AT2G47410

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003305
Physical Location & Seq
Forward (+)
19448139 .. 19457303
9165 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47410.2

Sequence Viewer

Length: 4563 bp
ATGGACTGGATACACAAATCTACTCCTTTTATGGAACCTTCGAATTTGGCAAAACTGGTTCAAGGAAATGTTCCTCTTCAGCCACATGACAGCCATTCTTCGCTAACTGATCTAGATATGGACCTTAGAGAAGTCTATTTCCTGATTTTACATTTTCTTTCTATTGGCCCCTGCGAACGAACCTTTGGCCACTTGAGAGACGAAATTTTGGAAAAAGGGCTTTTACCCCGTAGATATCATTCCTGGTGGTCAAGAAGTGGCATTTATAGCGGGCGTGCTGATGATGATGGCATCTCCCTCCCCTTGAGTTATGATAATTTGATAGAGAGGTATCCTCATATCGAAAAGGATCACTTGGTGAAGCTTCTCAAACAACTAATTTTAAACCCGTCTTTCCCTTCACACATGAGAGTTGAAGGAAATGCTCCTAATGCTGCTGATGTTCCAACACTATTGGGATCTGGCACCTTTTCACTTGTGGATCGTAGTAACAATATAGAGTCTCAGAAAGCTAGGCATGTTGCGTCATACTTACGCTGGCCGCATATGCATGCCGATCAAGTGCGTGGCCTAAGTCTCAGAGAAATTGGAGGAGGTTTCAGGAAACACCACCGTGCTCCGTCCATTCTTTCAGCATGTCATGCTATTGCAAAACCATCAACAATGGTTCAAAAGATGCAAAATATAAAGAAGCTCAGAGGACATCGTAATGCTGTCTACTGCGCTATATTTGATCGTTCTGGAAGATATGTTATCACTGGCTCCGATGACCGGCTTGTCAAAATTTGGTCAATGGAAACTGCGCTTTGCTTGGCTAGCTGCCGTGGGCATGAAGGTGACATTACAGACTTGGCCGTTAGTTCAAACAATGCTTTGGTTGCTTCAGCTTCAAACGATTTTGTGATTCGAGTGTGGCGGTTGCCTGATGGAATGCCAATTTCTGTATTGCGGGGACACACTGGAGCTGTTACCGCAATTGCATTCAGTCCCAGACAGGCGTCTGTTTACCAACTTTTATCGTCATCAGATGATGGAACCTGTCGTATCTGGGATGCTAGGTATTCTCAGTGGCTCCCACGAATCTATGTTCCAAGTCCTTCAGATGCTAACACTGGATCCACGAGCAATGCATCTCAGAGTCATCAAATATTATGTTGTGCATACAATGCTAATGGAACCATTTTCGTCACGGGTAGCTCTGACAGCAATGCAAGGGTTTGGAGTGCCTCAAAACCTAACTTGGATGATGCTGAACAGCCGACTCATGAGCTGGATGTTCTACGGGGCCATGAGAATGATGTCAACTATGTGCAATTTAGTGGTTGTGCTGTGGCTCCAAAATCTTCAACAGCTGATGCTCTGAAGGAAGATAGCTACCCAAAGTTTAAGAATTCCTGGTTTTGTCATGACAATATAGTAACCTGCTCTCGCGATGGTAGTGCAATTATATGGACTCCAAGATCACGTAAATTCCATGGGAAATCTGGACGCTGGATGAAAGGATATCATCTGAAGGTTCCACCTCCTCCACTTCCTCCACAACCTCCTCGAGGAGGCCCACGTCAAAGGTTTCTTCCAACACCACGGGGTGTTAATATGATTATATGGAGCTTGGATAATCGTTTTGTACTTGCCGCTATCATGGATTGCAGGATTTGTGTTTGGAATGCTGCTGATGGTAGCTTAGTGCATTGTTTAACTGGTCACAGTGAATCGTCTTATGTCTTGGATGTCCATCCTTTCAATCCTCGGATTGCTATGAGCGCTGGCTATGATGGGAAAACAATCATCTGGGATATATGGGAGGGTATACCAATCAAAGTGTACGAAATCGGGAGATTTAAGTTGGTTGATGGAAAGTTTTCACAAGATGGGACATCTATTGTGCTTTCAGATGATGTTGGCCAGATATATTTTCTAAACACAGGACAAGGAGAGTCTCAAAAGAATGCAAAATACGACCAGTTCTTCCTTGGTGATTATCGTCCTCTTATTCGAGATACCAATGGACATGTTCTTGATCAGGAGACGCAGCTACTTCCTCATCGGAGGAACCTTCAGGATCTTCTTTGTGATTCAAGTATGATTCCGTATCCAGAACCTGACCAGACAATGTTTCAGCAACGCAGACTTGGTGCATTAGGAGTTGAATGGCGTCCTTCCTCGATAAAGTTTTCTGTTGGCCCTGATTTTAGTTTAGGTCAAGATTATATAATGCCTCCTTTGGCTGATCTGGATAGACTGATTGAGCCATTGCCTGAGTTTATAGATGCTATGTACTGGGAACCAGAACACGAAGTTCTGAGTGACGACAATGATTCAGAGTATAATGCTGAAGTTTCCTCTGATGGGGCTAGGGCAAGCCCATGTTCCAACTCTTCAAATGAACTTGAGTGCAGCTCCGAGGACAGTGACGTTGAAAATATTCACGAAAGTAGCTATCATTGGAAAAGAAGAAGAAAACATCCTAAGGTCAACGTCTCTACTTCATCTGGAAGACGTGATAAGAGGATTTTGGATGAGAATGATAGCTCGAATTCTGGAATTAAGAGAACCAAGAACCGAAGAATTGTCGTGAAGGCTTCAAAAAGAAAACATTCTGATGTCAAAGCATCACGGCCGCAGAGAGCAGCAGCTCAAAATGCTCGATCCTTGCTTTCTAAAATTTCTGGAAGCTCTTCGGATGAAGTTGATGATGATAATGATTCATCCAACAGTGAATCTGATAGAAGCATACCCACTTTGCGACAGTTGGACAAACCATCTCAGATGCTGGAATCTCTTTCAAATGACAAACAGAAGAAAAGATTGATTGTAAAGATCTCTGTTAAGAAGCCAGCAGAGTCTATGGGAAGCAAGGGAGATGTGATAAATCAGGCTGATTTAGAGCAACTATCTTCCAAACCTTTGGAGGAGAATCACAGAGTGATTGGTATATATTCCAGAGAACCCGGGTCAAGTTCTGTAGATGCAAAAGGTGATTCAGGGTGTCAGAGTATTCCCTACTCTATGAATACGCCACAGAGAGAAAAGGCCGATAATCAGTTGATAAGATCTTCAGATCAAGACCAGAATATGTGCAAGTGGAGGGAAGAGATTCCTGTTTGTGAACCTACCGAATTAACTGCGCCTGAGAACATAGAAGAAGCCCAACCATTTTATGGGGATGAAGCTGATGAGATTCTTCCAAAGAAAGTTCGACGACTGAGGTTAAAGCTTCGGCATCCCAACAGTCCTCGAAAACTAGAACCTGATGAGGTGGCAGATGATTTGGCAGATGGTGGAGATGGGTTTGCATCCATAGCTCCCTCTTTCATGAATCCGATTATGGATTCTGAACCTGTGATAGATAGCGTTAGAGATTCTTCTGCACATAACTTTGAGTTTGGAGAAGCTACAGCTGATGTGATACGTAGGAAAAGATCCATAAGAAGTGAATCTAGTACAAGAAATAGCGCATTACGCATAAGGTTGGGCTCTGGATCTGTAGACAAAATAAAGAAACAAGGGATTCCTTCCACAAGCGTGTATGATGATGCATCACTTGAAGAATGGCCTTCTACCTCAAAAGCTGGGTCCAGGTCTAGATCTGCAAGCGTCAGCAAACCAAGTCTTCATACTGGGATAAGGTTGAATAGTGTCTCAGGAAAAATCTCATGGTTATTGTTGTCTGAACACGAGGAAGGCTGCCGTTATATACCTCAGCTAGGGGATGAAGTTATTTACTTCAAGCAGGGTCATCAAGAGTTCCTTAAAACTAAAGAATTAAATGACAGGGACCGATCAAGGTACCTTCCCCGAAACCTAGGAGCAGTAGAGATTTGCAAAGTCGAGAAACTTAACTATGATACATATCCTGGTTCTGGAGATAGCTGCTGCAAAATGACCCTCAGGGTTCTGGATTCTTCTTCATCACATGCCTCCCGCAAAGAGTTTCAACTGACACTTCCTGAGCTCATTAATTTCCCTGATTTTATTGTGGAGAAGACTCGATACGACGCTGCAATTCAAACAAACTGGAAAATTGGTAATGAGTGCCGTGTGTGGTGGAGAGACGCAACCGGTGAAGGCGGGGCTTGGTGGGAAGGTAGGATTGAGTCTTCACAAGTAAAATCCACTGACTTCCCAGAGAGTCCATGGGAAAGATACAGAGTTGTCTATGAAACAGGGGAAACGAGTCTTCACAGCCCGTGGGAGTTTGACAATCCCGAGTTTCCCTGGGAAAAATCTACCATCGAAGATGAGAGAAGAGAGAAACTGCTTTCATTATTTGCTGGACTAGTAAAATCAATCAGCAAGCATCAGGATAGTTACGGGATCCAAAAGCTAAACGAAGCAGCTCAAAAGATGGATTTCTGCAATAGGTTCCCGGTTCCATTATACCCTGAGCTGATTCACGAAAGACTAGAGAATCAGTACTACAGAAGTATTGAATCGTTTAAACACGACGTGGATGCAATGCTCTCAAATGCGGAGTTGTATTTCGTTAGAAGTGCACATATGCTTTCGAAGATAAAGCGACTGCGAGATAAATTGACAAAAACGTTAAGAAAGCTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1520

Amino Acids

171.53

Weight (kDa)

6.62

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRWD1_N PF25437 31 - 128 1e-29 BRWD1-like, N-terminal domain
Beta-prop_TEP1_2nd PF25047 220 - 350 1.3e-12 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 222 - 312 3.6e-19 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 222 - 353 6e-24 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 222 - 360 5.5e-17 CDC20/Fizzy WD40 domain
