MD03G1295600.v1.1

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0003305
Physical Location & Seq
Forward (+)
37148216 .. 37155877
7662 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1295600.v1.1.491

Sequence Viewer

Length: 4080 bp
ATGGATATCAATGCCAACTATTGTCGTGTTTATATGCTTCGTCGACATTTGGAAGGAGACATTACTGACTTGGCTGTAAGTTCGAACAATGCTTTGGTGGCATCTGCTTCAAATGACTTTTCCATTCGAGTTTGGCGTTTGCCAGATGGATTTCCAATTTCAGTTCTTCAGGGGCATACTGGGGCTGTGACTGCTATTGCTTTTAGTCCCAGGCTTAGTGCTGTTTACCAACTTCTATCGTCATCAGATGATGGGACTTGTCGAATCTGGGATGCTAGGTCCTCCCAATGCCCGCTGCGAATATACATGCCAAAACCTTCAGAGACTTCAACTGGGAAGAGCAATGCTATTACAATCACTGGATCCTCCTCGAGCAATGGTCCACAGAGCCATCAAATACTTTGTTGTGCTTACAATGCCAATGGGACTGTTTTTGTCACTGGTAGCTCTGACACTTTTGCAAGGGTCTGGAATGCTTTAAAATCTAATACTGATAACTCAGAACAACCAATACATGAGATGGATGTACTGGCGGGCCATGAGAATGACGTGAATTATGTCCAATTCAGTGGTTGTGTCATTCCTTCAAAGTCTTCATTTTCTGACTCGGTCAAGGAGGAGACTAATGGGAAGTTCAAAAATTCCTGGTTTTGTCACAACAACATAGTTACCTGCTCTCGTGATGGCAGTGCCATTATATGGGTTCCAAGATCACATAAATTCCATGGAAAAGTTGGACGTTGGACACGTGCATATCATCTAAAAGTTCCACCTCCCCCACTGCCTCCTCAGCCTCCTCGAGGAGGCCCACGTCAAAGATTTCTTCCCACCCCTCGTGGTGTTAACATGATTGTGTGGAGCCTGGATAACCGCTTTGTGCTTGCAGCTATCATGGATTGCAGAATTTGTGTTTGGAATGCTGTTGATGGTAGCTTAGTACATTCTTTAACTGGTCACACTGCATCGTCTTATGTTTTGGATGTTCATCCCTTCAATCCTCGAATTGCTATGAGTGCTGGGTATGATGGGCAAACAATAGTTTGGGATATATGGGAGGGCGTGCCTATTAAGATATATGAACTTGGACACGTAAAGTTGGTTGATGGGAAGTTTTCGGCGGATGGTACATCAATAGTACTTTCAGACGATGTTGGCCAAATATATTTAATAAACACAGGTGAAGGTGAGTCTCAAAAAGATGCTGAATATGATCAGTTCTTCCTTGGGGATTATCGCCCCCTTGCACGGGATGAGTTTGGATATCTTATTGATCAGGAGACACAACTTTCCACTTACCGGAGGAATCTTCAAGATCCTCTATGTGATTCAAGTATGATACCATACCCCGAACCTTATCAGAGTACATACCAGCAACGAAGACTTGGTGCTCTGGGCATGGAATGGCGTCCATCATCCATGAAATTTTCTGTTGGTGTGGATATCAATACAGGCCAAGAATATATGATGCCTCCTTTGCCAGATTTGGAGAGAATGATCGAACCACTACCAGATTTTATTGATGCCATGTTATGGGAACCAGAAAATGAGGTTGTAAGTGAAGATACTGATTCGGAGTATAATGTTACTGATGAAAATTCCAGTGAAGGGGAGAAAGGAAATATTAGCACCAGTTCTTCTAGTGATCCAGACTGCAGCGAAGAAGACAGTGAAGCTGGATGCAGTCATATTCGTCGATCAAGGAGAAAAAGACCAAGGGTTGAGTCTTCTGAGAGGCGTGTCAAGAAAAGGAGAGTGGGTGAGCATGATCGCATTATATCTGGGATTAAAAGAACTAAAAATTCAAAAGGTGGCCAGAAAGTTTCAAAGAGGAAGTCTTCTAAAGCAAAGACATTGAGATCCCAGCGAGTAGCAGCACGCAATGCTCGAACTGTGTTTTCTCAGAACCCTGGAACATCTACAGAAGGAGAAGATGATTGGGAAGATGATTCATCTAATAGTGAGTCTCTTCAGCAAGAATTCCACACTCAAAGTGATGATGGGGACTTCCAGATAATGCAACAAAACCATACTAAAGAAGAACCATCTCGACATGGGTTTATCAATATAGCGAAGCCACGTGTAGTTTGTTCGTCTCAGTCAAACGTCAGAAGCATGCCGAAATTGGTTTTTAAGATTAAGAAGCAAGAGGCTCCAAGGGATGTAAAACTCAAAGATAATAATCAGGCTGATTTGGTGTCTCCATCTTCTAGATATCAAGATATCACTCCAGATAACAGGATTATTAACAGCTCTGTGGATCCAGATTCCTTTTCGGTGGATGTGGTTGACCTAAAGTTTTCAAGAAATCTCATAGCCAATGATTTGACAGATACTGGGGAAACTGTAAAGACAGAGAATTCTTTGGAAGCATCCACAAGTTACCAGGATAGCAGAGTCAGATTGGAAGCAGCTACTGGGTCGCTTGCTAGTTTTAATGTCCATATAGAAGAGATGAATAATGTCCATCGGGATGAGGAACATACTGGAACACGTGCATTTGAAGATCTGGATGGTCTCAAAAGTAGAGAGCTTTCTCATACTGAAGAGGCCCTTGTATCTTCATCATTTGATTCCCCCGCTTTGGGCGAGCACAAACAAAAAGGAATTGAGGGTTCTTCGGAGATAGAGGAGTTTGTTACAAGAAAGCACTCTGGTGATTATGCTTCTCTTAAATTTCCTGCACAAAACTCCACAAGTTCTAGAGATTTAATCCCCAACGATTCTTCAAGCATGGATCCAAATTCAAATTTTGGGGTAAGGAAAGTGGGTGGAGGTGCTGGCAGATCAACTTCTTTGAAGTTTGTTTGCAAGCACAGGACTAATTCAGAAGGTTCTGGTGGTAATGTCAAAGAATATGCAACAAATATCAACGACCATCATGATTCAGGAATGGATCTCCCCGCTGCTGCAACCAATGCTATACGCGGAACAAGAACCTTTAAGATCAAAGCAACTTCACGGAAGGTGGACTCTCTGAGCTGTAGCCCTAAGTTGAGATGGGGCCACCAAACATTGGGGACATCAAAGGATGCAGAAGACTCCTGTGCTAAATTGTGTGACCAGATTCATCAAAGACCAAAGTCTACGAGAAGTCATCAGGGTTCATGTAATGACTATGGCCAAAGTTCTTCAACCCGAAGCATGTTAGTTAACCCCGCTGGAAAGTTGCCATGGTTGATGTTGTCAAAACATGAGGATGGTTACCGTTATATTCCTCAGCTAGGTGATGAAGTTGTATACCTGAGACAGGGCCATCAAGAGTATCTAAAACTAGTCAAGAATTCAGAGGAGGGTCCTTGGGGTCCTTGGGAATCAATTAAGGAAAACATCAAAGTTGCGGAAATTTGCAAGGTTGAAAGCCTCGATTATGCTTCACTGCCTGGTTCGGGGGAGAGTTGCTGTAAAATCAAACTTAGATTTGTAGACCCTTCTTCTGCTATCCTTGGTAAAGCATTGAAGTTGACTTTGCCTGAAATTGATTTTAATGATTTCATTGTTGAGAAAACGTGGTATGATGCTTCTATTGGAAGAAACTGGACCACTGGGGAGGAATGCGCAGTTTGGTGGAGGGATTCAATTTCAGATGAAGGTGGGACTTGGTGGGTAGGTCGAATTGTTCGGTGCCAGGCCAAGTCACATGAGTTTCCCGATAGCCCTTGGTTAAGATATGAGGTTCGGTATGAGAATGATGATGAAACCCATTTGCATTGTCCTTGGGAATTGCGTGGACCGTCCATAGTAGATGATCCATCCTCATGCGAACAGCCCCATATTGATTCTGAAAGCAAAGAGAAGCTTCTGTGTATTTTTTCTAACTTACAACAGAAGGACTTGCAAACAATCCAACAATTGAATCAAGCTGTTCAGAAGGCGGATTTCTGCAACAGCTTTCCTGTGCAATTGTACCCTGAACTAATCCAGTCGAGGTTAGAGAACGACTATTATAGAAGCTTGGAAGCTGTGAAGCATGATATAATGGTTATGATGTCAAATGCCCAGCATTACTTCAAGAGAAATGAATTGCAAGCCCGGATTAAGCACATCTCGAAAAGGTTTAAGAAGAAACTGTCAAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1360

Amino Acids

152.53

Weight (kDa)

6.05

