Rh1CG228800
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002384
Physical Location & Seq
Reverse (-)
48340740 .. 48342283
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG228800.1

Sequence Viewer

Length: 543 bp
ATGGCAAAGCCCCCAATTGCTCTCTCAGAGAGCTTTGCTTCCAATTCCAGAGCAACAGTTTCTAAAGACATTCCTGAAGAACACTTGAACCAACTGCTGAGGTTTCTTGAAAGAGTGGGGATCTCTGGCAATGTCCCAGATTATTGCAATACCGAAGACTTCTATTCCGACCTCATTGGTGGCATCCTCAAGCCCCTGACAGTCCTACGAGGCCGCATCACTTGCTTGGTCTCTGTAAAACCTGCTGTTACTAATAAATTTGGAGGATTTCATGGAGGAGCTATTGCTGCTGTTGCTGAGGCTGTGTCGTTTGCTACTGCAAGAACGGTCGTGGCTGAGGATAAGGAGCTTTTTCTAGGGGAACTAAGCATCTCTTACCTCTCTTCTGCACCAAAGAATGCAGAGGTGATAATTGATGGATCTGTAGTGCGGAGTGGGAGAAACTTAACTGTGGTAGCACAGGAGTTCAAGCTGAAGAAAACTGGCAACTTGATGTACACTGCTCGTGCTACCTTATATCACATGCCCGTCTCGAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

180

Amino Acids

19.39

Weight (kDa)

8.89

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 88 - 161 2.5e-09 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AciI CCGC 2 cut(s) 214, 430
AclWI GGATC 2 cut(s) 128, 427
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 2 cut(s) 96, 494
AfaI GTAC 1 cut(s) 497
AgsI TTSAA 3 cut(s) 88, 110, 469
AluBI AGCT 4 cut(s) 33, 281, 349, 472
AluI AGCT 4 cut(s) 33, 281, 349, 472
Alw26I GTCTC 2 cut(s) 235, 535
AlwI GGATC 2 cut(s) 128, 427
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 418
BauI CACGAG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 162
BbvCI CCTCAGC 3 cut(s) 98, 297, 336
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 235, 535
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 2 cut(s) 214, 288
BlsI GCNGC 2 cut(s) 215, 289
BmsI GCATC 3 cut(s) 192, 225, 378
BpiI GAAGAC 1 cut(s) 162
Bpu10I CCTNAGC 3 cut(s) 98, 297, 336
BpuEI CTTGAG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 1 cut(s) 136
BseGI GGATG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 4 cut(s) 39, 89, 288, 327
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 235, 535
BsmBI CGTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 2 cut(s) 120, 419
BspACI CCGC 2 cut(s) 214, 430
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 4 cut(s) 38, 90, 289, 328
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 2 cut(s) 128, 427
BspTNI GGTCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 1 cut(s) 487
BssMI GATC 2 cut(s) 120, 419
BssSI CACGAG 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 504
Bst4CI ACNGT 4 cut(s) 58, 202, 328, 451
Bst6I CTCTTC 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 495
BstDEI CTNAG 5 cut(s) 25, 98, 297, 336, 365
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 2 cut(s) 123, 422
BstMAI GTCTC 2 cut(s) 235, 535
BstMBI GATC 2 cut(s) 120, 419
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 3 cut(s) 222, 287, 293
BstNSI RCATGY 1 cut(s) 526
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 2 cut(s) 120, 419
BstYI RGATCY 2 cut(s) 120, 419
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 498
BveI ACCTGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 496
CviAII CATG 2 cut(s) 272, 523
CviJI RGCY 9 cut(s) 10, 33, 193, 213, 281, 302, 335, 349, 472
CviKI_1 RGCY 9 cut(s) 10, 33, 193, 213, 281, 302, 335, 349, 472
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 5 cut(s) 25, 98, 297, 336, 365
DpnI GATC 2 cut(s) 122, 421
DpnII GATC 2 cut(s) 120, 419
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 96, 494
Esp3I CGTCTC 1 cut(s) 535
FaeI CATG 2 cut(s) 275, 526
FaiI YATR 3 cut(s) 273, 517, 524
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 271, 522
Fnu4HI GCNGC 2 cut(s) 214, 288
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 214, 288
FspBI CTAG 1 cut(s) 356
GluI GCNGC 2 cut(s) 214, 288
HaeIII GGCC 1 cut(s) 213
Hin1II CATG 2 cut(s) 275, 526
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 2 cut(s) 28, 169
Hpy188III TCNNGA 4 cut(s) 48, 74, 107, 532
Hpy8I GTNNAC 1 cut(s) 498
HpyCH4III ACNGT 4 cut(s) 58, 202, 328, 451
HpyCH4V TGCA 4 cut(s) 147, 320, 389, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 287, 293
HpyF3I CTNAG 5 cut(s) 25, 98, 297, 336, 365
Hsp92II CATG 2 cut(s) 275, 526
Kzo9I GATC 2 cut(s) 120, 419
LmnI GCTCC 2 cut(s) 278, 346
LpnPI CCDG 8 cut(s) 61, 87, 111, 150, 209, 255, 446, 468
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 3 cut(s) 192, 225, 378
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 122, 421
MboI GATC 2 cut(s) 120, 419
MboII GAAGA 4 cut(s) 89, 167, 375, 487
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 2 cut(s) 120, 419
MluCI AATT 5 cut(s) 15, 43, 257, 411, 536
MmeI TCCRAC 1 cut(s) 192
MseI TTAA 1 cut(s) 446
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 403
MwoI GCNNNNNNNGC 3 cut(s) 222, 287, 293
NdeII GATC 2 cut(s) 120, 419
NlaIII CATG 2 cut(s) 275, 526
NspI RCATGY 1 cut(s) 526
PctI GAATGC 1 cut(s) 403
PkrI GCNGC 2 cut(s) 215, 289
PsuI RGATCY 2 cut(s) 120, 419
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 2 cut(s) 214, 288
Sau3AI GATC 2 cut(s) 120, 419
SfaNI GCATC 3 cut(s) 192, 225, 378
SfcI CTRYAG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 5 cut(s) 15, 43, 257, 411, 536
SsiI CCGC 2 cut(s) 214, 430
SspMI CTAG 1 cut(s) 356
TaaI ACNGT 4 cut(s) 58, 202, 328, 451
TaqI TCGA 1 cut(s) 533
TasI AATT 5 cut(s) 15, 43, 257, 411, 536
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 1 cut(s) 505
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 260
TspRI CASTG 1 cut(s) 505
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 526
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.