Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Forward (+)

29488142 .. 29491661

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAACCCTAATAAATGCTTATCTGGTAAGAAGAGAATTGGCTATGGGGGTCATGATCTTGGAGTGTACAACGTGAAAGATAATATTATGAAGCCAATGCCATGTTATTTGACATTTGATCGCTGGATTATAAATCCACCACCCTTTTGGATTGTTCCTGATATAATCCATGGTTTTGCTCTATTCCAGATCATTACGACACCAAAGACTTCTACTCCTACCTCGTTCGTGGCATCCTTAAGCCCCTCAACATTCAACAAAGCTGTGTCATCTGCCTCCTTCTTCGTTAAACCTGCTTTTATTAACTTTTTTGGTGGATTCCATGGAGGAGCTATAGCTTCTCTTGCTGAGGTTGTGTTGGTAGCTACTGCAAGAACAGTTGTGGTTGAGGATAAGGAGCTTTTTCTAGGGGAACTAAGCATCTCTTACCTCTCTTCTGCTCCAAAGAATATGCAGAGAACAGTCTCGTTGACACTGTCCGAGTTTAGTTTCCCATTAATTTTCTGGGCGCAGCTTCATTTTCTGTTTTCTACATCTGTCTCTTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

183

Amino Acids

20.21

Weight (kDa)

8.93

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	68
AflII	CTTAAG	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	6 cut(s)	263, 332, 338, 365, 400, 514
AluI	AGCT	6 cut(s)	263, 332, 338, 365, 400, 514
Alw26I	GTCTC	2 cut(s)	469, 544
ApeKI	GCWGC	1 cut(s)	511
AseI	ATTAAT	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	511
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	469, 544
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
BmsI	GCATC	2 cut(s)	242, 429
Bpu10I	CCTNAGC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	169, 322
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
BseDI	CCNNGG	2 cut(s)	169, 322
BseGI	GGATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	469, 544
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	55, 118, 189
Bsp19I	CCATGG	2 cut(s)	169, 322
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	238
BsrGI	TGTACA	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	169, 322
BssMI	GATC	3 cut(s)	55, 118, 189
BssT1I	CCWWGG	2 cut(s)	169, 322
Bst4CI	ACNGT	3 cut(s)	379, 463, 477
Bst6I	CTCTTC	2 cut(s)	26, 439
BstAFI	CTTAAG	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	348, 416
BstDSI	CCRYGG	2 cut(s)	169, 322
BstF5I	GGATG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	3 cut(s)	58, 121, 192
BstMAI	GTCTC	2 cut(s)	469, 544
BstMBI	GATC	3 cut(s)	55, 118, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	523
BstXI	CCANNNNNNTGG	1 cut(s)	147
BtgI	CCRYGG	2 cut(s)	169, 322
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	301
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	4 cut(s)	53, 102, 170, 323
CviJI	RGCY	9 cut(s)	42, 94, 243, 263, 332, 338, 365, 400, 514
CviKI_1	RGCY	9 cut(s)	42, 94, 243, 263, 332, 338, 365, 400, 514
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	348, 416
DpnI	GATC	3 cut(s)	57, 120, 191
DpnII	GATC	3 cut(s)	55, 118, 189
Eam1104I	CTCTTC	2 cut(s)	26, 439
EarI	CTCTTC	2 cut(s)	26, 439
Eco130I	CCWWGG	2 cut(s)	169, 322
EcoT14I	CCWWGG	2 cut(s)	169, 322
ErhI	CCWWGG	2 cut(s)	169, 322
FaeI	CATG	4 cut(s)	56, 105, 173, 326
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FatI	CATG	4 cut(s)	52, 101, 169, 322
Fnu4HI	GCNGC	1 cut(s)	512
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	512
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	1 cut(s)	512
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	4 cut(s)	56, 105, 173, 326
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	318
Hpy166II	GTNNAC	2 cut(s)	67, 471
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	3 cut(s)	53, 158, 187
Hpy8I	GTNNAC	2 cut(s)	67, 471
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	3 cut(s)	379, 463, 477
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	371, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	348, 416
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	56, 105, 173, 326
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	3 cut(s)	55, 118, 189
LmnI	GCTCC	3 cut(s)	329, 397, 445
LpnPI	CCDG	6 cut(s)	9, 109, 171, 200, 306, 490
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	2 cut(s)	242, 429
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	72
MalI	GATC	3 cut(s)	57, 120, 191
MboI	GATC	3 cut(s)	55, 118, 189
MboII	GAAGA	3 cut(s)	43, 274, 426
MluCI	AATT	2 cut(s)	36, 498
MnlI	CCTC	7 cut(s)	232, 256, 286, 320, 343, 382, 440
MseI	TTAA	4 cut(s)	239, 288, 303, 497
MspCI	CTTAAG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	344
NcoI	CCATGG	2 cut(s)	169, 322
NdeII	GATC	3 cut(s)	55, 118, 189
NlaIII	CATG	4 cut(s)	56, 105, 173, 326
PagI	TCATGA	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	318
PflFI	GACNNNGTC	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	513
PshBI	ATTAAT	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	475
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	239, 288, 303, 497
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	3 cut(s)	55, 118, 189
SfaNI	GCATC	2 cut(s)	242, 429
SfcI	CTRYAG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	36, 498
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	407
StyI	CCWWGG	2 cut(s)	169, 322
TaaI	ACNGT	3 cut(s)	379, 463, 477
TaiI	ACGT	1 cut(s)	75
TasI	AATT	2 cut(s)	36, 498
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	4 cut(s)	239, 288, 303, 497
Tru9I	TTAA	4 cut(s)	239, 288, 303, 497
TscAI	CASTG	1 cut(s)	480
TseI	GCWGC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	17, 104, 506
TspRI	CASTG	1 cut(s)	480
Tth111I	GACNNNGTC	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	238
VspI	ATTAAT	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	2 cut(s)	144, 501
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.