Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Reverse (-)

45752414 .. 45754510

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGGAAAATGGCAAAGCCCTGTGGTACTCTGGCAGAGAGCTTTGCTTGCACAGCCACAATTTCAGATGACGTCCCTGAACAACAGGTCAAGGATACGCTGCATTTTCTCAAACGAGTGGGTATCTCCGACCCTGTTCCAGATCACTGCGAGACCAAAGACTTCTACTCCTACCTCGTTCGTGGCATCATTAAGCCCCTCAACATTCAACGAGGCCGTGTCACCTGCCTCGTCTCCGTTAAACCTGCTTTTATTAACTCTTTTGGTGGATTCCATGGAGGAGCTATAGCTGCTGTTGCTGAGGCTGTGTTGGTAGCTACTGCGAGAACGGTTGTGGCTGAGGATAAGGAGCTTTTTCTTGGGGAACTAAGCATCTCTTACCTCTCTTCCGCTCCAAAGAATGCAGAGGTGATAGTTGATGGATCTGTAGTTCGGAGTGGAAGAAACATTACTGTAATAGCACTGGAGTTCAAGCTCAAGAAAACTGGGAACTTGATCTACACTGCTCGTGCTACCTTCTATCATATGCCTGTTTCGAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

181

Amino Acids

19.65

Weight (kDa)

9.06

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_3	PF13622	87 - 173	1.8e-07	Acyl-CoA thioesterase N-terminal domain
4HBT	PF03061	89 - 162	9.1e-09	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
AatII	GACGTC	1 cut(s)	75
Acc36I	ACCTGC	2 cut(s)	233, 253
AccBSI	CCGCTC	1 cut(s)	392
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	209, 472
AloI	GAACNNNNNNTCC	2 cut(s)	414, 446
AluBI	AGCT	6 cut(s)	42, 284, 290, 317, 352, 475
AluI	AGCT	6 cut(s)	42, 284, 290, 317, 352, 475
Alw26I	GTCTC	2 cut(s)	146, 238
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	100, 290
AsuHPI	GGTGA	2 cut(s)	214, 421
AsuII	TTCGAA	1 cut(s)	536
BarI	GAAGNNNNNNTAC	2 cut(s)	433, 465
BauI	CACGAG	1 cut(s)	507
BbvCI	CCTCAGC	2 cut(s)	300, 339
BbvI	GCAGC	2 cut(s)	87, 277
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	146, 238
BfmI	CTRYAG	2 cut(s)	285, 426
BfuAI	ACCTGC	2 cut(s)	233, 253
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	101, 291
BlsI	GCNGC	2 cut(s)	102, 292
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	195, 381
BmuI	ACTGGG	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	2 cut(s)	300, 339
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse1I	ACTGG	2 cut(s)	468, 490
BseDI	CCNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	291, 330
BseNI	ACTGG	2 cut(s)	468, 490
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	87, 277
BshFI	GGCC	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	146, 238
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	536
Bsp143I	GATC	3 cut(s)	142, 422, 495
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	292, 331
BspMI	ACCTGC	2 cut(s)	233, 253
BspPI	GGATC	1 cut(s)	430
BspT104I	TTCGAA	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	468, 490
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	3 cut(s)	142, 422, 495
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	331, 454
Bst6I	CTCTTC	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	300, 339, 368
BstDSI	CCRYGG	1 cut(s)	274
BstKTI	GATC	3 cut(s)	145, 425, 498
BstMAI	GTCTC	2 cut(s)	146, 238
BstMBI	GATC	3 cut(s)	142, 422, 495
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 53, 290, 296
BstSFI	CTRYAG	2 cut(s)	285, 426
BstV1I	GCAGC	2 cut(s)	87, 277
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	274
BtsI	GCAGTG	2 cut(s)	145, 501
BtsIMutI	CAGTG	3 cut(s)	145, 461, 501
BveI	ACCTGC	2 cut(s)	233, 253
Cac8I	GCNNGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	3 cut(s)	300, 339, 368
DpnI	GATC	3 cut(s)	144, 424, 497
DpnII	GATC	3 cut(s)	142, 422, 495
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	276, 287, 525, 527, 544
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	274
FauNDI	CATATG	1 cut(s)	525
Fnu4HI	GCNGC	2 cut(s)	101, 291
Fsp4HI	GCNGC	2 cut(s)	101, 291
GluI	GCNGC	2 cut(s)	101, 291
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	1 cut(s)	270
HphI	GGTGA	2 cut(s)	214, 421
Hpy188I	TCNGA	3 cut(s)	67, 130, 435
Hpy188III	TCNNGA	2 cut(s)	140, 478
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	2 cut(s)	331, 454
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	51, 103, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 53, 290, 296
HpyF3I	CTNAG	3 cut(s)	300, 339, 368
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	142, 422, 495
LmnI	GCTCC	3 cut(s)	281, 349, 397
Lsp1109I	GCAGC	2 cut(s)	87, 277
LweI	GCATC	2 cut(s)	195, 381
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	144, 424, 497
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	3 cut(s)	142, 422, 495
MboII	GAAGA	2 cut(s)	378, 453
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	2 cut(s)	60, 539
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	9 cut(s)	185, 206, 209, 239, 272, 295, 334, 392, 400
MseI	TTAA	3 cut(s)	192, 240, 255
Mva1269I	GAATGC	1 cut(s)	406
MwoI	GCNNNNNNNGC	4 cut(s)	48, 53, 290, 296
NcoI	CCATGG	1 cut(s)	274
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	3 cut(s)	142, 422, 495
NlaIII	CATG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	102, 292
PsrI	GAACNNNNNNTAC	2 cut(s)	482, 514
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	192, 240, 255
SatI	GCNGC	2 cut(s)	101, 291
Sau3AI	GATC	3 cut(s)	142, 422, 495
SfaNI	GCATC	2 cut(s)	195, 381
SfcI	CTRYAG	2 cut(s)	285, 426
SfuI	TTCGAA	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	60, 539
SsiI	CCGC	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	331, 454
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	536
TasI	AATT	2 cut(s)	60, 539
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	192, 240, 255
Tru9I	TTAA	3 cut(s)	192, 240, 255
TscAI	CASTG	3 cut(s)	152, 468, 508
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	100, 290
Tsp45I	GTSAC	1 cut(s)	220
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	3 cut(s)	152, 468, 508
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.