Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Forward (+)

45745052 .. 45748365

Gene Structure 3314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG241600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGGCGCCAACACCGTGTAAACATTTCGGTACATTATCCAAAACAGTTTTCAGTCTCAGCTGAAAGCTCAACAGAGCAAATGGCTTCGCCTTTGCCTTCTTCCCTCTCTCACTTCTCACTCCTCTCCAAACCCGCACCGCCCCAAAACCACCACCACCGCCTCCTCCTAGACCCGACCCGACCCGCGTCTTCCGGGTTCCAATGCCGGGCCGGAACCGGGTTCTTCAACCGTCTCGGACGCCTCATAAAGGAGAAGGCCAAGAGCGACGTGGATAAGCTCTTCTCCGGGTTCTCCAAGACCCGCGACAATCTCGCCGTCATCGACGAGCTCCTCCTCTACTGGAACCTCGCCGACACCGATCGCGTCCTCGACGAGCTTGAAGAGGCTCTGCTGGTATCGGATTTTGGGCCCAAGATCACCATTAAGATTGTGGAGAGTTTGAGGGAGGATATAGTAGCTGGCAAGCTCAAGTCTGGAAGTGAAATAAAGGAAGCGTTGAAGAAGAATGTGCTGGATTTGTTGACTATAGAAGGGAAAACTGAGCTTCAACTTGGATACAGGAAACCAGCTGTGGTTATAATTGTTGGGGTTAATGGAGGTGGGAAGACAACGTCTCTCGGAAAGCTGGCTTATAGATTAAAGAATGAAGGGGCAAAGGTATTGATGGCAGCAGGGGATACGTTTCGAGCTGCTGCCGGTGACCAGCTGGAGATATGGGCTGAGAGGACTGGCTGTGAGATAGTTGTGGCTGAAAAAGAGAAGGCCAAAGCAGCAACAGTTATTTCTCAGGCTGTGAAGAGGGGGAAGGAACAAGGTTATGACATTGTCTTATGTGACACCTCTGGACGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGCAAGAAAGCTGTAGGCAAAGTCATGCCTGGTGCCCCTAATTATGCTATGTTTTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

317

Amino Acids

34.78

Weight (kDa)

