Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Reverse (-)

13383096 .. 13384976

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12060.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGTCGCCTTTGCCGTCCTCTCACCCTCCTCGTCTCTCACTCCTCTCCAAAACTTCACCGCCTCAGTACCACCGCCTTCTCCTTTCCCCGAGCCGACCCGACCATTTCCGGTTCGAATGCCGGGCGGGGCAGACCGGGTTCTTCACCCGGCTCGGCAGGCTTATCAAGGAGAAGGCCAACAGCGACGTGGAGAACTCTTGCTCTACTGGTACCTCGCCGACACCGATCGAGTCCTCGACGAACTCGAAGAGGTTTCAGGCTCTGCTGGTATCCGATTTCGGGCTGAAAATCACGATTAAGATTGTGGAGAGTTTGAGGGAGGATATAGTTGCTGGGAAGCTGAAATCTGGAAGTGAACTTAAGGATGTGTTGAAGAAGAGTGTGCTCGATTTGTTAACTATTAAAGGGAAAACCGAACTTCAACTCGGATACAGGAAACCGGCTGTGGTTATGATTGTTGGCGTTAATGGACGCGGGAAAACATCTCTTGGAAAGCTCGCTTATAGATTGAAGAATGGAGGGGCAAAGGTATTAATGGCTGCAGGGGATACCTTTCGAGCAGCTGCATGTGACCAGCTGGAGATATGGGCCGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAGAGAGAGAAGGCCAAAGCAGCATCAGGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGCAAGAAAGCTGTGACCAAAGTCATGCCTGGTGCTCCTAATGTAAGCTCAGCCGTTGGACACTTTTATCATCTTTCTATAATTCAGTTTGAAAATCTAGGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

267

Amino Acids

28.9

Weight (kDa)