WDR55 PF24796 223 - 394 4.3e-09 WDR55
Beta-prop_WDR5 PF25175 223 - 358 1.7e-27 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 223 - 312 7e-07 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 224 - 304 2.2e-11 Prp19 WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 225 - 361 1.5e-09 CAF1B/HIR1 beta-propeller domain
WD40_Gbeta PF25391 226 - 356 2.3e-14 G protein beta WD-40 repeat protein
WD40 PF00400 227 - 263 6.1e-08 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 229 - 305 1.3e-10 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 231 - 365 5.2e-12 WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 235 - 349 4.2e-07 MABP1/WDR62 second WD40 domain
Beta-prop_SCAP PF24017 247 - 351 1.7e-09 SCAP Beta-propeller
WD40 PF00400 269 - 304 8e-07 WD domain, G-beta repeat
EIF3I PF24805 274 - 364 1.1e-06 EIF3I
Beta-prop_WDR3_2nd PF25172 275 - 410 1.5e-08 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 276 - 355 5.4e-12 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 279 - 361 4.9e-13 WDHD1 first WD40 domain
WD40 PF00400 310 - 350 1.6e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 527 - 646 2e-10 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 530 - 653 6.2e-12 THOC3 beta-propeller domain
BRWD_AD PF25313 1229 - 1402 5.5e-56 BRWD/PHIP ancillary domain-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 776
AbsI CCTCGAGG 1 cut(s) 1548
Acc36I ACCTGC 1 cut(s) 1430
Acc65I GGTACC 1 cut(s) 3789
AccB1I GGYRCC 2 cut(s) 464, 3789
AccB7I CCANNNNNTGG 1 cut(s) 3161
AccI GTMKAC 3 cut(s) 717, 1810, 3489
AccII CGCG 1 cut(s) 1431
AclI AACGTT 1 cut(s) 4544
AcoI YGGCCR 5 cut(s) 187, 539, 852, 1903, 2618
AcsI RAATTY 7 cut(s) 43, 204, 783, 1390, 1469, 2536, 2664
AcuI CTGAAG 8 cut(s) 62, 867, 1083, 1382, 1532, 2042, 2355, 3042
AcyI GRCGYC 2 cut(s) 998, 2155
AdeI CACNNNGTG 4 cut(s) 358, 1589, 2926, 4450
AfaI GTAC 6 cut(s) 1629, 1826, 2279, 3445, 3791, 4418
AfeI AGCGCT 1 cut(s) 1765
AfiI CCNNNNNNNGG 7 cut(s) 771, 1550, 1553, 2349, 3161, 3707, 3863
AflIII ACRYGT 1 cut(s) 2011
AgeI ACCGGT 1 cut(s) 4061
AhlI ACTAGT 1 cut(s) 4279
AjiI CACGTC 3 cut(s) 1562, 2501, 4450
AjnI CCWGG 5 cut(s) 242, 1394, 3578, 3856, 4217
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AleI CACNNNNGTG 2 cut(s) 612, 3524
Alw21I GWGCWC 3 cut(s) 619, 3957, 4498
Alw26I GTCTC 8 cut(s) 192, 507, 581, 1944, 2021, 2485, 3646, 4047
Alw44I GTGCAC 1 cut(s) 4494
AlwNI CAGNNNCTG 2 cut(s) 2102, 2773
Ama87I CYCGRG 3 cut(s) 1548, 2951, 4208
Aor51HI AGCGCT 1 cut(s) 1765
ApaLI GTGCAC 1 cut(s) 4494
ApoI RAATTY 7 cut(s) 43, 204, 783, 1390, 1469, 2536, 2664
ArsI GACNNNNNNTTYG 2 cut(s) 3560, 3592