9.25

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54_N	PF02881	120 - 169	1.2e-09	SRP54-type protein, helical bundle domain
SRP54	PF00448	190 - 302	7.5e-38	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AatII	GACGTC	1 cut(s)	853
AccB1I	GGYRCC	2 cut(s)	6, 923
AccII	CGCG	3 cut(s)	188, 306, 366
AciI	CCGC	5 cut(s)	135, 140, 160, 186, 304
AcyI	GRCGYC	3 cut(s)	7, 241, 850
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	3 cut(s)	208, 219, 250
AgsI	TTSAA	5 cut(s)	229, 383, 502, 551, 949
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	919
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	3 cut(s)	61, 239, 621
AoxI	GGCC	4 cut(s)	210, 258, 410, 765
ApaI	GGGCCC	1 cut(s)	414
ApeKI	GCWGC	4 cut(s)	671, 692, 695, 773
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	210, 410, 411
AsuC2I	CCSGG	4 cut(s)	196, 209, 220, 289
AsuHPI	GGTGA	2 cut(s)	412, 713
BaeGI	GKGCMC	2 cut(s)	414, 928
BanI	GGYRCC	2 cut(s)	6, 923
BanII	GRGCYC	2 cut(s)	333, 414
BbsI	GAAGAC	2 cut(s)	183, 614
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	4 cut(s)	679, 682, 683, 785
BccI	CCATC	2 cut(s)	661, 868
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	921
BciVI	GTATCC	2 cut(s)	551, 673
BcnI	CCSGG	4 cut(s)	196, 209, 220, 289
BcoDI	GTCTC	3 cut(s)	61, 239, 621
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	528, 903
BfoI	RGCGCY	1 cut(s)	10
BfuI	GTATCC	2 cut(s)	551, 673
BisI	GCNGC	4 cut(s)	672, 693, 696, 774
BlsI	GCNGC	4 cut(s)	673, 694, 697, 775
Bme1390I	CCNGG	5 cut(s)	196, 209, 220, 289, 921
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	210, 410, 411
BmiI	GGNNCC	6 cut(s)	8, 200, 217, 347, 412, 925
BmrFI	CCNGG	5 cut(s)	196, 209, 220, 289, 921
BoxI	GACNNNNGTC	1 cut(s)	187
BpiI	GAAGAC	2 cut(s)	183, 614
BpmI	CTGGAG	1 cut(s)	731
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	4 cut(s)	196, 209, 220, 289
BsaHI	GRCGYC	3 cut(s)	7, 241, 850
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 219, 250
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	347, 736
BseBI	CCWGG	1 cut(s)	921
BseLI	CCNNNNNNNGG	3 cut(s)	208, 219, 250
BseMII	CTCAG	4 cut(s)	72, 534, 714, 803
BseNI	ACTGG	2 cut(s)	347, 736
BseRI	GAGGAG	4 cut(s)	113, 155, 323, 326
BseSI	GKGCMC	2 cut(s)	414, 928
BseXI	GCAGC	4 cut(s)	679, 682, 683, 785
BsgI	GTGCAG	1 cut(s)	839
Bsh1236I	CGCG	3 cut(s)	188, 306, 366
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	212, 260, 412, 767
BshNI	GGYRCC	2 cut(s)	6, 923
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	6 cut(s)	195, 208, 213, 219, 288, 699
BslI	CCNNNNNNNGG	3 cut(s)	208, 219, 250
BsmAI	GTCTC	3 cut(s)	61, 239, 621
BsmBI	CGTCTC	2 cut(s)	239, 621
BsnI	GGCC	4 cut(s)	212, 260, 412, 767
Bsp120I	GGGCCC	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	333, 414, 928
Bsp143I	GATC	2 cut(s)	361, 417
BspACI	CCGC	5 cut(s)	135, 140, 160, 186, 304
BspANI	GGCC	4 cut(s)	212, 260, 412, 767
BspCNI	CTCAG	4 cut(s)	71, 535, 715, 802
BspFNI	CGCG	3 cut(s)	188, 306, 366
BspLI	GGNNCC	6 cut(s)	8, 200, 217, 347, 412, 925
BspQI	GCTCTTC	1 cut(s)	287
BspT107I	GGYRCC	2 cut(s)	6, 923
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	347, 736
BssAI	RCCGGY	1 cut(s)	698
BssMI	GATC	2 cut(s)	361, 417
BssNI	GRCGYC	3 cut(s)	7, 241, 850
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	4 cut(s)	17, 48, 233, 781
Bst6I	CTCTTC	4 cut(s)	287, 378, 794, 873
BstACI	GRCGYC	3 cut(s)	7, 241, 850
BstC8I	GCNNGC	4 cut(s)	463, 467, 630, 892
BstDEI	CTNAG	4 cut(s)	58, 543, 723, 789
BstEII	GGTNACC	1 cut(s)	701
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstFNI	CGCG	3 cut(s)	188, 306, 366
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	364, 420
BstMAI	GTCTC	3 cut(s)	61, 239, 621
BstMBI	GATC	2 cut(s)	361, 417
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	773
BstNI	CCWGG	1 cut(s)	921
BstNSI	RCATGY	1 cut(s)	894
BstPAI	GACNNNNGTC	1 cut(s)	187
BstPI	GGTNACC	1 cut(s)	701
BstSCI	CCNGG	5 cut(s)	194, 207, 218, 287, 919
BstSFI	CTRYAG	2 cut(s)	528, 903
BstSLI	GKGCMC	2 cut(s)	414, 928
BstUI	CGCG	3 cut(s)	188, 306, 366
BstV1I	GCAGC	4 cut(s)	679, 682, 683, 785
BstV2I	GAAGAC	2 cut(s)	183, 614
BsuI	GTATCC	2 cut(s)	551, 673
BsuRI	GGCC	4 cut(s)	212, 260, 412, 767
BtrI	CACGTC	1 cut(s)	271
Cac8I	GCNNGC	4 cut(s)	463, 467, 630, 892
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	3 cut(s)	210, 410, 411
CseI	GACGC	3 cut(s)	177, 249, 355
