RLG00000000563

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003305
Physical Location & Seq
Reverse (-)
1992295 .. 2002974
10680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000563

Sequence Viewer

Length: 4782 bp
ATGGATCCTTGGAAGTGCACTCCGTTTGGTGGTGCAAATTCTCTTAATATGGCACCTTCAAATATATTAAGTAAGGTGAATGAGAGGGCTAAATTTGAAAAAGGAGAGAGGGATACAGGTCACACTGTTGAGGCTGGAGTAGATATAGATATTAGAGAAGTATACTTTCTGATTATGCACTTTCTATCCGTTGGGCCATGTCGGAGGACTTTTGAACAATTTGCAAATGATCTTGTGGAACATGAGCTCCTGCCTAGAAGGTATCATGCTTGGTTTTCAAGAAGTGGTATAAGCAGTAGCAATGATAATGATAATAACACCTCTTTCCCACTGAGTTACAACAAATTGGTTGAAAGGTATCCTCATATAGAGAAGGATCACTTGGTAAAGCTTCTAAAGCAACTGATGTTGAGTATAGCTACTCCTTTGCATGGCAAGGTTGGAAGAAATACTCTGAATGCAGCTGATGTCCCTACATTATTGGGAACTGGTTCTTTCTCGCTTCTGGATTGTGATAGGAATGTGGTGAATAGGCGAGTTAAGCCGCTTCCTGCATACCTGCGTTGGCCTTACATGCAGGCTGGTCAAGTTCATGGACTTGGTTTAAGGGAAATTGGAGGAGGTTTTGCTAAGCATCATCGTGCACCATCTATTCGTTCTGCATGCTATGCCATTGCCAAACCATCAACTATGGTGCAAAAGATGAACAACAAAAAGAAGCTAAGGGGGCACCGTAATGCTGTCTATTGTGCCATTTTTGATCGGTCGGGGAGATATGTTATCACTGGATCGGATGATCGTCTTGTCAAGATTTGGTCAATGGAAACTGCACTTTGCTTGGCTAGCTGTCGTGGACATGAAGGTGACATTACTGACTTGGCTGTGAGTTCAAACAACACTTTGGTGGCATCTGCATCAAATGATTTTGTTATTCGAGTTTGGCGTTTGCCAGATGGATATCCCATTTCCGTTCTGCAGGGCCATACTGGAGCTGTGACTGCTATAGCATTTAGTCCAAGGCTTAGTGCAATTTACCAACTTTTATCGTCATCAGATGACGGGACTTGTCGAATTTGGGATGCTAGGTCCTCTCAGTGCCCTCCACGAATATTCATGCCAAAACCTTCGGACCCTTTAACAGGGAAGAGCAATGGCATTTCAAGTCTTGGACCCTCATCAAGCAGTGGCCCACAGGGCCATCAAATACTTTGTTGTGCTTACAATGCTAGTGGAACTGTTTTTGTCACTGGTAGCTCTGACACTTTTGCCCGGGTATGGAGTGCTGTGAAATCTAATGCAGATGACTCAGAACAACCAATACATGAGATGGATGTATTGTCTGGCCATGAGAATGATGTCAATTATGTGCAATTCAGTGGTTGTGCCATTCCATCAAAATCTTCATTTTCTGACTCTTTGAAGGAGGAGAATATTATGAAGTCCAAAAATTCCTGGTTTTGTCACAATAACATCGTTACCTGCTCTCGCGATGGCAGTGCCATTATATGGGTTCCAAAATCACACAGATCACATGGGAAATTTGGACGATGGATTCGTGCTTACCATCTCAAAGTTCCACCTCCCCCACTGCCTCCTCAACCTCCTCGAGGTGGCCCACGTCAGAGATTTCTTCCTACCCCTCGTGGTGTTAACATGATTGTGTGGAGCCTGGATAACCGCTTTGTGCTTGCAGCTATCATGGATTGCAGAATCTGCGTTTGGAATGCTGTTGATGGTAGCTTAGTACATTCTTTGACCGGTCATAATGCATCTTCTTATGTTTTGGATGTTCATCCCTTTAATCCTCGGATTGCTATGAGTGCTGGGTATGATGGACAAACAATCATATGGGATATCTGGGAAGGAACACCCATCAAGATTTATGAAGTTGGACACGTTAAGTTGGTTGATGGGAAGTTTTCTGCGGATGGGACATCGATTGTACTTTCAGATGATGTGGGCCAAATATATTTAATAAACACAGGTGAAGGAGAGTCCCAGAAAGATGCTAAATATGATCAGTTCTTTCTAGGAGATTATCGCCCCCTTGTGCGGGATACTGCTGGACATCTTCTTGATCAGGAGACACAACTTCCTGCTTATCGACGGAATCTTCAAGATCCTCTCTGCGATTCAAGTATGATTCCATATCCAGAGCCATACCAGAGTCAATACCAGCGGCGGCGACTCGGTGCATTGGGAATGGAGTGGAAACCTTCATCAGTAAATTTTGCAGTTGGCCTGGATATTGGTGCAGGCATGGACTATCATTTGCCTCCATTGCCTGATTGGGAGAGAGTGATAGAGCCACTTCCAGACTTCATTGATGCCTTGCTATGGGAGCCAGAAAATGAATTCATAAGTGAAGATACTGATTCAGATTTTAATGTCACTGAGGAAAATTCTAGTGAAGATGAGAAAGGAAATATTAGCACCAGCTCTTCTAGTGCTCCAGAATGTAGTGCAGAAGACAGTGAAGTTGGATGCAGCAATCAGGATGGCCTTCGCAGATCAAGAAGAAAAACACAAAAGGTTGCCTCTTCTGAGAGACGTGGGAAGAAAAGGAATTTGGGTGAGGAGGATGGCATTATATCTGGGAGTAATAGAATTAAAAATCCAAAAGGTGGCCGAAAAGTTTCAAAGAGGAACTGTAGAGCAAAAACGTCAAGACCCCAGAGAGTTGCAGCACGGAATGCTCGAAATGTGCTTTCTCAGAATCCGGGAACATCTACAGATGGAGAAGAAGATGACTGGGAAGCTGATTCATCAGATAGTGAGCCACAGCAGAAAAAGTTCCGTAGTCAAAGCAATGAGTGTGATGGAAGCTTCCAGAATATGCAAGAGTTACAGAATAATGAAAAACCATCTCTTCGTGAGATTCATGATATAGCCAATCCTCTTGCTGTTCCTGAGTCTCAAACAAATGTTACAAGAAAAAAATTGGTTTTGAAGCTTCCGCTCCGTCGTGATTTGAAGAAGCAAGAAGCTCTGCAGGATTCTTCATCTTCTAGATATTGCGAAGTCGGTCAAGATAAGAAGATTAATAATAGCTCTGTGGATGGAGCTTCATCTTTGGCAGATGCACTTGATTTGCCGTTCTCTGGAAATTTCATGAGCAATGTATTTACAGATCCTGGGCAAACCGTAGAGGCTGGGTTTCCTTTGGAGGTATCTTCATGTAACATGGAGAACAAAATTAGGTGGGGAGAGGTCAAGACACGGACATCAAAGCATGCAAGATCAGGAGATCCCATACCAATTGATCCAGCCGCTGGGTCGCTTGTCAGTTCTGAAGTCCGTATGGCAGATAGAAATGTCGTTCGGGATAAGGAACATATTAGAGAGTTTTCTCATGAATCAACGTCAAAAGGTTCTGGAATAAAGCACTCTGATGAATCAATGGATAATGCTTCCCTTAAGTTTCTTGCACAAGAAACAGGTTCTGGGAACTTAATGCCTGAAGATCCTTCATGCATGGACCGGAATTTAAATCTGGAAGTACCAGAAATGGGTGGAGGTTCTGGCACATTGAGTTCGTGGAGATTTTTCTGCAAGGATAGGACAAAAACAGAAGGGTTTGATGGTAAATTGGAAGAAAATACTTCTCGTATCAATGATCATTATGATGCAGGAATGAATCTCCCTGAAGCTGCAACTGATTCAGCACGCAGGCTAAGAACCTTAAAGATCAAGGCGACTTCACGGGAACCAGACTCTGTGAGCCGTATCCCTAAGTCGAGAGGGGGCCAGCAAAGGACATCTATGGATGCAGAAGATCCCCCTGCCAAGGTCCGTGATACAAGACTTCAGAGATCAAGGTCCACTAGAAATCAGTCTGACCAAAGTTTGTCAACCCAAAGGATGTTGGATAACCCTGTTGGAAAACTTTCATGGCTGATGTTGTCTAAACACGAGGAAGGTTACCGTTATATTCCTCAGCTAGGTGATGAAGTTGTATACTTGAGACAGGGTCATCAAGAGTATACGGAATTGGCTTTGAAGTCAGATCAAGGCCCTTGGGGTCCGTGGGGATCAATGAAGGAAAAAATCAGAGCTGTGGAAATCTGCAAGGTTGTAGGCCTTGAGTATGACTCCATGCCTGGTTCAGGGGAAAGCTGTAGCAAGATCTTATTCAGATTTGTGGAGTCTTCTTCTGCCGTGTGTGGTAAAACCTTCAAATTAACATTGCCTGAAATTGACTTTAATGACTTCATAGTTGAGAAAAGCTGGTACGATGCCGCCATTGGAAGAAACTGGGCAGCGGGAGAACACTGTGAGGTCTGGTGGAGGGACTCAGATGGAGGCGGAGCGTGGTGGCAAGGCCGAATTGTGCACTGTCAGGCAAAATCTCATGAGTTTCCTGATAGCCCGTGGTTAAGATATGCGGTTAGGTATGAGAATGAAGATGATATACCTCATAGGCATTGTCCTTGGGAACTGCATGATGTATCCATGTCGTGGGAAGCACCGCATATTGATCATGCAAGCAGAGATAAGCTGCTTCACTATTTTTCTAAATCGGAGAAGAAGGACTTTGAGGCCATCCAACAAATGAATCAAGCTGTTCTGAAGGTGGATTTCTGCAACAGCTTTCCTGTTCAATTGTACCCTGAACTAATCAAAGCAAGGTTAGAGAATGACTATTATAGGAGCTTGGAAGCGGTGAAGCATGACATAACCCAGATGCTTGAAAACGTCCGGCATTACTTCAAGAGAAATAACTTGCAAGCCAGGATTAAGCACCTTTCAAAATGGTTTAAGAAAAAAATTTCTAGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1594

Amino Acids

178.75

Weight (kDa)

7.04

