Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000825.1

Orthogroup ID

OG0002384

Physical Location & Seq

Genomic Coordinates Reverse (-)

55392 .. 58051

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000825.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaatctgcagaacttttttggtagattccatggaggagctatagcttctgttgctgaggttgagttggtagctactgcaagaacggttgtggttgaggataatgagctttttctaggggaactaagcatcttttacctctcttctgctccaaagaatgggcgggatgtgtatgtcatggtgagcttcttgatgggaattctggaagtttacttggtattgaaaccctaccaatcgcttctaatttgggtcactctggcgatccttgtcggcccattcgctcctccttctgtcaccggcggtgacataagggtcggtcactgcccaatagtcgacttccctgaggtttcaggtgaggtggacgatgaatcgaagaaaagggtatcgcagaagaggaaaaagtcagtggactcggcgctggcggtcggaacgggtaatgggtacgaaagttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

151

Amino Acids

16.44

Weight (kDa)

5.14

Isoelectric Point (pI)

24.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61200
fragaria_vesca	FvH4_7g13460 FvH4_7g13460 FvH4_7g13461
malus_domestica	MD01G1049100.v1.1 MD07G1126000.v1.1
prunus_persica	Prupe.2G157800_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1 Prupe.2G158100_v2.0.a1
pyrus_communis	pycom01g07430 pycom07g12050
rosa_chinensis	RchiOBHm_Chr1g0352831 RchiOBHm_Chr1g0352841 RchiOBHm_Chr5g0032131
rosa_laevigata	RLG00000028312 RLG00000028313
rosa_multiflora	Rmu_sc0000825.1_g000012 Rmu_sc0006445.1_g000014 Rmu_sc0006445.1_g000018 Rmu_sc0006445.1_g000019
rosa_roxburghii	Rroxscaffold_1G00026950 Rroxscaffold_4G00302290
rosa_rugosa	Rorug01G0231700 Rorug01G0231800
rosa_samantha	Rh1AG245000 Rh1AG245100 Rh1BG215700 Rh1CG077200 Rh1CG228800 Rh1CG228900 Rh1DG083700 Rh1DG241700 Rh1DG241800 Rh2AG359500 Rh3DG320000 Rh4DG118300 Rh5DG247100
rosa_wichuraiana	Rw0G013440 Rw1G013190 Rw5G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	3 cut(s)	163, 300, 422
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	5 cut(s)	41, 47, 74, 109, 186
AluI	AGCT	5 cut(s)	41, 47, 74, 109, 186
AlwI	GGATC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	4 cut(s)	193, 286, 314, 365
AxyI	CCTNAGG	1 cut(s)	342
BaeI	ACNNNNGTAYC	1 cut(s)	433
BbvCI	CCTCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	8, 42
BfoI	RGCGCY	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	272
BmsI	GCATC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	48, 333
BseRI	GAGGAG	2 cut(s)	51, 273
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	158
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	3 cut(s)	163, 300, 422
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	2 cut(s)	49, 334
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	148, 386
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	3 cut(s)	57, 125, 342
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	8, 42
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	319, 411
Cac8I	GCNNGC	1 cut(s)	420
CfoI	GCGC	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	2 cut(s)	32, 178
CviJI	RGCY	6 cut(s)	41, 47, 74, 109, 186, 273
CviKI_1	RGCY	6 cut(s)	41, 47, 74, 109, 186, 273
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	57, 125, 342
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	148, 386
EarI	CTCTTC	2 cut(s)	148, 386
Eco130I	CCWWGG	1 cut(s)	31
Eco81I	CCTNAGG	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	35, 181
FaiI	YATR	5 cut(s)	33, 44, 174, 179, 308
FatI	CATG	2 cut(s)	31, 177
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	1 cut(s)	179
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	35, 181
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	4, 27, 368, 410
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	4 cut(s)	193, 286, 314, 365
Hpy166II	GTNNAC	4 cut(s)	211, 334, 361, 409
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	2 cut(s)	190, 203
Hpy8I	GTNNAC	4 cut(s)	211, 334, 361, 409
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	10, 80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	57, 125, 342
Hsp92II	CATG	2 cut(s)	35, 181
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	3 cut(s)	38, 154, 286
LpnPI	CCDG	6 cut(s)	188, 242, 310, 336, 354, 404
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	4 cut(s)	250, 292, 302, 317
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	3 cut(s)	135, 385, 403
MluCI	AATT	2 cut(s)	198, 243
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	8 cut(s)	29, 52, 91, 149, 294, 337, 349, 387
MspI	CCGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	2 cut(s)	35, 181
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	4 cut(s)	250, 292, 302, 317
PfeI	GAWTC	3 cut(s)	4, 27, 368
PflMI	CCANNNNNTGG	1 cut(s)	158
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SalI	GTCGAC	1 cut(s)	332
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	404
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	2 cut(s)	8, 42
SgrAI	CRCCGGYG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	198, 243
SsiI	CCGC	3 cut(s)	163, 300, 422
SspMI	CTAG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	333, 371
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	2 cut(s)	198, 243
TfiI	GAWTC	3 cut(s)	4, 27, 368
TscAI	CASTG	2 cut(s)	326, 411
TseFI	GTSAC	4 cut(s)	250, 292, 302, 317
Tsp45I	GTSAC	4 cut(s)	250, 292, 302, 317
TspDTI	ATGAA	2 cut(s)	17, 381
TspRI	CASTG	2 cut(s)	326, 411
Van91I	CCANNNNNTGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.