Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Forward (+)

15191238 .. 15193736

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1049100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGAAACCCTCCATTGCAATGAGCTTCGCTTCCGAAGCAAAAATTGCAGACGACATTCCTGGGGAAGATGTAATCAGAGTTCTGAAATTTCTCCGAGGAGTTGGAATCTCGGACCCTGTCCCAGATGAGTTCGATGCTAAAAAGGATACCTACTCCGACATCATTCGTGACCTCCTCAAGCCCCTTCACATCTCCCCAGGCCGTGTCACCTGCCTCGTATCTGTGAAGCCTGCTGTCACTAATTTCTATTCCGGATTTCATGGAGGAGCTATTGCTGCTGTTGCTGAGGCTGTGTCCATGGCTTGTGCAAGAACTCTCGTGGCTAAGGATAAGGAGCTTTTTCTGGGGGAACTAAGCATTTCTTACCTCTCTAGTGCAACAAAGAATGAAGAGGTGATAGTTGACGCATCTGTTGTGCGGAGTGGAAGAAACCTCTGCGTGATAGCTCTTGAATGGAAACTCAAGAAAACTGGGCGTTTGGTTTACACTGCTCGTGCTACCTTCTACCACACGCCTGTTGCAAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

178

Amino Acids

19.14

Weight (kDa)

8.73

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4442	PF14539	64 - 128	1.9e-06	Domain of unknown function (DUF4442)
4HBT_3	PF13622	86 - 169	1.1e-06	Acyl-CoA thioesterase N-terminal domain
4HBT	PF03061	88 - 154	8.2e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	254
AciI	CCGC	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	455
AjnI	CCWGG	2 cut(s)	61, 199
AluBI	AGCT	4 cut(s)	27, 272, 340, 449
AluI	AGCT	4 cut(s)	27, 272, 340, 449
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	202, 409
AvaII	GGWCC	1 cut(s)	115
BauI	CACGAG	2 cut(s)	320, 495
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	2 cut(s)	63, 201
BciVI	GTATCC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	2 cut(s)	63, 201
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	63, 201
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	127, 419
BmuI	ACTGGG	1 cut(s)	483
Bpu10I	CCTNAGC	2 cut(s)	288, 327
BpuEI	CTTGAG	2 cut(s)	164, 449
BsaJI	CCNNGG	4 cut(s)	62, 97, 199, 300
BsaWI	WCCGGW	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	2 cut(s)	15, 27
BseAI	TCCGGA	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	63, 201
BseDI	CCNNGG	4 cut(s)	62, 97, 199, 300
BseMI	GCAATG	2 cut(s)	15, 27
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	3 cut(s)	114, 167, 282
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	254
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	280
BspEI	TCCGGA	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	15, 27
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	4 cut(s)	62, 97, 199, 300
BssSI	CACGAG	2 cut(s)	320, 495
BssT1I	CCWWGG	1 cut(s)	300
Bst2BI	CACGAG	2 cut(s)	320, 495
Bst2UI	CCWGG	2 cut(s)	63, 201
Bst6I	CTCTTC	1 cut(s)	387
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	288, 327, 356
BstDSI	CCRYGG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 278, 284
BstNI	CCWGG	2 cut(s)	63, 201
BstSCI	CCNGG	2 cut(s)	61, 199
BstV1I	GCAGC	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	416
CviAII	CATG	2 cut(s)	263, 301
DdeI	CTNAG	3 cut(s)	288, 327, 356
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	61, 199
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	266, 304
FaiI	YATR	3 cut(s)	264, 302, 532
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	2 cut(s)	262, 300
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	266, 304
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	2 cut(s)	202, 409
Hpy166II	GTNNAC	2 cut(s)	406, 487
Hpy188I	TCNGA	6 cut(s)	37, 80, 87, 98, 115, 160
Hpy188III	TCNNGA	4 cut(s)	170, 255, 452, 466
Hpy8I	GTNNAC	2 cut(s)	406, 487
HpyAV	CCTTC	2 cut(s)	197, 514
HpyCH4V	TGCA	5 cut(s)	20, 50, 311, 380, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 278, 284
HpyF3I	CTNAG	3 cut(s)	288, 327, 356
Hsp92II	CATG	2 cut(s)	266, 304
Kpn2I	TCCGGA	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	269, 337
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	127, 419
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	170, 208, 238
MboII	GAAGA	3 cut(s)	80, 404, 441
MluCI	AATT	4 cut(s)	45, 89, 244, 527
MmeI	TCCRAC	2 cut(s)	85, 183
MroI	TCCGGA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	63, 201
MvaI	CCWGG	2 cut(s)	63, 201
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 278, 284
NcoI	CCATGG	1 cut(s)	300
NlaIII	CATG	2 cut(s)	266, 304
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	3 cut(s)	170, 208, 238
PaqCI	CACCTGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	108
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	61, 199
PspGI	CCWGG	2 cut(s)	61, 199
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	115
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
PsyI	GACNNNGTC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	63, 201
SfaNI	GCATC	2 cut(s)	127, 419
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	179, 464
SmoI	CTYRAG	2 cut(s)	179, 464
Sse9I	AATT	4 cut(s)	45, 89, 244, 527
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	61, 199
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	1 cut(s)	135
TasI	AATT	4 cut(s)	45, 89, 244, 527
TfiI	GAWTC	1 cut(s)	108
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	3 cut(s)	170, 208, 238
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	3 cut(s)	170, 208, 238
TspDTI	ATGAA	2 cut(s)	251, 405
TspRI	CASTG	1 cut(s)	496
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	89
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.