pycom11g27460

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003305
Physical Location & Seq
Forward (+)
29729368 .. 29729703
336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g27460.1

Sequence Viewer

Length: 336 bp
ATGGATCCTCGGAAGTGTACTTTGTCTGGTGGTGCAACTTCTCTTGTTATGGCACCTTCAAGCATTTTAAATAAGTTGAATGAGAAGGCTCAGTTTGAAAAAGAAGAGAGGGATACAGGTCATGCTATTGAGGCTGGAGTCGATATAGACATTAGAGAGGTTTATTTTTTGATTATGCACTTTCTGTCACTTGGGCCATGCCTGAGGACTTTCAAACAGTTTGGGAATGATCGATTCTGGAACATCAGCTTCTACCTAGAAGGTATCATGCTTGGTTTTCAAGGAGCGGAATTGGAAGTGACAATAGTAATGAGGATGCTACATCCTTCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

5.75

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRWD1_N PF25437 42 - 76 2e-10 BRWD1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccBSI CCGCTC 1 cut(s) 287
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 19
AgsI TTSAA 5 cut(s) 60, 79, 98, 214, 281
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 194
AxyI CCTNAGG 1 cut(s) 203
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 52
BciVI GTATCC 1 cut(s) 106
BfaI CTAG 1 cut(s) 257
BfuI GTATCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 6, 54
BmsI GCATC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 8
Bse21I CCTNAGG 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 321, 322
BseMII CTCAG 2 cut(s) 104, 194
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 232
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 4, 229
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 103, 195
BspDI ATCGAT 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 6, 54
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 2 cut(s) 4, 229
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 90, 203
BstF5I GGATG 2 cut(s) 321, 322
BstKTI GATC 2 cut(s) 7, 232
BstMBI GATC 2 cut(s) 4, 229
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 203
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 232
BtsCI GGATG 2 cut(s) 321, 322
Cfr13I GGNCC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 232
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 122, 198, 268
CviJI RGCY 4 cut(s) 89, 134, 196, 249
CviKI_1 RGCY 4 cut(s) 89, 134, 196, 249
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 2 cut(s) 90, 203
DpnI GATC 2 cut(s) 6, 231
DpnII GATC 2 cut(s) 4, 229
DraI TTTAAA 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 203
FaeI CATG 3 cut(s) 125, 201, 271
FaiI YATR 6 cut(s) 50, 123, 146, 176, 199, 269
FatI CATG 3 cut(s) 121, 197, 267
FokI GGATG 2 cut(s) 309, 328
FspBI CTAG 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 3 cut(s) 125, 201, 271
HinfI GANTC 2 cut(s) 138, 234
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 4 cut(s) 66, 79, 254, 336
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 35, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 90, 203
Hsp92II CATG 3 cut(s) 125, 201, 271
Kzo9I GATC 2 cut(s) 4, 229
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 5 cut(s) 12, 102, 120, 215, 223
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 186, 298
MalI GATC 2 cut(s) 6, 231
MbiI CCGCTC 1 cut(s) 287
MboI GATC 2 cut(s) 4, 229
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 4
MluCI AATT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 6 cut(s) 18, 102, 124, 151, 198, 306
MseI TTAA 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 4, 229
NlaIII CATG 3 cut(s) 125, 201, 271
NlaIV GGNNCC 2 cut(s) 6, 54
NmuCI GTSAC 2 cut(s) 186, 298
PfeI GAWTC 1 cut(s) 234
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 6, 54
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 68
Sau3AI GATC 2 cut(s) 4, 229
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 147
SetI ASST 6 cut(s) 58, 121, 162, 251, 258, 265
SfaNI GCATC 1 cut(s) 306
Sse9I AATT 1 cut(s) 290
SsiI CCGC 1 cut(s) 287
SspMI CTAG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 141, 232
TasI AATT 1 cut(s) 290
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseFI GTSAC 2 cut(s) 186, 298
Tsp45I GTSAC 2 cut(s) 186, 298
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.