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRWD1_N PF25437 41 - 138 6.2e-32 BRWD1-like, N-terminal domain
Beta-prop_TEP1_2nd PF25047 230 - 361 1.3e-12 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 232 - 340 1.5e-21 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 232 - 370 9.8e-29 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 232 - 366 5.9e-16 CDC20/Fizzy WD40 domain
WDR55 PF24796 233 - 365 6.9e-08 WDR55
Beta-prop_WDR3_1st PF25173 233 - 366 6.2e-24 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 236 - 314 4.8e-11 Prp19 WD40 domain
WD40_Gbeta PF25391 237 - 365 6.5e-14 G protein beta WD-40 repeat protein
WD40 PF00400 238 - 273 1.4e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 238 - 315 4.3e-11 WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 241 - 370 3e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 241 - 365 9.8e-12 WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 243 - 359 1.2e-07 MABP1/WDR62 second WD40 domain
Beta-prop_EML_2 PF23414 245 - 364 7.7e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP PF24017 257 - 363 7.7e-10 SCAP Beta-propeller
WD40 PF00400 279 - 314 3.5e-07 WD domain, G-beta repeat
EIF3I PF24805 284 - 366 2.6e-06 EIF3I
Beta-prop_THOC3 PF25174 286 - 368 1.1e-12 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 289 - 377 1.9e-13 WDHD1 first WD40 domain
WD40_Prp19 PF24814 302 - 367 5.3e-07 Prp19 WD40 domain
WD40 PF00400 320 - 360 3.9e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 547 - 666 2.9e-11 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 550 - 673 8.6e-13 THOC3 beta-propeller domain
BRWD_AD PF25313 1308 - 1484 8.4e-57 BRWD/PHIP ancillary domain-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1605
Acc36I ACCTGC 2 cut(s) 567, 1487
AccB1I GGYRCC 2 cut(s) 52, 729
AccB7I CCANNNNNTGG 4 cut(s) 1506, 2624, 3272, 4458
AccBSI CCGCTC 1 cut(s) 2959
AccI GTMKAC 3 cut(s) 162, 3957, 3983
AccII CGCG 1 cut(s) 1488
AcoI YGGCCR 2 cut(s) 1342, 2626
AcuI CTGAAG 5 cut(s) 3312, 3480, 3666, 3791, 4589
AfaI GTAC 5 cut(s) 1746, 1944, 3501, 4232, 4607
AflII CTTAAG 1 cut(s) 3416
AflIII ACRYGT 1 cut(s) 1894
AgeI ACCGGT 1 cut(s) 1757
AjiI CACGTC 2 cut(s) 1619, 2552
AjnI CCWGG 6 cut(s) 1451, 1668, 2241, 3133, 4099, 4730
AjuI GAANNNNNNNTTGG 6 cut(s) 365, 397, 1702, 1734, 2552, 2584
AleI CACNNNNGTG 1 cut(s) 902
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
Alw21I GWGCWC 5 cut(s) 20, 249, 646, 2452, 4335
Alw26I GTCTC 4 cut(s) 2078, 2542, 2919, 3958
Alw44I GTGCAC 3 cut(s) 16, 642, 4331
AlwNI CAGNNNCTG 5 cut(s) 1713, 3134, 3272, 3443, 3716
Ama87I CYCGRG 2 cut(s) 1269, 1605
