Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Reverse (-)

22657455 .. 22658582

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAATTGGGCAAAATTCCGTGAAACTGGGAGCCCAGAAGACACCGACATGTCTTCTACTCCGATCTCGTCCGACACGACGGCGGTGTCCAAAGTGATCGATCCAAATTACGTATTAATGGTTGCTGATTTCTTCAAAGCTATTTCCCCAGACGAATCTTGCAACGATTTCACCTCTTTCGACTCTTTCTCCGTCTTATTTCAAAACAATACCAGAGCTCTCTCCATCGCACGCGGCCGTGTCTCGTGCTCCGTCACCGTCACGCCAGGCATATCCAATTTCTTTAAGGGGTTACATGGAGGAGCGGTGGCATCAATTGCAGAGAGAGTAGCGATGGCTTGTGTGAAAACTGTTGTGTCTGAAGACAAACATCTGTTCATTGGTGAATTGAGTATGTCTTATCTCTCTTCTGCTCCTATTTCGAGTGAATTGTTGGTGGAGGGAACGGTGGTGAGGACTGGGAGGAATCTGTCGGTGGTGACTGTTGAGTTCAAGATCAAGGAGACCATGAAAGTCACTTACCTATCTCGTGCTACTTTTTACCATTCTCCCATCTCTAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

188

Amino Acids

20.47

Weight (kDa)