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 6 - 104 1.2e-08 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 12 - 98 2.6e-14 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 12 - 97 8.7e-10 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 17 - 101 6.5e-07 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 18 - 100 2.7e-12 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 18 - 190 2.4e-13 Prp19 WD40 domain
WD40_Gbeta PF25391 18 - 184 5.5e-08 G protein beta WD-40 repeat protein
WD40_WDHD1_1st PF24817 19 - 108 3.6e-13 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 20 - 100 9.2e-12 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 21 - 94 1.9e-06 WDR3 second beta-propeller domain
WD40 PF00400 52 - 91 4.6e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 278 - 397 5.6e-11 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 281 - 404 1.7e-12 THOC3 beta-propeller domain
BRWD_AD PF25313 1068 - 1243 7.6e-59 BRWD/PHIP ancillary domain-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 798
Acc16I TGCGCA 1 cut(s) 3556
Acc36I ACCTGC 1 cut(s) 680
AccB1I GGYRCC 1 cut(s) 3621
AccB7I CCANNNNNTGG 3 cut(s) 699, 1530, 3013
AccI GTMKAC 4 cut(s) 43, 3083, 3237, 3423
AccII CGCG 1 cut(s) 2925
AcoI YGGCCR 3 cut(s) 1153, 1810, 3118
AcuI CTGAAG 4 cut(s) 152, 303, 1952, 2562
AcvI CACGTG 3 cut(s) 749, 2078, 2492
AcyI GRCGYC 1 cut(s) 1405
AfaI GTAC 6 cut(s) 528, 939, 1126, 1137, 1363, 3905
AflIII ACRYGT 4 cut(s) 746, 1087, 2077, 2489
AhlI ACTAGT 1 cut(s) 3271
AjiI CACGTC 2 cut(s) 550, 812
AjnI CCWGG 7 cut(s) 209, 644, 861, 1906, 2382, 3379, 3624
AjuI GAANNNNNNNTTGG 4 cut(s) 77, 109, 895, 927
AleI CACNNNNGTG 1 cut(s) 2652
Alw21I GWGCWC 2 cut(s) 1390, 2592
AlwNI CAGNNNCTG 2 cut(s) 2333, 2414
Ama87I CYCGRG 2 cut(s) 370, 798
ApeKI GCWGC 7 cut(s) 295, 884, 1653, 1871, 2408, 2903, 2906
ArsI GACNNNNNNTTYG 2 cut(s) 1817, 1849
AspLEI GCGC 1 cut(s) 3557
AsuC2I CCSGG 1 cut(s) 4030
AsuHPI GGTGA 5 cut(s) 1190, 1196, 1769, 2666, 3236
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 2 cut(s) 370, 798
AvaII GGWCC 6 cut(s) 279, 380, 3293, 3302, 3537, 3728
BalI TGGCCA 3 cut(s) 1155, 1812, 3120
BamHI GGATCC 3 cut(s) 362, 2257, 2734
BanI GGYRCC 1 cut(s) 3621
BauI CACGAG 2 cut(s) 678, 834
BbrPI CACGTG 3 cut(s) 749, 2078, 2492
BbsI GAAGAC 6 cut(s) 585, 1384, 1668, 1716, 1827, 3042
Bbv12I GWGCWC 2 cut(s) 1390, 2592
BbvCI CCTCAGC 2 cut(s) 789, 3216