AseI ATTAAT 1 cut(s) 3960
AsiGI ACCGGT 1 cut(s) 4061
Asp700I GAANNNNTTC 5 cut(s) 1861, 2424, 2596, 2677, 3096
Asp718I GGTACC 1 cut(s) 3789
AspA2I CCTAGG 1 cut(s) 3805
AspLEI GCGC 5 cut(s) 725, 805, 1766, 3130, 3458
AspS9I GGNCC 7 cut(s) 121, 167, 1285, 1556, 2183, 3576, 3778
AsuC2I CCSGG 3 cut(s) 2952, 2953, 4370
AsuHPI GGTGA 5 cut(s) 370, 848, 1988, 2990, 4076
AsuII TTCGAA 2 cut(s) 41, 4508
AsuNHI GCTAGC 1 cut(s) 815
AvaI CYCGRG 3 cut(s) 1548, 2951, 4208
AvaII GGWCC 3 cut(s) 121, 3576, 3778
AvrII CCTAGG 1 cut(s) 3805
AxyI CCTNAGG 2 cut(s) 2469, 3890
BaeGI GKGCMC 1 cut(s) 4498
BalI TGGCCA 2 cut(s) 189, 1905
BamHI GGATCC 2 cut(s) 1115, 4317
BanI GGYRCC 2 cut(s) 464, 3789
BanII GRGCYC 2 cut(s) 3479, 3957
BarI GAAGNNNNNNTAC 2 cut(s) 3977, 4009
BauI CACGAG 2 cut(s) 1120, 3677
BbsI GAAGAC 5 cut(s) 2503, 3605, 3992, 4092, 4172
Bbv12I GWGCWC 3 cut(s) 619, 3957, 4498
BbvCI CCTCAGC 1 cut(s) 3702
BceAI ACGGC 5 cut(s) 807, 839, 2633, 3675, 4023
BcgI CGANNNNNNTGC 6 cut(s) 1421, 1455, 3107, 3141, 4436, 4470
BciT130I CCWGG 5 cut(s) 244, 1396, 3580, 3858, 4219
BciVI GTATCC 3 cut(s) 3, 342, 2103
BclI TGATCA 1 cut(s) 2020
BcnI CCSGG 3 cut(s) 2952, 2953, 4370
BcoDI GTCTC 8 cut(s) 192, 507, 581, 1944, 2021, 2485, 3646, 4047
BcuI ACTAGT 1 cut(s) 4279
BfmI CTRYAG 4 cut(s) 2964, 3396, 3486, 4420
BfoI RGCGCY 1 cut(s) 1767
BfuAI ACCTGC 1 cut(s) 1430
BfuI GTATCC 3 cut(s) 3, 342, 2103
BglII AGATCT 3 cut(s) 2820, 3053, 3587
BlnI CCTAGG 1 cut(s) 3805
BmcAI AGTACT 1 cut(s) 4418
Bme1390I CCNGG 8 cut(s) 244, 1396, 2952, 2953, 3580, 3858, 4219, 4370
Bme18I GGWCC 3 cut(s) 121, 3576, 3778
BmeT110I CYCGRG 3 cut(s) 1548, 2951, 4208
BmgBI CACGTC 3 cut(s) 1562, 2501, 4450
BmgT120I GGNCC 7 cut(s) 121, 167, 1285, 1556, 2183, 3576, 3778
BmrFI CCNGG 8 cut(s) 244, 1396, 2952, 2953, 3580, 3858, 4219, 4370
BmrI ACTGGG 2 cut(s) 2290, 3630
BmtI GCTAGC 1 cut(s) 819
BmuI ACTGGG 2 cut(s) 2290, 3630
BoxI GACNNNNGTC 1 cut(s) 997
BpiI GAAGAC 5 cut(s) 2503, 3605, 3992, 4092, 4172
BplI GAGNNNNNCTC 4 cut(s) 319, 351, 2384, 2416
BpmI CTGGAG 2 cut(s) 981, 3885
Bpu10I CCTNAGC 3 cut(s) 3702, 3951, 4386
Bpu14I TTCGAA 2 cut(s) 41, 4508
BpuEI CTTGAG 3 cut(s) 214, 325, 2411
BpuMI CCSGG 3 cut(s) 2952, 2953, 4370
BsaAI YACGTR 2 cut(s) 1466, 3413
BsaBI GATNNNNATC 2 cut(s) 1734, 3852
BsaHI GRCGYC 2 cut(s) 998, 2155
BsaWI WCCGGW 1 cut(s) 4061
Bsc4I CCNNNNNNNGG 7 cut(s) 771, 1550, 1553, 2349, 3161, 3707, 3863
Bse118I RCCGGY 2 cut(s) 771, 4061
Bse21I CCTNAGG 2 cut(s) 2469, 3890
Bse3DI GCAATG 4 cut(s) 1132, 1213, 2252, 4464
Bse8I GATNNNNATC 2 cut(s) 1734, 3852
BseBI CCWGG 5 cut(s) 244, 1396, 3580, 3858, 4219
BseJI GATNNNNATC 2 cut(s) 1734, 3852