9.66

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	212
AccII	CGCG	1 cut(s)	477
AciI	CCGC	4 cut(s)	62, 76, 128, 477
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	71, 214
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	376, 425, 514, 785
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	7 cut(s)	343, 499, 566, 580, 672, 704, 741
AluI	AGCT	7 cut(s)	343, 499, 566, 580, 672, 704, 741
Alw21I	GWGCWC	2 cut(s)	390, 730
Alw26I	GTCTC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	3 cut(s)	177, 591, 636
ApeKI	GCWGC	4 cut(s)	542, 563, 566, 644
AseI	ATTAAT	1 cut(s)	536
Asp718I	GGTACC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	591
AsuC2I	CCSGG	3 cut(s)	125, 139, 151
AsuHPI	GGTGA	3 cut(s)	17, 51, 139
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	390, 730
BbvI	GCAGC	4 cut(s)	529, 553, 575, 656
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	1 cut(s)	723
BciVI	GTATCC	3 cut(s)	283, 425, 544
BcnI	CCSGG	3 cut(s)	125, 139, 151
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	362
BfuI	GTATCC	3 cut(s)	283, 425, 544
BisI	GCNGC	4 cut(s)	543, 564, 567, 645
BlpI	GCTNAGC	1 cut(s)	742
BlsI	GCNGC	4 cut(s)	544, 565, 568, 646
Bme1390I	CCNGG	4 cut(s)	125, 139, 151, 723
BmeT110I	CYCGRG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	4 cut(s)	125, 139, 151, 723
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	612
BoxI	GACNNNNGTC	1 cut(s)	713
BpmI	CTGGAG	1 cut(s)	602
Bpu1102I	GCTNAGC	1 cut(s)	742
Bpu14I	TTCGAA	1 cut(s)	117
BpuMI	CCSGG	3 cut(s)	125, 139, 151
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	2 cut(s)	214, 607
BseBI	CCWGG	1 cut(s)	723
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	80, 615, 756
BseNI	ACTGG	2 cut(s)	214, 607
BseRI	GAGGAG	2 cut(s)	21, 35
BseXI	GCAGC	4 cut(s)	529, 553, 575, 656
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	179, 593, 638
BshNI	GGYRCC	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	390, 730
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	5 cut(s)	112, 124, 138, 151, 443
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	179, 593, 638
BsoBI	CYCGRG	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	390, 730
Bsp143I	GATC	1 cut(s)	228
Bsp1720I	GCTNAGC	1 cut(s)	742
BspACI	CCGC	4 cut(s)	62, 76, 128, 477
BspANI	GGCC	3 cut(s)	179, 593, 638
BspCNI	CTCAG	3 cut(s)	79, 616, 755
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	547
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	212
BspTI	CTTAAG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	214, 607
BssAI	RCCGGY	1 cut(s)	442
BssMI	GATC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	723
Bst6I	CTCTTC	3 cut(s)	245, 374, 675
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	161, 501, 694
BstDEI	CTNAG	3 cut(s)	66, 624, 742
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	477
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	228
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 644
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	3 cut(s)	573, 696, 799
BstPAI	GACNNNNGTC	1 cut(s)	713
BstSCI	CCNGG	4 cut(s)	123, 137, 149, 721
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	529, 553, 575, 656
BsuI	GTATCC	3 cut(s)	283, 425, 544
BsuRI	GGCC	3 cut(s)	179, 593, 638
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	161, 501, 694
CaiI	CAGNNNCTG	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	591
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	70, 213
CviAII	CATG	4 cut(s)	570, 693, 718, 796
CviQI	GTAC	2 cut(s)	70, 213
DdeI	CTNAG	3 cut(s)	66, 624, 742
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	3 cut(s)	245, 374, 675
EarI	CTCTTC	3 cut(s)	245, 374, 675
Eco88I	CYCGRG	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	721
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	4 cut(s)	573, 696, 721, 799
FaiI	YATR	9 cut(s)	329, 455, 507, 571, 589, 694, 719, 773, 797
FatI	CATG	4 cut(s)	569, 692, 717, 795
FauI	CCCGC	2 cut(s)	121, 470
Fnu4HI	GCNGC	4 cut(s)	543, 564, 567, 645
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	543, 564, 567, 645
FspBI	CTAG	1 cut(s)	791
GluI	GCNGC	4 cut(s)	543, 564, 567, 645
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	179, 593, 638
HapII	CCGG	5 cut(s)	112, 124, 138, 151, 443
HgaI	GACGC	1 cut(s)	483
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	573, 696, 721, 799
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	1 cut(s)	233
HpaI	GTTAAC	1 cut(s)	399
HpaII	CCGG	5 cut(s)	112, 124, 138, 151, 443
HphI	GGTGA	3 cut(s)	17, 51, 139
Hpy166II	GTNNAC	2 cut(s)	359, 399
Hpy188I	TCNGA	2 cut(s)	277, 431
Hpy188III	TCNNGA	2 cut(s)	295, 351
Hpy8I	GTNNAC	2 cut(s)	359, 399
Hpy99I	CGWCG	3 cut(s)	10, 191, 244
HpyAV	CCTTC	3 cut(s)	89, 169, 628
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	5 cut(s)	545, 569, 658, 692, 696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 644
HpyF3I	CTNAG	3 cut(s)	66, 624, 742
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	573, 696, 721, 799
KpnI	GGTACC	1 cut(s)	216
KspAI	GTTAAC	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	4 cut(s)	529, 553, 575, 656
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	572, 706
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	6 cut(s)	136, 262, 388, 391, 526, 692
MhlI	GDGCHC	2 cut(s)	390, 730
MluCI	AATT	2 cut(s)	664, 774
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	730
MseI	TTAA	6 cut(s)	300, 363, 398, 405, 468, 536
MspA1I	CMGCKG	2 cut(s)	566, 580
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	5 cut(s)	112, 124, 138, 151, 443
MspR9I	CCNGG	4 cut(s)	125, 139, 151, 723
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	723
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	160, 644
NciI	CCSGG	3 cut(s)	125, 139, 151
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	4 cut(s)	573, 696, 721, 799
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	2 cut(s)	135, 619
NmuCI	GTSAC	2 cut(s)	572, 706
NspI	RCATGY	3 cut(s)	573, 696, 799
NspV	TTCGAA	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	3 cut(s)	14, 224, 245
PctI	GAATGC	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	544, 565, 568, 646
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PshAI	GACNNNNGTC	1 cut(s)	713
PshBI	ATTAAT	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	721
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	591
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	265
PvuI	CGATCG	1 cut(s)	231
PvuII	CAGCTG	2 cut(s)	566, 580
RsaI	GTAC	2 cut(s)	71, 214
RsaNI	GTAC	2 cut(s)	70, 213
SaqAI	TTAA	6 cut(s)	300, 363, 398, 405, 468, 536
SatI	GCNGC	4 cut(s)	543, 564, 567, 645
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	591
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	4 cut(s)	125, 139, 151, 723
SduI	GDGCHC	2 cut(s)	390, 730
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	2 cut(s)	664, 774
SsiI	CCGC	4 cut(s)	62, 76, 128, 477
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	4 cut(s)	123, 137, 149, 721
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	6 cut(s)	117, 231, 239, 248, 390, 559
TasI	AATT	2 cut(s)	664, 774
Tru1I	TTAA	6 cut(s)	300, 363, 398, 405, 468, 536
Tru9I	TTAA	6 cut(s)	300, 363, 398, 405, 468, 536
TseFI	GTSAC	2 cut(s)	572, 706
TseI	GCWGC	4 cut(s)	542, 563, 566, 644
Tsp45I	GTSAC	2 cut(s)	572, 706
Vha464I	CTTAAG	1 cut(s)	362
VspI	ATTAAT	1 cut(s)	536
XceI	RCATGY	3 cut(s)	573, 696, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.