ApaLI GTGCAC 3 cut(s) 16, 642, 4331
ApeKI GCWGC 7 cut(s) 461, 1691, 2487, 2684, 3650, 4259, 4498
ArsI GACNNNNNNTTYG 2 cut(s) 1536, 1568
AseI ATTAAT 1 cut(s) 3042
AsiGI ACCGGT 1 cut(s) 1757
Asp700I GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3886
AsuC2I CCSGG 3 cut(s) 1270, 1271, 2721
AsuHPI GGTGA 7 cut(s) 88, 538, 875, 1997, 2585, 3956, 4675
AsuNHI GCTAGC 1 cut(s) 842
AvaI CYCGRG 2 cut(s) 1269, 1605
AvaII GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
BaeGI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4335
BalI TGGCCA 1 cut(s) 1344
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 52, 729
BanII GRGCYC 1 cut(s) 249
BarI GAAGNNNNNNTAC 2 cut(s) 4395, 4427
BauI CACGAG 2 cut(s) 1641, 3911
BbsI GAAGAC 2 cut(s) 2475, 4140
Bbv12I GWGCWC 5 cut(s) 20, 249, 646, 2452, 4335
BbvCI CCTCAGC 1 cut(s) 3936
BbvI GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3637, 4271, 4485
BceAI ACGGC 3 cut(s) 3079, 3708, 4142
BcgI CGANNNNNNTGC 2 cut(s) 1478, 1512
BciT130I CCWGG 6 cut(s) 1453, 1670, 2243, 3135, 4101, 4732
BciVI GTATCC 5 cut(s) 106, 369, 2050, 3737, 4459
BclI TGATCA 4 cut(s) 2017, 2077, 3616, 4477
BcnI CCSGG 3 cut(s) 1270, 1271, 2721
BcoDI GTCTC 4 cut(s) 2078, 2542, 2919, 3958
BfmI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 2990, 4117
BfrI CTTAAG 1 cut(s) 3416
BfuAI ACCTGC 2 cut(s) 567, 1487
BfuI GTATCC 5 cut(s) 106, 369, 2050, 3737, 4459
BglI GCCNNNNNGGC 1 cut(s) 1194
BglII AGATCT 1 cut(s) 4125
BlpI GCTNAGC 1 cut(s) 630
Bme1390I CCNGG 9 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3135, 4101, 4732
Bme18I GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
BmeT110I CYCGRG 2 cut(s) 1269, 1605
BmgBI CACGTC 2 cut(s) 1619, 2552
BmrFI CCNGG 9 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3135, 4101, 4732
BmrI ACTGGG 2 cut(s) 2761, 4264
BmtI GCTAGC 1 cut(s) 846
BmuI ACTGGG 2 cut(s) 2761, 4264
BpiI GAAGAC 2 cut(s) 2475, 4140
BplI GAGNNNNNCTC 2 cut(s) 4076, 4108
BpmI CTGGAG 3 cut(s) 156, 1008, 2436
Bpu10I CCTNAGC 2 cut(s) 722, 3936
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 3982, 4103
BpuMI CCSGG 3 cut(s) 1270, 1271, 2721
Bsa29I ATCGAT 1 cut(s) 1937
BsaBI GATNNNNATC 2 cut(s) 957, 1791
BsaWI WCCGGW 2 cut(s) 1757, 3480
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse118I RCCGGY 1 cut(s) 1757
Bse1I ACTGG 6 cut(s) 493, 790, 991, 1252, 2756, 4259
Bse3DI GCAATG 7 cut(s) 307, 672, 1156, 2279, 2815, 3124, 4184
Bse8I GATNNNNATC 2 cut(s) 957, 1791
BseBI CCWGG 6 cut(s) 1453, 1670, 2243, 3135, 4101, 4732
BseCI ATCGAT 1 cut(s) 1937
BseJI GATNNNNATC 2 cut(s) 957, 1791