BseLI CCNNNNNNNGG 7 cut(s) 771, 1550, 1553, 2349, 3161, 3707, 3863
BseMI GCAATG 4 cut(s) 1132, 1213, 2252, 4464
BseRI GAGGAG 5 cut(s) 606, 1515, 1536, 1566, 2927
BseSI GKGCMC 1 cut(s) 4498
BseX3I CGGCCG 1 cut(s) 2618
BseYI CCCAGC 1 cut(s) 3572
BsgI GTGCAG 2 cut(s) 2416, 3354
Bsh1236I CGCG 1 cut(s) 1431
Bsh1285I CGRYCG 1 cut(s) 2621
BshNI GGYRCC 2 cut(s) 464, 3789
BshTI ACCGGT 1 cut(s) 4061
BsiEI CGRYCG 1 cut(s) 2621
BsiHKAI GWGCWC 3 cut(s) 619, 3957, 4498
BsiHKCI CYCGRG 3 cut(s) 1548, 2951, 4208
BsiSI CCGG 4 cut(s) 772, 2952, 4062, 4370
BslFI GGGAC 4 cut(s) 966, 972, 1888, 3791
BslI CCNNNNNNNGG 7 cut(s) 771, 1550, 1553, 2349, 3161, 3707, 3863
BsmAI GTCTC 8 cut(s) 192, 507, 581, 1944, 2021, 2485, 3646, 4047
BsmBI CGTCTC 4 cut(s) 192, 2021, 2485, 4047
BsmFI GGGAC 4 cut(s) 966, 972, 1888, 3791
BsmI GAATGC 4 cut(s) 936, 980, 1672, 1954
BsoBI CYCGRG 3 cut(s) 1548, 2951, 4208
Bsp119I TTCGAA 2 cut(s) 41, 4508
Bsp1286I GDGCHC 4 cut(s) 619, 3479, 3957, 4498
Bsp19I CCATGG 2 cut(s) 1474, 4136
Bsp68I TCGCGA 1 cut(s) 1431
BspFNI CGCG 1 cut(s) 1431
BspHI TCATGA 3 cut(s) 1264, 1405, 3315
BspMI ACCTGC 1 cut(s) 1430
BspOI GCTAGC 1 cut(s) 819
BspQI GCTCTTC 1 cut(s) 2683
BspT104I TTCGAA 2 cut(s) 41, 4508
BspT107I GGYRCC 2 cut(s) 464, 3789
BsrDI GCAATG 4 cut(s) 1132, 1213, 2252, 4464
BsrFI RCCGGY 2 cut(s) 771, 4061
BssAI RCCGGY 2 cut(s) 771, 4061
BssNAI GTATAC 1 cut(s) 1811
BssNI GRCGYC 2 cut(s) 998, 2155
BssSI CACGAG 2 cut(s) 1120, 3677
BssT1I CCWWGG 4 cut(s) 1474, 1972, 3805, 4136
Bst1107I GTATAC 1 cut(s) 1811
Bst2BI CACGAG 2 cut(s) 1120, 3677
Bst2UI CCWGG 5 cut(s) 244, 1396, 3580, 3858, 4219
Bst4CI ACNGT 6 cut(s) 614, 1709, 2411, 2717, 2751, 3233
Bst6I CTCTTC 5 cut(s) 81, 2383, 2683, 3087, 4243
BstACI GRCGYC 2 cut(s) 998, 2155
BstAPI GCANNNNNTGC 2 cut(s) 641, 1166
BstBAI YACGTR 2 cut(s) 1466, 3413
BstBI TTCGAA 2 cut(s) 41, 4508
BstDSI CCRYGG 5 cut(s) 823, 1474, 1583, 4136, 4190
BstENI CCTNNNNNAGG 3 cut(s) 1548, 1551, 3705
BstFNI CGCG 1 cut(s) 1431
BstH2I RGCGCY 1 cut(s) 1767
BstHHI GCGC 5 cut(s) 725, 805, 1766, 3130, 3458
BstMAI GTCTC 8 cut(s) 192, 507, 581, 1944, 2021, 2485, 3646, 4047
BstMCI CGRYCG 1 cut(s) 2621
BstNI CCWGG 5 cut(s) 244, 1396, 3580, 3858, 4219
BstNSI RCATGY 5 cut(s) 521, 554, 639, 2015, 3920
BstPAI GACNNNNGTC 1 cut(s) 997
BstSCI CCNGG 8 cut(s) 242, 1394, 2950, 2951, 3578, 3856, 4217, 4368
BstSFI CTRYAG 4 cut(s) 2964, 3396, 3486, 4420
BstSLI GKGCMC 1 cut(s) 4498
BstSNI TACGTA 1 cut(s) 3413
BstUI CGCG 1 cut(s) 1431
BstV2I GAAGAC 5 cut(s) 2503, 3605, 3992, 4092, 4172
BstX2I RGATCY 9 cut(s) 458, 1115, 2062, 2820, 3053, 3422, 3482, 3587, 4317
BstXI CCANNNNNNTGG 1 cut(s) 2908
