Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006445.1

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Reverse (-)

70740 .. 73714

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006445.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggcaaagctcccaattgctctctcagagagctttgcttccaattccagagcaacaatttccaaagatattcctgaagaacacttgaaccaactgttgaggtttcttgaaagagtggggatctctggcaatgtcccagattattgcaataccgaagacttctattccgacctcattggtggcatcctcaagcccctgacagtcctacgaggccgcatcacttgcttggtctctgtaaaacctgctgttaccaataaatttggaggatttcatggaggagctattgctgctgttgctgaggctgtgtcgtttgctactgcaagaacgattgtggctgaggataaggagctttttctaggggaactaagcatctcttacctctcttctgcaccaaagaatgcagaggtgataattgatggatctgtagtgcggagtgggagaaacttaactgtggtagcactggagttcaagctgaagaaaactgggaacttgatgtacactgctcgtgctaccttatatcacatgcccgtctcgaaattcaccgccgtgatgacgtcgaccgagacggaggacgccgtcgcaccgccatcaccgattaccaagagctcgagtcctgagtttgcgaaggtcagattcgtactccaaatcttccttattcatgttcgattctgcaaccggagagcgtttctctcgccatcggcgaaccagttcacaagcaattcgaaagtccagaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

245

Amino Acids

26.68

Weight (kDa)