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	2 cut(s)	891, 916
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	4 cut(s)	58, 543, 723, 789
DinI	GGCGCC	1 cut(s)	8
DpnI	GATC	2 cut(s)	363, 419
DpnII	GATC	2 cut(s)	361, 417
Eam1104I	CTCTTC	4 cut(s)	287, 378, 794, 873
EarI	CTCTTC	4 cut(s)	287, 378, 794, 873
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	333, 414
Eco53kI	GAGCTC	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	919
EcoT38I	GRGCYC	2 cut(s)	333, 414
EgeI	GGCGCC	1 cut(s)	8
EheI	GGCGCC	1 cut(s)	8
Esp3I	CGTCTC	2 cut(s)	239, 621
FaeI	CATG	2 cut(s)	894, 919
FatI	CATG	2 cut(s)	890, 915
FauI	CCCGC	3 cut(s)	142, 193, 311
Fnu4HI	GCNGC	4 cut(s)	672, 693, 696, 774
FriOI	GRGCYC	2 cut(s)	333, 414
Fsp4HI	GCNGC	4 cut(s)	672, 693, 696, 774
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	4 cut(s)	672, 693, 696, 774
GsuI	CTGGAG	1 cut(s)	731
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	4 cut(s)	212, 260, 412, 767
HapII	CCGG	6 cut(s)	195, 208, 213, 219, 288, 699
HgaI	GACGC	3 cut(s)	177, 249, 355
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	3 cut(s)	7, 241, 850
Hin1II	CATG	2 cut(s)	894, 919
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HpaII	CCGG	6 cut(s)	195, 208, 213, 219, 288, 699
HphI	GGTGA	2 cut(s)	412, 713
Hpy166II	GTNNAC	2 cut(s)	22, 525
Hpy188I	TCNGA	3 cut(s)	239, 403, 623
Hpy188III	TCNNGA	2 cut(s)	477, 846
Hpy8I	GTNNAC	2 cut(s)	22, 525
Hpy99I	CGWCG	3 cut(s)	272, 329, 377
HpyAV	CCTTC	6 cut(s)	108, 250, 527, 644, 757, 802
HpyCH4III	ACNGT	4 cut(s)	17, 48, 233, 781
HpyCH4IV	ACGT	4 cut(s)	270, 614, 683, 850
HpyCH4V	TGCA	3 cut(s)	856, 890, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	773
HpyF3I	CTNAG	4 cut(s)	58, 543, 723, 789
HpySE526I	ACGT	4 cut(s)	270, 614, 683, 850
Hsp92I	GRCGYC	3 cut(s)	7, 241, 850
Hsp92II	CATG	2 cut(s)	894, 919
HspAI	GCGC	1 cut(s)	7
KasI	GGCGCC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	361, 417
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	4 cut(s)	679, 682, 683, 785
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	4 cut(s)	270, 614, 683, 850
MaeIII	GTNAC	2 cut(s)	701, 836
MalI	GATC	2 cut(s)	363, 419
MboI	GATC	2 cut(s)	361, 417
MhlI	GDGCHC	3 cut(s)	333, 414, 928
MluCI	AATT	3 cut(s)	582, 862, 931
Mly113I	GGCGCC	1 cut(s)	7
MseI	TTAA	3 cut(s)	426, 594, 641
MspA1I	CMGCKG	3 cut(s)	62, 572, 709
MspI	CCGG	6 cut(s)	195, 208, 213, 219, 288, 699
MspR9I	CCNGG	5 cut(s)	196, 209, 220, 289, 921
MvaI	CCWGG	1 cut(s)	921
MvnI	CGCG	3 cut(s)	188, 306, 366
MwoI	GCNNNNNNNGC	1 cut(s)	773
NarI	GGCGCC	1 cut(s)	7
NciI	CCSGG	4 cut(s)	196, 209, 220, 289
NdeII	GATC	2 cut(s)	361, 417
NlaIII	CATG	2 cut(s)	894, 919
NlaIV	GGNNCC	6 cut(s)	8, 200, 217, 347, 412, 925
NmuCI	GTSAC	2 cut(s)	701, 836
NspI	RCATGY	1 cut(s)	894
PaeI	GCATGC	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 357
PflFI	GACNNNGTC	2 cut(s)	613, 827
PkrI	GCNGC	4 cut(s)	673, 694, 697, 775
Ple19I	CGATCG	1 cut(s)	364
PluTI	GGCGCC	1 cut(s)	10
PshAI	GACNNNNGTC	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	919
PspEI	GGTNACC	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	919
PspN4I	GGNNCC	6 cut(s)	8, 200, 217, 347, 412, 925
PspOMI	GGGCCC	1 cut(s)	410
PspPI	GGNCC	3 cut(s)	210, 410, 411
PsyI	GACNNNGTC	2 cut(s)	613, 827
PvuI	CGATCG	1 cut(s)	364
PvuII	CAGCTG	3 cut(s)	62, 572, 709
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	426, 594, 641
SatI	GCNGC	4 cut(s)	672, 693, 696, 774
Sau3AI	GATC	2 cut(s)	361, 417
Sau96I	GGNCC	3 cut(s)	210, 410, 411
ScrFI	CCNGG	5 cut(s)	196, 209, 220, 289, 921
SduI	GDGCHC	3 cut(s)	333, 414, 928
SfcI	CTRYAG	2 cut(s)	528, 903
SfoI	GGCGCC	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	894
Sse9I	AATT	3 cut(s)	582, 862, 931
SsiI	CCGC	5 cut(s)	135, 140, 160, 186, 304
SspDI	GGCGCC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	5 cut(s)	194, 207, 218, 287, 919
TaaI	ACNGT	4 cut(s)	17, 48, 233, 781
TaiI	ACGT	4 cut(s)	273, 617, 686, 853
TaqI	TCGA	3 cut(s)	324, 372, 688
TasI	AATT	3 cut(s)	582, 862, 931
Tru1I	TTAA	3 cut(s)	426, 594, 641
Tru9I	TTAA	3 cut(s)	426, 594, 641
TseFI	GTSAC	2 cut(s)	701, 836
TseI	GCWGC	4 cut(s)	671, 692, 695, 773
Tsp45I	GTSAC	2 cut(s)	701, 836
TspDTI	ATGAA	1 cut(s)	663
Tth111I	GACNNNGTC	2 cut(s)	613, 827
XagI	CCTNNNNNAGG	1 cut(s)	248
XceI	RCATGY	1 cut(s)	894
XcmI	CCANNNNNNNNNTGG	2 cut(s)	268, 430
XspI	CTAG	1 cut(s)	170
ZraI	GACGTC	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.