BstYI RGATCY 9 cut(s) 458, 1115, 2062, 2820, 3053, 3422, 3482, 3587, 4317
BstZ17I GTATAC 1 cut(s) 1811
BstZI CGGCCG 1 cut(s) 2618
Bsu36I CCTNAGG 2 cut(s) 2469, 3890
BsuI GTATCC 3 cut(s) 3, 342, 2103
BtgI CCRYGG 5 cut(s) 823, 1474, 1583, 4136, 4190
BtgZI GCGATG 1 cut(s) 1446
BtrI CACGTC 3 cut(s) 1562, 2501, 4450
BtsIMutI CAGTG 8 cut(s) 756, 957, 1073, 1110, 1714, 2416, 2722, 4116
BtuMI TCGCGA 1 cut(s) 1431
BveI ACCTGC 1 cut(s) 1430
CaiI CAGNNNCTG 2 cut(s) 2102, 2773
CciI TCATGA 3 cut(s) 1264, 1405, 3315
CfoI GCGC 5 cut(s) 725, 805, 1766, 3130, 3458
Cfr10I RCCGGY 2 cut(s) 771, 4061
Cfr13I GGNCC 7 cut(s) 121, 167, 1285, 1556, 2183, 3576, 3778
Cfr9I CCCGGG 1 cut(s) 2951
CseI GACGC 8 cut(s) 513, 987, 1497, 2038, 2144, 3586, 4007, 4064
Csp6I GTAC 6 cut(s) 1628, 1825, 2278, 3444, 3790, 4417
CspAI ACCGGT 1 cut(s) 4061
CviQI GTAC 6 cut(s) 1628, 1825, 2278, 3444, 3790, 4417
DraI TTTAAA 2 cut(s) 384, 4441
DraIII CACNNNGTG 4 cut(s) 358, 1589, 2926, 4450
DrdI GACNNNNNNGTC 1 cut(s) 776
DseDI GACNNNNNNGTC 1 cut(s) 776
EaeI YGGCCR 5 cut(s) 187, 539, 852, 1903, 2618
EagI CGGCCG 1 cut(s) 2618
Eam1104I CTCTTC 5 cut(s) 81, 2383, 2683, 3087, 4243
EarI CTCTTC 5 cut(s) 81, 2383, 2683, 3087, 4243
Ecl136II GAGCTC 1 cut(s) 3955
EclXI CGGCCG 1 cut(s) 2618
Eco105I TACGTA 1 cut(s) 3413
Eco130I CCWWGG 4 cut(s) 1474, 1972, 3805, 4136
Eco24I GRGCYC 2 cut(s) 3479, 3957
Eco32I GATATC 2 cut(s) 236, 1505
Eco47I GGWCC 3 cut(s) 121, 3576, 3778
Eco47III AGCGCT 1 cut(s) 1765
Eco52I CGGCCG 1 cut(s) 2618
Eco53kI GAGCTC 1 cut(s) 3955
Eco57I CTGAAG 8 cut(s) 62, 867, 1083, 1382, 1532, 2042, 2355, 3042
Eco81I CCTNAGG 2 cut(s) 2469, 3890
Eco88I CYCGRG 3 cut(s) 1548, 2951, 4208
EcoICRI GAGCTC 1 cut(s) 3955
EcoNI CCTNNNNNAGG 3 cut(s) 1548, 1551, 3705
EcoRI GAATTC 2 cut(s) 1390, 2536
EcoRII CCWGG 5 cut(s) 242, 1394, 3578, 3856, 4217
EcoRV GATATC 2 cut(s) 236, 1505
EcoT14I CCWWGG 4 cut(s) 1474, 1972, 3805, 4136
EcoT22I ATGCAT 3 cut(s) 552, 1132, 3541
EcoT38I GRGCYC 2 cut(s) 3479, 3957
ErhI CCWWGG 4 cut(s) 1474, 1972, 3805, 4136
Esp3I CGTCTC 4 cut(s) 192, 2021, 2485, 4047
FalI AAGNNNNNCTT 4 cut(s) 338, 370, 3735, 3767
FaqI GGGAC 4 cut(s) 966, 972, 1888, 3791
FauI CCCGC 4 cut(s) 263, 942, 3932, 4064
FauNDI CATATG 2 cut(s) 546, 4500
FbaI TGATCA 1 cut(s) 2020
FblI GTMKAC 3 cut(s) 717, 1810, 3489
FriOI GRGCYC 2 cut(s) 3479, 3957
GlaI GCGC 5 cut(s) 724, 804, 1765, 3129, 3457
GsaI CCCAGC 1 cut(s) 3576
GsuI CTGGAG 2 cut(s) 981, 3885
HaeII RGCGCY 1 cut(s) 1767
HapII CCGG 4 cut(s) 772, 2952, 4062, 4370
HgaI GACGC 8 cut(s) 513, 987, 1497, 2038, 2144, 3586, 4007, 4064
HhaI GCGC 5 cut(s) 725, 805, 1766, 3130, 3458
Hin1I GRCGYC 2 cut(s) 998, 2155