BbvI GCAGC 7 cut(s) 282, 896, 1665, 1883, 2420, 2890, 2893
BciT130I CCWGG 7 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626
BclI TGATCA 2 cut(s) 1210, 1270
BcnI CCSGG 1 cut(s) 4030
BcuI ACTAGT 1 cut(s) 3271
BfaI CTAG 7 cut(s) 276, 1638, 2208, 2427, 2700, 3221, 3272
BfmI CTRYAG 3 cut(s) 1651, 1917, 2980
BfuAI ACCTGC 1 cut(s) 680
BglII AGATCT 1 cut(s) 2503
BisI GCNGC 7 cut(s) 296, 885, 1654, 1872, 2409, 2904, 2907
BlsI GCNGC 7 cut(s) 297, 886, 1655, 1873, 2410, 2905, 2908
BmcAI AGTACT 1 cut(s) 1137
Bme1390I CCNGG 8 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626, 4030
Bme18I GGWCC 6 cut(s) 279, 380, 3293, 3302, 3537, 3728
BmeT110I CYCGRG 2 cut(s) 370, 798
BmgBI CACGTC 2 cut(s) 550, 812
BmrFI CCNGG 8 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626, 4030
BmrI ACTGGG 5 cut(s) 189, 342, 2343, 2424, 3552
BmuI ACTGGG 5 cut(s) 189, 342, 2343, 2424, 3552
BoxI GACNNNNGTC 1 cut(s) 3079
BpiI GAAGAC 6 cut(s) 585, 1384, 1668, 1716, 1827, 3042
BpmI CTGGAG 1 cut(s) 2211
Bpu10I CCTNAGC 2 cut(s) 789, 3216
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 4030
BsaAI YACGTR 4 cut(s) 749, 1090, 2078, 2492
BsaBI GATNNNNATC 2 cut(s) 984, 2178
BsaHI GRCGYC 1 cut(s) 1405
BsaI GGTCTC 1 cut(s) 2519
BsaWI WCCGGW 1 cut(s) 1296
BsaXI ACNNNNNCTCC 2 cut(s) 1741, 1771
Bse3DI GCAATG 3 cut(s) 349, 382, 1885
Bse8I GATNNNNATC 2 cut(s) 984, 2178
BseBI CCWGG 7 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626
BseJI GATNNNNATC 2 cut(s) 984, 2178
BseMI GCAATG 3 cut(s) 349, 382, 1885
BseMII CTCAG 8 cut(s) 513, 803, 1719, 1913, 2108, 2966, 3230, 3233
BseRI GAGGAG 7 cut(s) 358, 632, 777, 786, 816, 2642, 3302
BseXI GCAGC 7 cut(s) 282, 896, 1665, 1883, 2420, 2890, 2893
BseYI CCCAGC 3 cut(s) 1016, 1860, 3996
BsgI GTGCAG 1 cut(s) 2664
Bsh1236I CGCG 1 cut(s) 2925
BshNI GGYRCC 1 cut(s) 3621
BsiHKAI GWGCWC 2 cut(s) 1390, 2592
BsiHKCI CYCGRG 2 cut(s) 370, 798
BsiSI CCGG 2 cut(s) 1297, 4030
BslFI GGGAC 6 cut(s) 192, 268, 439, 2015, 3031, 3607
BsmBI CGTCTC 1 cut(s) 2097
BsmFI GGGAC 6 cut(s) 192, 268, 439, 2015, 3031, 3607
BsmI GAATGC 3 cut(s) 478, 922, 3557
Bso31I GGTCTC 1 cut(s) 2519
BsoBI CYCGRG 2 cut(s) 370, 798
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 1390, 2592
Bsp19I CCATGG 2 cut(s) 724, 3170