BseMI GCAATG 7 cut(s) 307, 672, 1156, 2279, 2815, 3124, 4184
BseMII CTCAG 9 cut(s) 323, 1106, 1320, 2385, 2535, 2726, 2901, 3950, 4308
BseNI ACTGG 6 cut(s) 493, 790, 991, 1252, 2756, 4259
BseRI GAGGAG 5 cut(s) 633, 1439, 1584, 1593, 2591
BseSI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4335
BseXI GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3637, 4271, 4485
BseYI CCCAGC 3 cut(s) 1823, 3152, 3272
BsgI GTGCAG 3 cut(s) 813, 2274, 2484
Bsh1236I CGCG 1 cut(s) 1488
Bsh1285I CGRYCG 1 cut(s) 767
BshNI GGYRCC 2 cut(s) 52, 729
BshTI ACCGGT 1 cut(s) 1757
BshVI ATCGAT 1 cut(s) 1937
BsiEI CGRYCG 1 cut(s) 767
BsiHKAI GWGCWC 5 cut(s) 20, 249, 646, 2452, 4335
BsiHKCI CYCGRG 2 cut(s) 1269, 1605
BsiSI CCGG 5 cut(s) 1270, 1758, 2720, 3481, 4699
BslFI GGGAC 5 cut(s) 455, 1075, 1945, 1981, 4304
BsmAI GTCTC 4 cut(s) 2078, 2542, 2919, 3958
BsmBI CGTCTC 1 cut(s) 2542
BsmFI GGGAC 5 cut(s) 455, 1075, 1945, 1981, 4304
BsmI GAATGC 3 cut(s) 463, 1729, 2698
BsoBI CYCGRG 2 cut(s) 1269, 1605
Bsp1286I GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4335
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp68I TCGCGA 1 cut(s) 1488
BspCNI CTCAG 9 cut(s) 324, 1105, 1319, 2386, 2536, 2725, 2902, 3949, 4307
BspDI ATCGAT 1 cut(s) 1937
BspFNI CGCG 1 cut(s) 1488
BspHI TCATGA 4 cut(s) 2881, 3111, 3352, 4351
BspMAI CTGCAG 2 cut(s) 978, 2994
BspMI ACCTGC 2 cut(s) 567, 1487
BspOI GCTAGC 1 cut(s) 846
BspQI GCTCTTC 2 cut(s) 1139, 2446
BspT107I GGYRCC 2 cut(s) 52, 729
BspTI CTTAAG 1 cut(s) 3416
BsrBI CCGCTC 1 cut(s) 2959
BsrDI GCAATG 7 cut(s) 307, 672, 1156, 2279, 2815, 3124, 4184
BsrFI RCCGGY 1 cut(s) 1757
BsrI ACTGG 6 cut(s) 493, 790, 991, 1252, 2756, 4259
BssAI RCCGGY 1 cut(s) 1757
BssNAI GTATAC 3 cut(s) 163, 3958, 3984
BssSI CACGAG 2 cut(s) 1641, 3911
BssT1I CCWWGG 5 cut(s) 8, 1016, 3786, 4016, 4430
Bst1107I GTATAC 3 cut(s) 163, 3958, 3984
Bst2BI CACGAG 2 cut(s) 1641, 3911
Bst2UI CCWGG 6 cut(s) 1453, 1670, 2243, 3135, 4101, 4732
Bst4CI ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3145, 3926, 4274, 4337
Bst6I CTCTTC 4 cut(s) 1139, 2446, 2545, 2874
BstAFI CTTAAG 1 cut(s) 3416
BstAPI GCANNNNNTGC 3 cut(s) 668, 1713, 2693
BstDSI CCRYGG 2 cut(s) 4025, 4370
BstEII GGTNACC 1 cut(s) 3920
BstENI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3939, 4104
BstFNI CGCG 1 cut(s) 1488
BstMAI GTCTC 4 cut(s) 2078, 2542, 2919, 3958
BstMCI CGRYCG 1 cut(s) 767
BstNI CCWGG 6 cut(s) 1453, 1670, 2243, 3135, 4101, 4732
BstNSI RCATGY 3 cut(s) 577, 666, 3236
BstPI GGTNACC 1 cut(s) 3920
BstSCI CCNGG 9 cut(s) 1268, 1269, 1451, 1668, 2241, 2719, 3133, 4099, 4730