Hin6I GCGC 5 cut(s) 723, 803, 1764, 3128, 3456
HinP1I GCGC 5 cut(s) 723, 803, 1764, 3128, 3456
HincII GTYRAC 2 cut(s) 1303, 2476
HindII GTYRAC 2 cut(s) 1303, 2476
HindIII AAGCTT 2 cut(s) 362, 3215
HpaII CCGG 4 cut(s) 772, 2952, 4062, 4370
HphI GGTGA 5 cut(s) 370, 848, 1988, 2990, 4076
Hpy166II GTNNAC 9 cut(s) 718, 1006, 1303, 1811, 1825, 2476, 3110, 3490, 4496
Hpy8I GTNNAC 9 cut(s) 718, 1006, 1303, 1811, 1825, 2476, 3110, 3490, 4496
Hpy99I CGWCG 3 cut(s) 3204, 4001, 4451
HpyCH4III ACNGT 6 cut(s) 614, 1709, 2411, 2717, 2751, 3233
HpyCH4IV ACGT 8 cut(s) 1465, 1561, 2415, 2478, 2500, 3412, 4449, 4544
HpySE526I ACGT 8 cut(s) 1465, 1561, 2415, 2478, 2500, 3412, 4449, 4544
Hsp92I GRCGYC 2 cut(s) 998, 2155
HspAI GCGC 5 cut(s) 723, 803, 1764, 3128, 3456
KpnI GGTACC 1 cut(s) 3793
Ksp22I TGATCA 1 cut(s) 2020
LguI GCTCTTC 1 cut(s) 2683
MaeII ACGT 8 cut(s) 1465, 1561, 2415, 2478, 2500, 3412, 4449, 4544
MaeIII GTNAC 9 cut(s) 488, 836, 967, 1186, 1417, 1703, 2306, 2411, 4310
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 9 cut(s) 458, 1115, 2062, 2820, 3053, 3422, 3482, 3587, 4317
MhlI GDGCHC 4 cut(s) 619, 3479, 3957, 4498
MlsI TGGCCA 2 cut(s) 189, 1905
MluNI TGGCCA 2 cut(s) 189, 1905
MmeI TCCRAC 5 cut(s) 470, 1601, 2397, 2733, 2736
Mox20I TGGCCA 2 cut(s) 189, 1905
Mph1103I ATGCAT 3 cut(s) 552, 1132, 3541
MroXI GAANNNNTTC 5 cut(s) 1861, 2424, 2596, 2677, 3096
MscI TGGCCA 2 cut(s) 189, 1905
MslI CAYNNNNRTG 7 cut(s) 549, 612, 708, 834, 1293, 2601, 3524
Msp20I TGGCCA 2 cut(s) 189, 1905
MspA1I CMGCKG 2 cut(s) 1352, 3401
MspI CCGG 4 cut(s) 772, 2952, 4062, 4370
MspR9I CCNGG 8 cut(s) 244, 1396, 2952, 2953, 3580, 3858, 4219, 4370
MssI GTTTAAAC 1 cut(s) 4441
MunI CAATTG 1 cut(s) 975
Mva1269I GAATGC 4 cut(s) 936, 980, 1672, 1954
MvaI CCWGG 5 cut(s) 244, 1396, 3580, 3858, 4219
MvnI CGCG 1 cut(s) 1431
NciI CCSGG 3 cut(s) 2952, 2953, 4370
NcoI CCATGG 2 cut(s) 1474, 4136
NdeI CATATG 2 cut(s) 546, 4500
NheI GCTAGC 1 cut(s) 815
NmuCI GTSAC 5 cut(s) 836, 1186, 1703, 2306, 2411
NruI TCGCGA 1 cut(s) 1431
NsiI ATGCAT 3 cut(s) 552, 1132, 3541
NspI RCATGY 5 cut(s) 521, 554, 639, 2015, 3920
NspV TTCGAA 2 cut(s) 41, 4508
OliI CACNNNNGTG 2 cut(s) 612, 3524
PaeI GCATGC 1 cut(s) 554
PaeR7I CTCGAG 1 cut(s) 1548
PagI TCATGA 3 cut(s) 1264, 1405, 3315
PasI CCCWGGG 1 cut(s) 4218
PciI ACATGT 1 cut(s) 2011
PciSI GCTCTTC 1 cut(s) 2683
PctI GAATGC 4 cut(s) 936, 980, 1672, 1954
PdmI GAANNNNTTC 5 cut(s) 1861, 2424, 2596, 2677, 3096
PflMI CCANNNNNTGG 1 cut(s) 3161
PinAI ACCGGT 1 cut(s) 4061
PmeI GTTTAAAC 1 cut(s) 4441
Ppu21I YACGTR 2 cut(s) 1466, 3413
PscI ACATGT 1 cut(s) 2011
PshAI GACNNNNGTC 1 cut(s) 997