BspCNI CTCAG 8 cut(s) 512, 802, 1720, 1912, 2107, 2967, 3229, 3234
BspFNI CGCG 1 cut(s) 2925
BspHI TCATGA 1 cut(s) 2878
BspMAI CTGCAG 1 cut(s) 1655
BspMI ACCTGC 1 cut(s) 680
BspQI GCTCTTC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 3621
BspTNI GGTCTC 1 cut(s) 2519
BsrDI GCAATG 3 cut(s) 349, 382, 1885
BssNAI GTATAC 1 cut(s) 3238
BssNI GRCGYC 1 cut(s) 1405
BssSI CACGAG 2 cut(s) 678, 834
Bst1107I GTATAC 1 cut(s) 3238
Bst2BI CACGAG 2 cut(s) 678, 834
Bst2UI CCWGG 7 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626
Bst4CI ACNGT 7 cut(s) 430, 1667, 1891, 2344, 3206, 3732, 4068
Bst6I CTCTTC 4 cut(s) 332, 1971, 2442, 2538
BstACI GRCGYC 1 cut(s) 1405
BstAPI GCANNNNNTGC 2 cut(s) 1880, 2915
BstBAI YACGTR 4 cut(s) 749, 1090, 2078, 2492
BstBI TTCGAA 1 cut(s) 83
BstDSI CCRYGG 2 cut(s) 724, 3170
BstEII GGTNACC 1 cut(s) 3200
BstENI CCTNNNNNAGG 4 cut(s) 798, 801, 3219, 3245
BstFNI CGCG 1 cut(s) 2925
BstHHI GCGC 1 cut(s) 3557
BstMWI GCNNNNNNNGC 8 cut(s) 98, 191, 416, 790, 1013, 1474, 1880, 2915
BstNI CCWGG 7 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626
BstNSI RCATGY 3 cut(s) 310, 2116, 3145
BstPAI GACNNNNGTC 1 cut(s) 3079
BstPI GGTNACC 1 cut(s) 3200
BstSCI CCNGG 8 cut(s) 209, 644, 861, 1906, 2382, 3379, 3624, 4028
BstSFI CTRYAG 3 cut(s) 1651, 1917, 2980
BstUI CGCG 1 cut(s) 2925
BstV1I GCAGC 7 cut(s) 282, 896, 1665, 1883, 2420, 2890, 2893
BstV2I GAAGAC 6 cut(s) 585, 1384, 1668, 1716, 1827, 3042
BstX2I RGATCY 7 cut(s) 362, 1312, 1856, 2257, 2503, 2734, 2893
BstXI CCANNNNNNTGG 1 cut(s) 569
BstYI RGATCY 7 cut(s) 362, 1312, 1856, 2257, 2503, 2734, 2893
BstZ17I GTATAC 1 cut(s) 3238
BtgI CCRYGG 2 cut(s) 724, 3170
BtrI CACGTC 2 cut(s) 550, 812
BtsI GCAGTG 4 cut(s) 694, 779, 957, 3374
BveI ACCTGC 1 cut(s) 680
CaiI CAGNNNCTG 2 cut(s) 2333, 2414
CciI TCATGA 1 cut(s) 2878
CfoI GCGC 1 cut(s) 3557
CseI GACGC 1 cut(s) 1394
Csp6I GTAC 6 cut(s) 527, 938, 1125, 1136, 1362, 3904
CviQI GTAC 6 cut(s) 527, 938, 1125, 1136, 1362, 3904
DraI TTTAAA 1 cut(s) 480
EaeI YGGCCR 3 cut(s) 1153, 1810, 3118
Eam1104I CTCTTC 4 cut(s) 332, 1971, 2442, 2538
EarI CTCTTC 4 cut(s) 332, 1971, 2442, 2538
EciI GGCGGA 2 cut(s) 1133, 3887
Eco31I GGTCTC 1 cut(s) 2519
Eco32I GATATC 5 cut(s) 7, 1262, 1441, 2213, 2221
Eco47I GGWCC 6 cut(s) 279, 380, 3293, 3302, 3537, 3728
Eco57I CTGAAG 4 cut(s) 152, 303, 1952, 2562