9.4

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	557
AciI	CCGC	4 cut(s)	214, 430, 543, 584
AclWI	GGATC	2 cut(s)	128, 427
AcsI	RAATTY	2 cut(s)	257, 536
AcuI	CTGAAG	2 cut(s)	96, 494
AcyI	GRCGYC	2 cut(s)	554, 573
AfaI	GTAC	2 cut(s)	497, 639
AgsI	TTSAA	3 cut(s)	88, 110, 469
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	6 cut(s)	10, 33, 281, 349, 472, 606
AluI	AGCT	6 cut(s)	10, 33, 281, 349, 472, 606
Alw21I	GWGCWC	1 cut(s)	608
Alw26I	GTCTC	3 cut(s)	235, 535, 557
AlwI	GGATC	2 cut(s)	128, 427
Ama87I	CYCGRG	1 cut(s)	607
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	257, 536
Asp700I	GAANNNNTTC	1 cut(s)	707
AsuHPI	GGTGA	3 cut(s)	418, 532, 582
AsuII	TTCGAA	1 cut(s)	722
AvaI	CYCGRG	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	608
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	608
BbvCI	CCTCAGC	2 cut(s)	297, 336
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	3 cut(s)	410, 595, 703
BceAI	ACGGC	2 cut(s)	530, 560
BcoDI	GTCTC	3 cut(s)	235, 535, 557
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	214, 288
BlsI	GCNGC	2 cut(s)	215, 289
BmeT110I	CYCGRG	1 cut(s)	607
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	3 cut(s)	192, 225, 378
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	2 cut(s)	297, 336
Bpu14I	TTCGAA	1 cut(s)	722
BpuEI	CTTGAG	1 cut(s)	173
BsaHI	GRCGYC	2 cut(s)	554, 573
BsaI	GGTCTC	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	675
Bse1I	ACTGG	3 cut(s)	465, 487, 706
Bse3DI	GCAATG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	4 cut(s)	39, 288, 327, 606
BseNI	ACTGG	3 cut(s)	465, 487, 706
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	608
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	676
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	3 cut(s)	235, 535, 557
BsmBI	CGTCTC	2 cut(s)	535, 557
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	607
Bsp119I	TTCGAA	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	120, 419
BspACI	CCGC	4 cut(s)	214, 430, 543, 584
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	4 cut(s)	38, 289, 328, 607
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	2 cut(s)	128, 427
BspT104I	TTCGAA	1 cut(s)	722
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	465, 487, 706
BssMI	GATC	2 cut(s)	120, 419
BssNI	GRCGYC	2 cut(s)	554, 573
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	96, 202, 451
Bst6I	CTCTTC	1 cut(s)	388
BstACI	GRCGYC	2 cut(s)	554, 573
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	495
BstBI	TTCGAA	1 cut(s)	722
BstDEI	CTNAG	5 cut(s)	25, 297, 336, 365, 615
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	123, 422
BstMAI	GTCTC	3 cut(s)	235, 535, 557
BstMBI	GATC	2 cut(s)	120, 419
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 287, 293
BstNSI	RCATGY	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	120, 419
BstYI	RGATCY	2 cut(s)	120, 419
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	458, 498
BveI	ACCTGC	1 cut(s)	250
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	496, 638
CviAII	CATG	3 cut(s)	272, 523, 659
CviQI	GTAC	2 cut(s)	496, 638
DdeI	CTNAG	5 cut(s)	25, 297, 336, 365, 615
DpnI	GATC	2 cut(s)	122, 421
DpnII	GATC	2 cut(s)	120, 419
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Ecl136II	GAGCTC	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	96, 494
Eco88I	CYCGRG	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	608
Esp3I	CGTCTC	2 cut(s)	535, 557
FaeI	CATG	3 cut(s)	275, 526, 662
FaiI	YATR	4 cut(s)	273, 517, 524, 660
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	271, 522, 658
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	2 cut(s)	214, 288
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	214, 288
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	2 cut(s)	214, 288
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	676
HgaI	GACGC	1 cut(s)	581
Hin1I	GRCGYC	2 cut(s)	554, 573
Hin1II	CATG	3 cut(s)	275, 526, 662
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HinfI	GANTC	3 cut(s)	610, 633, 666
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	3 cut(s)	418, 532, 582
Hpy166II	GTNNAC	3 cut(s)	498, 558, 711
Hpy188I	TCNGA	3 cut(s)	28, 169, 632
Hpy188III	TCNNGA	6 cut(s)	48, 74, 107, 532, 614, 730
Hpy8I	GTNNAC	3 cut(s)	498, 558, 711
Hpy99I	CGWCG	2 cut(s)	559, 581
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	3 cut(s)	96, 202, 451
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	5 cut(s)	147, 320, 389, 401, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 287, 293
HpyF3I	CTNAG	5 cut(s)	25, 297, 336, 365, 615
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	2 cut(s)	554, 573
Hsp92II	CATG	3 cut(s)	275, 526, 662
Kzo9I	GATC	2 cut(s)	120, 419
LmnI	GCTCC	3 cut(s)	15, 278, 346
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	3 cut(s)	192, 225, 378
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	122, 421
MboI	GATC	2 cut(s)	120, 419
MboII	GAAGA	5 cut(s)	89, 167, 375, 487, 640
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	2 cut(s)	120, 419
MhlI	GDGCHC	1 cut(s)	608
MluCI	AATT	7 cut(s)	15, 43, 57, 257, 411, 536, 718
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	545
MspI	CCGG	1 cut(s)	676
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	3 cut(s)	222, 287, 293
NdeII	GATC	2 cut(s)	120, 419
NlaIII	CATG	3 cut(s)	275, 526, 662
NspI	RCATGY	1 cut(s)	526
NspV	TTCGAA	1 cut(s)	722
OliI	CACNNNNGTG	1 cut(s)	545
PaeR7I	CTCGAG	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	698
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	2 cut(s)	633, 666
PflFI	GACNNNGTC	1 cut(s)	575
PkrI	GCNGC	2 cut(s)	215, 289
PleI	GAGTC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	618
Psp124BI	GAGCTC	1 cut(s)	608
PspXI	VCTCGAGB	1 cut(s)	607
PsrI	GAACNNNNNNTAC	2 cut(s)	479, 511
PsuI	RGATCY	2 cut(s)	120, 419
PsyI	GACNNNGTC	1 cut(s)	575
RsaI	GTAC	2 cut(s)	497, 639
RsaNI	GTAC	2 cut(s)	496, 638
RseI	CAYNNNNRTG	1 cut(s)	545
SacI	GAGCTC	1 cut(s)	608
SalI	GTCGAC	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	2 cut(s)	214, 288
Sau3AI	GATC	2 cut(s)	120, 419
SchI	GAGTC	1 cut(s)	619
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	3 cut(s)	192, 225, 378
SfcI	CTRYAG	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	607
SfuI	TTCGAA	1 cut(s)	722
SlaI	CTCGAG	1 cut(s)	607
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	2 cut(s)	188, 607
SmoI	CTYRAG	2 cut(s)	188, 607
Sse9I	AATT	7 cut(s)	15, 43, 57, 257, 411, 536, 718
SsiI	CCGC	4 cut(s)	214, 430, 543, 584
SspMI	CTAG	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	608
TaaI	ACNGT	3 cut(s)	96, 202, 451
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	5 cut(s)	533, 557, 608, 664, 722
TaqII	GACCGA	1 cut(s)	575
TasI	AATT	7 cut(s)	15, 43, 57, 257, 411, 536, 718
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	633, 666
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	2 cut(s)	465, 505
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	260, 647
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	2 cut(s)	465, 505
Tth111I	GACNNNGTC	1 cut(s)	575
XapI	RAATTY	2 cut(s)	257, 536
XceI	RCATGY	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	1 cut(s)	356
ZraI	GACGTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.