6.29

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_3	PF13622	97 - 168	1.5e-07	Acyl-CoA thioesterase N-terminal domain
4HBT	PF03061	98 - 172	8.6e-14	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	305
AccII	CGCG	1 cut(s)	234
AciI	CCGC	3 cut(s)	83, 234, 305
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	381
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	136, 203, 493
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	3 cut(s)	140, 218, 562
AluI	AGCT	3 cut(s)	140, 218, 562
Alw21I	GWGCWC	2 cut(s)	220, 251
Alw26I	GTCTC	2 cut(s)	247, 497
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	14
AseI	ATTAAT	1 cut(s)	116
AsuHPI	GGTGA	5 cut(s)	163, 247, 395, 463, 490
BanII	GRGCYC	2 cut(s)	35, 220
BauI	CACGAG	2 cut(s)	244, 528
BbsI	GAAGAC	3 cut(s)	45, 45, 369
Bbv12I	GWGCWC	2 cut(s)	220, 251
BccI	CCATC	3 cut(s)	233, 328, 560
BceAI	ACGGC	2 cut(s)	96, 222
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	247, 497
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	2 cut(s)	36, 468
BmsI	GCATC	1 cut(s)	320
BmuI	ACTGGG	2 cut(s)	36, 468
BpiI	GAAGAC	3 cut(s)	45, 45, 369
Bsa29I	ATCGAT	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	497
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 291, 321
Bse1I	ACTGG	2 cut(s)	31, 463
BseBI	CCWGG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	31, 463
BseRI	GAGGAG	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	237
BshVI	ATCGAT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	220, 251
BsmAI	GTCTC	2 cut(s)	247, 497
BsnI	GGCC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	3 cut(s)	35, 220, 251
Bsp143I	GATC	4 cut(s)	63, 96, 100, 495
BspACI	CCGC	3 cut(s)	83, 234, 305
BspANI	GGCC	1 cut(s)	237
BspDI	ATCGAT	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	31, 463
BssMI	GATC	4 cut(s)	63, 96, 100, 495
BssSI	CACGAG	2 cut(s)	244, 528
Bst2BI	CACGAG	2 cut(s)	244, 528
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	4 cut(s)	259, 352, 448, 484
Bst6I	CTCTTC	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	558
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	4 cut(s)	66, 99, 103, 498
BstMAI	GTCTC	2 cut(s)	247, 497
BstMBI	GATC	4 cut(s)	63, 96, 100, 495
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	265
BstSNI	TACGTA	1 cut(s)	112
BstUI	CGCG	1 cut(s)	234
BstV2I	GAAGAC	3 cut(s)	45, 45, 369
BstZI	CGGCCG	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	99
BtgZI	GCGATG	2 cut(s)	211, 347
Cac8I	GCNNGC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	99
CviAII	CATG	3 cut(s)	49, 296, 508
CviJI	RGCY	6 cut(s)	33, 140, 218, 237, 338, 562
CviKI_1	RGCY	6 cut(s)	33, 140, 218, 237, 338, 562
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	4 cut(s)	65, 98, 102, 497
DpnII	GATC	4 cut(s)	63, 96, 100, 495
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	235
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	218
EclXI	CGGCCG	1 cut(s)	235
Eco105I	TACGTA	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	35, 220
Eco31I	GGTCTC	1 cut(s)	497
Eco52I	CGGCCG	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	35, 220
FaeI	CATG	3 cut(s)	52, 299, 511
FaiI	YATR	5 cut(s)	50, 272, 297, 395, 509
FatI	CATG	3 cut(s)	48, 295, 507
Fnu4HI	GCNGC	1 cut(s)	235
FriOI	GRGCYC	2 cut(s)	35, 220
Fsp4HI	GCNGC	1 cut(s)	235
GluI	GCNGC	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	52, 299, 511
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	3 cut(s)	155, 182, 466
HphI	GGTGA	5 cut(s)	163, 247, 395, 463, 490
Hpy188I	TCNGA	3 cut(s)	63, 73, 361
Hpy188III	TCNNGA	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	4 cut(s)	259, 352, 448, 484
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	162, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	52, 299, 511
Kzo9I	GATC	4 cut(s)	63, 96, 100, 495
LmnI	GCTCC	4 cut(s)	30, 254, 302, 418
LpnPI	CCDG	7 cut(s)	12, 48, 162, 226, 252, 279, 444
LweI	GCATC	1 cut(s)	320
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	5 cut(s)	253, 259, 291, 478, 514
MalI	GATC	4 cut(s)	65, 98, 102, 497
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	4 cut(s)	63, 96, 100, 495
MboII	GAAGA	5 cut(s)	45, 50, 124, 374, 399
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	3 cut(s)	35, 220, 251
MluCI	AATT	7 cut(s)	4, 14, 106, 277, 315, 386, 428
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	184, 293, 433, 447, 456
MseI	TTAA	3 cut(s)	116, 285, 565
MslI	CAYNNNNRTG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	4 cut(s)	63, 96, 100, 495
NlaIII	CATG	3 cut(s)	52, 299, 511
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	4 cut(s)	253, 259, 478, 514
NspI	RCATGY	1 cut(s)	52
PciI	ACATGT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	155, 466
PkrI	GCNGC	1 cut(s)	236
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	112
PscI	ACATGT	1 cut(s)	48
PshBI	ATTAAT	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	116, 285, 565
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	4 cut(s)	63, 96, 100, 495
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	3 cut(s)	35, 220, 251
SetI	ASST	6 cut(s)	114, 142, 176, 220, 525, 564
SfaNI	GCATC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	47
SnaBI	TACGTA	1 cut(s)	112
Sse9I	AATT	7 cut(s)	4, 14, 106, 277, 315, 386, 428
SsiI	CCGC	3 cut(s)	83, 234, 305
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	4 cut(s)	259, 352, 448, 484
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	99, 180, 422
TasI	AATT	7 cut(s)	4, 14, 106, 277, 315, 386, 428
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	155, 466
Tru1I	TTAA	3 cut(s)	116, 285, 565
Tru9I	TTAA	3 cut(s)	116, 285, 565
TseFI	GTSAC	4 cut(s)	253, 259, 478, 514
Tsp45I	GTSAC	4 cut(s)	253, 259, 478, 514
TspDTI	ATGAA	3 cut(s)	17, 367, 524
TspGWI	ACGGA	3 cut(s)	8, 181, 241
VspI	ATTAAT	1 cut(s)	116
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.