BstSFI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 2990, 4117
BstSLI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4335
BstUI CGCG 1 cut(s) 1488
BstV1I GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3637, 4271, 4485
BstV2I GAAGAC 2 cut(s) 2475, 4140
BstX2I RGATCY 7 cut(s) 4, 2119, 3130, 3247, 3463, 3775, 4125
BstYI RGATCY 7 cut(s) 4, 2119, 3130, 3247, 3463, 3775, 4125
BstZ17I GTATAC 3 cut(s) 163, 3958, 3984
Bsu15I ATCGAT 1 cut(s) 1937
BsuI GTATCC 5 cut(s) 106, 369, 2050, 3737, 4459
BsuTUI ATCGAT 1 cut(s) 1937
BtgI CCRYGG 2 cut(s) 4025, 4370
BtgZI GCGATG 1 cut(s) 1503
BtrI CACGTC 2 cut(s) 1619, 2552
BtsI GCAGTG 3 cut(s) 1189, 1501, 1586
BtuMI TCGCGA 1 cut(s) 1488
BveI ACCTGC 2 cut(s) 567, 1487
CaiI CAGNNNCTG 5 cut(s) 1713, 3134, 3272, 3443, 3716
CciI TCATGA 4 cut(s) 2881, 3111, 3352, 4351
Cfr10I RCCGGY 1 cut(s) 1757
Cfr9I CCCGGG 1 cut(s) 1269
ClaI ATCGAT 1 cut(s) 1937
Csp6I GTAC 5 cut(s) 1745, 1943, 3500, 4231, 4606
CspAI ACCGGT 1 cut(s) 1757
CspCI CAANNNNNGTGG 2 cut(s) 1210, 1245
CviQI GTAC 5 cut(s) 1745, 1943, 3500, 4231, 4606
DraI TTTAAA 1 cut(s) 3489
EaeI YGGCCR 2 cut(s) 1342, 2626
Eam1104I CTCTTC 4 cut(s) 1139, 2446, 2545, 2874
EarI CTCTTC 4 cut(s) 1139, 2446, 2545, 2874
EciI GGCGGA 1 cut(s) 4320
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 5 cut(s) 8, 1016, 3786, 4016, 4430
Eco147I AGGCCT 1 cut(s) 4080
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 2 cut(s) 959, 1855
Eco47I GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 5 cut(s) 3312, 3480, 3666, 3791, 4589
Eco88I CYCGRG 2 cut(s) 1269, 1605
Eco91I GGTNACC 1 cut(s) 3920
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3939, 4104
EcoO109I RGGNCCY 2 cut(s) 1086, 4013
EcoO65I GGTNACC 1 cut(s) 3920
EcoRI GAATTC 1 cut(s) 2354
EcoRII CCWGG 6 cut(s) 1451, 1668, 2241, 3133, 4099, 4730
EcoRV GATATC 2 cut(s) 959, 1855
EcoT14I CCWWGG 5 cut(s) 8, 1016, 3786, 4016, 4430
EcoT22I ATGCAT 2 cut(s) 1771, 3476
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 5 cut(s) 8, 1016, 3786, 4016, 4430
Esp3I CGTCTC 1 cut(s) 2542
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 4517, 4549
FaqI GGGAC 5 cut(s) 455, 1075, 1945, 1981, 4304
FauI CCCGC 2 cut(s) 2046, 4255
FauNDI CATATG 1 cut(s) 1847
FbaI TGATCA 4 cut(s) 2017, 2077, 3616, 4477
FblI GTMKAC 3 cut(s) 162, 3957, 3983
FriOI GRGCYC 1 cut(s) 249
GsaI CCCAGC 3 cut(s) 1827, 3156, 3276
GsuI CTGGAG 3 cut(s) 156, 1008, 2436
HapII CCGG 5 cut(s) 1270, 1758, 2720, 3481, 4699
HincII GTYRAC 2 cut(s) 1651, 3852
HindII GTYRAC 2 cut(s) 1651, 3852
HindIII AAGCTT 3 cut(s) 389, 2824, 2951
HpaI GTTAAC 1 cut(s) 1651