PshBI ATTAAT 1 cut(s) 3960
Psp124BI GAGCTC 1 cut(s) 3957
Psp1406I AACGTT 1 cut(s) 4544
Psp6I CCWGG 5 cut(s) 242, 1394, 3578, 3856, 4217
PspFI CCCAGC 1 cut(s) 3572
PspGI CCWGG 5 cut(s) 242, 1394, 3578, 3856, 4217
PspPI GGNCC 7 cut(s) 121, 167, 1285, 1556, 2183, 3576, 3778
PspXI VCTCGAGB 1 cut(s) 1548
PstNI CAGNNNCTG 2 cut(s) 2102, 2773
PsuI RGATCY 9 cut(s) 458, 1115, 2062, 2820, 3053, 3422, 3482, 3587, 4317
PvuII CAGCTG 2 cut(s) 1352, 3401
RruI TCGCGA 1 cut(s) 1431
RsaI GTAC 6 cut(s) 1629, 1826, 2279, 3445, 3791, 4418
RsaNI GTAC 6 cut(s) 1628, 1825, 2278, 3444, 3790, 4417
RseI CAYNNNNRTG 7 cut(s) 549, 612, 708, 834, 1293, 2601, 3524
SacI GAGCTC 1 cut(s) 3957
SapI GCTCTTC 1 cut(s) 2683
Sau96I GGNCC 7 cut(s) 121, 167, 1285, 1556, 2183, 3576, 3778
ScaI AGTACT 1 cut(s) 4418
ScrFI CCNGG 8 cut(s) 244, 1396, 2952, 2953, 3580, 3858, 4219, 4370
SduI GDGCHC 4 cut(s) 619, 3479, 3957, 4498
SfcI CTRYAG 4 cut(s) 2964, 3396, 3486, 4420
Sfr274I CTCGAG 1 cut(s) 1548
SfuI TTCGAA 2 cut(s) 41, 4508
SinI GGWCC 3 cut(s) 121, 3576, 3778
SlaI CTCGAG 1 cut(s) 1548
SmaI CCCGGG 1 cut(s) 2953
SmiMI CAYNNNNRTG 7 cut(s) 549, 612, 708, 834, 1293, 2601, 3524
SmlI CTYRAG 4 cut(s) 193, 304, 1548, 2390
SmoI CTYRAG 4 cut(s) 193, 304, 1548, 2390
SnaBI TACGTA 1 cut(s) 3413
SpeI ACTAGT 1 cut(s) 4279
SphI GCATGC 1 cut(s) 554
SspI AATATT 2 cut(s) 1149, 2425
SstI GAGCTC 1 cut(s) 3957
StyD4I CCNGG 8 cut(s) 242, 1394, 2950, 2951, 3578, 3856, 4217, 4368
StyI CCWWGG 4 cut(s) 1474, 1972, 3805, 4136
TaaI ACNGT 6 cut(s) 614, 1709, 2411, 2717, 2751, 3233
TaiI ACGT 8 cut(s) 1468, 1564, 2418, 2481, 2503, 3415, 4452, 4547
TaqII GACCGA 1 cut(s) 3795
TatI WGTACW 4 cut(s) 1627, 2277, 3443, 4416
TauI GCSGC 3 cut(s) 544, 1637, 2623
TscAI CASTG 8 cut(s) 763, 964, 1073, 1117, 1714, 2416, 2722, 4123
TseFI GTSAC 5 cut(s) 836, 1186, 1703, 2306, 2411
Tsp45I GTSAC 5 cut(s) 836, 1186, 1703, 2306, 2411
TspGWI ACGGA 2 cut(s) 609, 2079
TspMI CCCGGG 1 cut(s) 2951
TspRI CASTG 8 cut(s) 763, 964, 1073, 1117, 1714, 2416, 2722, 4123
Van91I CCANNNNNTGG 1 cut(s) 3161
VneI GTGCAC 1 cut(s) 4494
VpaK11BI GGWCC 3 cut(s) 121, 3576, 3778
VspI ATTAAT 1 cut(s) 3960
XagI CCTNNNNNAGG 3 cut(s) 1548, 1551, 3705
XapI RAATTY 7 cut(s) 43, 204, 783, 1390, 1469, 2536, 2664
XbaI TCTAGA 2 cut(s) 112, 3584
XceI RCATGY 5 cut(s) 521, 554, 639, 2015, 3920
XcmI CCANNNNNNNNNTGG 4 cut(s) 1481, 1970, 3158, 4134
XhoI CTCGAG 1 cut(s) 1548
XmaI CCCGGG 1 cut(s) 2951
XmaJI CCTAGG 1 cut(s) 3805
XmiI GTMKAC 3 cut(s) 717, 1810, 3489
XmnI GAANNNNTTC 5 cut(s) 1861, 2424, 2596, 2677, 3096
ZrmI AGTACT 1 cut(s) 4418
Zsp2I ATGCAT 3 cut(s) 552, 1132, 3541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.