Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00604

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Forward (+)

2327 .. 4644

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTTCAGGGGATGGTATTTGATCTTGAGAAGGGGTCGACATTATATATAGATCTAGCAAATCTAATTCTAGCTCCAAGCGCTCAAGAACAGGTATATAGCTGGTCGGATTTACTTTGTACGCTTAGTCACTTATCCTTTCGTCGTTATTTCTGCATTTTGACTGTCTTGGAACTGCAATTTAACTCTGTTTTAAATTTTAGTAGCAGTTTTCACGTAAAATTAACTTCAATTTGCAGCCCACCCGATTTTTCAATTCTAGCAGAGGTGATAGTTGATGGATCTGTAGTTCGGAGTGGAAGAAATCTTACTGTAATAGCACAGGAGTTCAAGCTCAAGAAAACTGGAAACTTGATCTACACTGCTCGTGCTACCTTCTATCACATGCCTGTTTCGAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

7.73

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	1 cut(s)	121
AfeI	AGCGCT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	231, 255, 331
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	3 cut(s)	74, 102, 334
AluI	AGCT	3 cut(s)	74, 102, 334
AlwI	GGATC	1 cut(s)	289
Aor51HI	AGCGCT	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	395
BarI	GAAGNNNNNNTAC	2 cut(s)	292, 324
BauI	CACGAG	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	2 cut(s)	7, 272
BfaI	CTAG	3 cut(s)	56, 71, 260
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	84
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	395
BpuEI	CTTGAG	3 cut(s)	47, 69, 320
BsaAI	YACGTR	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	22, 52, 281, 354
BspPI	GGATC	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	4 cut(s)	22, 52, 281, 354
BssSI	CACGAG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	166, 313
BstBAI	YACGTR	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	4 cut(s)	25, 55, 284, 357
BstMBI	GATC	4 cut(s)	22, 52, 281, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	249
BstX2I	RGATCY	2 cut(s)	52, 281
BstYI	RGATCY	2 cut(s)	52, 281
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
CfoI	GCGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	4 cut(s)	74, 102, 240, 334
CviKI_1	RGCY	4 cut(s)	74, 102, 240, 334
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	4 cut(s)	24, 54, 283, 356
DpnII	GATC	4 cut(s)	22, 52, 281, 354
DraI	TTTAAA	1 cut(s)	195
Eco47III	AGCGCT	1 cut(s)	82
FaeI	CATG	1 cut(s)	388
FaiI	YATR	7 cut(s)	46, 48, 50, 97, 99, 386, 403
FatI	CATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	3 cut(s)	56, 71, 260
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	238
HaeII	RGCGCY	1 cut(s)	84
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	388
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	109, 294
Hpy188III	TCNNGA	3 cut(s)	26, 86, 337
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	25, 385
HpyCH4III	ACNGT	2 cut(s)	166, 313
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	156, 178, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	388
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	22, 52, 281, 354
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	4 cut(s)	77, 88, 308, 330
Lsp1109I	GCAGC	1 cut(s)	249
MaeI	CTAG	3 cut(s)	56, 71, 260
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	4 cut(s)	24, 54, 283, 356
MboI	GATC	4 cut(s)	22, 52, 281, 354
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	2 cut(s)	52, 281
MluCI	AATT	7 cut(s)	66, 179, 196, 221, 231, 255, 398
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	259
MseI	TTAA	3 cut(s)	183, 194, 224
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	4 cut(s)	22, 52, 281, 354
NlaIII	CATG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	52, 281
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	183, 194, 224
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	4 cut(s)	22, 52, 281, 354
SetI	ASST	7 cut(s)	76, 96, 104, 219, 270, 336, 377
SfcI	CTRYAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	395
SmlI	CTYRAG	3 cut(s)	26, 84, 335
SmoI	CTYRAG	3 cut(s)	26, 84, 335
Sse9I	AATT	7 cut(s)	66, 179, 196, 221, 231, 255, 398
SspMI	CTAG	3 cut(s)	56, 71, 260
TaaI	ACNGT	2 cut(s)	166, 313
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	38, 395
TasI	AATT	7 cut(s)	66, 179, 196, 221, 231, 255, 398
Tru1I	TTAA	3 cut(s)	183, 194, 224
Tru9I	TTAA	3 cut(s)	183, 194, 224
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	128
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	3 cut(s)	56, 71, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.