HpaII CCGG 5 cut(s) 1270, 1758, 2720, 3481, 4699
HphI GGTGA 7 cut(s) 88, 538, 875, 1997, 2585, 3956, 4675
Hpy99I CGWCG 2 cut(s) 2109, 2967
HpyCH4III ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3145, 3926, 4274, 4337
HpyCH4IV ACGT 6 cut(s) 1618, 1896, 2551, 2663, 3362, 4695
HpySE526I ACGT 6 cut(s) 1618, 1896, 2551, 2663, 3362, 4695
Ksp22I TGATCA 4 cut(s) 2017, 2077, 3616, 4477
KspAI GTTAAC 1 cut(s) 1651
LguI GCTCTTC 2 cut(s) 1139, 2446
LmnI GCTCC 9 cut(s) 252, 989, 1665, 2341, 2455, 2964, 3062, 4307, 4650
Lsp1109I GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3637, 4271, 4485
MaeII ACGT 6 cut(s) 1618, 1896, 2551, 2663, 3362, 4695
MbiI CCGCTC 1 cut(s) 2959
MfeI CAATTG 2 cut(s) 3258, 4601
MflI RGATCY 7 cut(s) 4, 2119, 3130, 3247, 3463, 3775, 4125
MhlI GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4335
MlsI TGGCCA 1 cut(s) 1344
MluNI TGGCCA 1 cut(s) 1344
MmeI TCCRAC 7 cut(s) 182, 421, 1870, 2461, 3846, 3859, 4570
Mox20I TGGCCA 1 cut(s) 1344
Mph1103I ATGCAT 2 cut(s) 1771, 3476
MroXI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3886
MscI TGGCCA 1 cut(s) 1344
MslI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 1658, 3390, 3624
Msp20I TGGCCA 1 cut(s) 1344
MspA1I CMGCKG 4 cut(s) 464, 2179, 3272, 4262
MspCI CTTAAG 1 cut(s) 3416
MspI CCGG 5 cut(s) 1270, 1758, 2720, 3481, 4699
MspR9I CCNGG 9 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3135, 4101, 4732
MunI CAATTG 2 cut(s) 3258, 4601
Mva1269I GAATGC 3 cut(s) 463, 1729, 2698
MvaI CCWGG 6 cut(s) 1453, 1670, 2243, 3135, 4101, 4732
MvnI CGCG 1 cut(s) 1488
NciI CCSGG 3 cut(s) 1270, 1271, 2721
NdeI CATATG 1 cut(s) 1847
NheI GCTAGC 1 cut(s) 842
NmuCI GTSAC 6 cut(s) 119, 863, 994, 1243, 1460, 2389
NruI TCGCGA 1 cut(s) 1488
NsiI ATGCAT 2 cut(s) 1771, 3476
NspI RCATGY 3 cut(s) 577, 666, 3236
OliI CACNNNNGTG 1 cut(s) 902
PaeI GCATGC 2 cut(s) 666, 3236
PaeR7I CTCGAG 1 cut(s) 1605
PagI TCATGA 4 cut(s) 2881, 3111, 3352, 4351
PceI AGGCCT 1 cut(s) 4080
PciSI GCTCTTC 2 cut(s) 1139, 2446
PcsI WCGNNNNNNNCGW 3 cut(s) 940, 1552, 2695
PctI GAATGC 3 cut(s) 463, 1729, 2698
PdmI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3886
PflFI GACNNNGTC 1 cut(s) 3969
PflMI CCANNNNNTGG 4 cut(s) 1506, 2624, 3272, 4458
PfoI TCCNGGA 1 cut(s) 2719
PinAI ACCGGT 1 cut(s) 1757
PpuMI RGGWCCY 1 cut(s) 1086
PshBI ATTAAT 1 cut(s) 3042
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 1086
Psp6I CCWGG 6 cut(s) 1451, 1668, 2241, 3133, 4099, 4730
PspEI GGTNACC 1 cut(s) 3920
PspFI CCCAGC 3 cut(s) 1823, 3152, 3272
PspGI CCWGG 6 cut(s) 1451, 1668, 2241, 3133, 4099, 4730
PspPPI RGGWCCY 1 cut(s) 1086
