGTGCTACCTTCTATCATATGCCCGTTTCGAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

179

Amino Acids

19.27

Weight (kDa)

6.91

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_3	PF13622	83 - 170	5.5e-07	Acyl-CoA thioesterase N-terminal domain
4HBT	PF03061	86 - 159	1.7e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	489
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	208, 424
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	2 cut(s)	90, 113
AgsI	TTSAA	3 cut(s)	82, 104, 463
AluBI	AGCT	4 cut(s)	33, 275, 343, 466
AluI	AGCT	4 cut(s)	33, 275, 343, 466
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	412
AsuII	TTCGAA	1 cut(s)	527
BauI	CACGAG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	156
BbvCI	CCTCAGC	2 cut(s)	291, 330
BccI	CCATC	2 cut(s)	329, 404
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	2 cut(s)	291, 330
Bpu14I	TTCGAA	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	282, 321
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	229
Bsp119I	TTCGAA	1 cut(s)	527
Bsp143I	GATC	2 cut(s)	114, 133
BspACI	CCGC	2 cut(s)	208, 424
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	283, 322
BspFNI	CGCG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	481
BssMI	GATC	2 cut(s)	114, 133
BssSI	CACGAG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	527
BstDEI	CTNAG	3 cut(s)	291, 330, 359
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	117, 136
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	114, 133
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 216, 287
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	244
CseI	GACGC	1 cut(s)	199
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	8 cut(s)	10, 33, 207, 275, 296, 329, 343, 466
CviKI_1	RGCY	8 cut(s)	10, 33, 207, 275, 296, 329, 343, 466
DdeI	CTNAG	3 cut(s)	291, 330, 359
DpnI	GATC	2 cut(s)	116, 135
DpnII	GATC	2 cut(s)	114, 133
Eco31I	GGTCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	90, 113
FaeI	CATG	1 cut(s)	269
FaiI	YATR	6 cut(s)	167, 267, 370, 440, 516, 518
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	516
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	207
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	2 cut(s)	58, 183
Hpy188III	TCNNGA	3 cut(s)	68, 101, 469
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	4 cut(s)	141, 314, 383, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 216, 287
HpyF3I	CTNAG	3 cut(s)	291, 330, 359
Hsp92II	CATG	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	114, 133
LmnI	GCTCC	2 cut(s)	272, 340
LpnPI	CCDG	7 cut(s)	81, 105, 144, 176, 249, 440, 462
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	211, 241
MalI	GATC	2 cut(s)	116, 135
MboI	GATC	2 cut(s)	114, 133
MboII	GAAGA	2 cut(s)	83, 161
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	3 cut(s)	51, 168, 530
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	9 cut(s)	22, 52, 197, 251, 263, 286, 325, 383, 391
MslI	CAYNNNNRTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	397
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	44, 216, 287
NdeI	CATATG	1 cut(s)	516
NdeII	GATC	2 cut(s)	114, 133
NlaIII	CATG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	527
PctI	GAATGC	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	443
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	2 cut(s)	114, 133
SetI	ASST	8 cut(s)	35, 238, 277, 345, 375, 402, 468, 509
SfcI	CTRYAG	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	3 cut(s)	51, 168, 530
SsiI	CCGC	2 cut(s)	208, 424
SspMI	CTAG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	14, 527
TasI	AATT	3 cut(s)	51, 168, 530
TauI	GCSGC	1 cut(s)	210
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.