PspXI VCTCGAGB 1 cut(s) 1605
PsrI GAACNNNNNNTAC 2 cut(s) 1302, 1334
PstI CTGCAG 2 cut(s) 978, 2994
PstNI CAGNNNCTG 5 cut(s) 1713, 3134, 3272, 3443, 3716
PsuI RGATCY 7 cut(s) 4, 2119, 3130, 3247, 3463, 3775, 4125
PsyI GACNNNGTC 1 cut(s) 3969
PvuII CAGCTG 1 cut(s) 464
RruI TCGCGA 1 cut(s) 1488
RsaI GTAC 5 cut(s) 1746, 1944, 3501, 4232, 4607
RsaNI GTAC 5 cut(s) 1745, 1943, 3500, 4231, 4606
RseI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 1658, 3390, 3624
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 2 cut(s) 1139, 2446
ScrFI CCNGG 9 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3135, 4101, 4732
SduI GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4335
SfcI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 2990, 4117
SfiI GGCCNNNNNGGCC 1 cut(s) 1194
Sfr274I CTCGAG 1 cut(s) 1605
SinI GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
SlaI CTCGAG 1 cut(s) 1605
SmaI CCCGGG 1 cut(s) 1271
SmiI ATTTAAAT 1 cut(s) 3489
SmiMI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 1658, 3390, 3624
SmlI CTYRAG 4 cut(s) 1605, 3416, 3961, 4082
SmoI CTYRAG 4 cut(s) 1605, 3416, 3961, 4082
SphI GCATGC 2 cut(s) 666, 3236
SseBI AGGCCT 1 cut(s) 4080
SspI AATATT 3 cut(s) 1110, 1432, 2428
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 4080
StyD4I CCNGG 9 cut(s) 1268, 1269, 1451, 1668, 2241, 2719, 3133, 4099, 4730
StyI CCWWGG 5 cut(s) 8, 1016, 3786, 4016, 4430
SwaI ATTTAAAT 1 cut(s) 3489
TaaI ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3145, 3926, 4274, 4337
TaiI ACGT 6 cut(s) 1621, 1899, 2554, 2666, 3365, 4698
TaqI TCGA 7 cut(s) 934, 1069, 1606, 1937, 2104, 2698, 3737
TaqII GACCGA 2 cut(s) 753, 3014
TatI WGTACW 2 cut(s) 1744, 1942
TauI GCSGC 5 cut(s) 547, 2182, 2185, 3272, 4241
TseFI GTSAC 6 cut(s) 119, 863, 994, 1243, 1460, 2389
TseI GCWGC 7 cut(s) 461, 1691, 2487, 2684, 3650, 4259, 4498
Tsp45I GTSAC 6 cut(s) 119, 863, 994, 1243, 1460, 2389
TspMI CCCGGG 1 cut(s) 1269
Tth111I GACNNNGTC 1 cut(s) 3969
Van91I CCANNNNNTGG 4 cut(s) 1506, 2624, 3272, 4458
Vha464I CTTAAG 1 cut(s) 3416
VneI GTGCAC 3 cut(s) 16, 642, 4331
VpaK11BI GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
VspI ATTAAT 1 cut(s) 3042
XagI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3939, 4104
XbaI TCTAGA 1 cut(s) 3008
XceI RCATGY 3 cut(s) 577, 666, 3236
XcmI CCANNNNNNNNNTGG 1 cut(s) 2286
XhoI CTCGAG 1 cut(s) 1605
XmaI CCCGGG 1 cut(s) 1269
XmiI GTMKAC 3 cut(s) 162, 3957, 3983
XmnI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3886
Zsp2I ATGCAT 2 cut(s) 1771, 3476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.