Eco72I CACGTG 3 cut(s) 749, 2078, 2492
Eco88I CYCGRG 2 cut(s) 370, 798
Eco91I GGTNACC 1 cut(s) 3200
EcoNI CCTNNNNNAGG 4 cut(s) 798, 801, 3219, 3245
EcoO109I RGGNCCY 4 cut(s) 279, 2548, 3293, 3302
EcoO65I GGTNACC 1 cut(s) 3200
EcoRI GAATTC 3 cut(s) 1976, 2356, 3280
EcoRII CCWGG 7 cut(s) 209, 644, 861, 1906, 2382, 3379, 3624
EcoRV GATATC 5 cut(s) 7, 1262, 1441, 2213, 2221
Esp3I CGTCTC 1 cut(s) 2097
FalI AAGNNNNNCTT 4 cut(s) 2535, 2567, 3780, 3812
FaqI GGGAC 6 cut(s) 192, 268, 439, 2015, 3031, 3607
FauI CCCGC 5 cut(s) 300, 526, 2584, 2908, 3163
FbaI TGATCA 2 cut(s) 1210, 1270
FblI GTMKAC 4 cut(s) 43, 3083, 3237, 3423
Fnu4HI GCNGC 7 cut(s) 296, 885, 1654, 1872, 2409, 2904, 2907
Fsp4HI GCNGC 7 cut(s) 296, 885, 1654, 1872, 2409, 2904, 2907
FspBI CTAG 7 cut(s) 276, 1638, 2208, 2427, 2700, 3221, 3272
FspI TGCGCA 1 cut(s) 3556
GlaI GCGC 1 cut(s) 3556
GluI GCNGC 7 cut(s) 296, 885, 1654, 1872, 2409, 2904, 2907
GsaI CCCAGC 3 cut(s) 1020, 1864, 4000
GsuI CTGGAG 1 cut(s) 2211
HapII CCGG 2 cut(s) 1297, 4030
HgaI GACGC 1 cut(s) 1394
HhaI GCGC 1 cut(s) 3557
Hin1I GRCGYC 1 cut(s) 1405
Hin6I GCGC 1 cut(s) 3555
HinP1I GCGC 1 cut(s) 3555
HincII GTYRAC 5 cut(s) 44, 844, 2287, 3151, 3462
HindII GTYRAC 5 cut(s) 44, 844, 2287, 3151, 3462
HindIII AAGCTT 2 cut(s) 3794, 3949
HpaI GTTAAC 2 cut(s) 844, 3151
HpaII CCGG 2 cut(s) 1297, 4030
HphI GGTGA 5 cut(s) 1190, 1196, 1769, 2666, 3236
Hpy99I CGWCG 2 cut(s) 45, 1695
HpyCH4III ACNGT 7 cut(s) 430, 1667, 1891, 2344, 3206, 3732, 4068
HpyCH4IV ACGT 9 cut(s) 549, 739, 748, 811, 1089, 2077, 2103, 2491, 3506
HpyF10VI GCNNNNNNNGC 8 cut(s) 98, 191, 416, 790, 1013, 1474, 1880, 2915
HpySE526I ACGT 9 cut(s) 549, 739, 748, 811, 1089, 2077, 2103, 2491, 3506
Hsp92I GRCGYC 1 cut(s) 1405
HspAI GCGC 1 cut(s) 3555
Ksp22I TGATCA 2 cut(s) 1210, 1270
KspAI GTTAAC 2 cut(s) 844, 3151
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 2 cut(s) 858, 2155
Lsp1109I GCAGC 7 cut(s) 282, 896, 1665, 1883, 2420, 2890, 2893
MaeI CTAG 7 cut(s) 276, 1638, 2208, 2427, 2700, 3221, 3272
MaeII ACGT 9 cut(s) 549, 739, 748, 811, 1089, 2077, 2103, 2491, 3506
MfeI CAATTG 2 cut(s) 3848, 3899
MflI RGATCY 7 cut(s) 362, 1312, 1856, 2257, 2503, 2734, 2893
MhlI GDGCHC 2 cut(s) 1390, 2592
MlsI TGGCCA 3 cut(s) 1155, 1812, 3120
MluNI TGGCCA 3 cut(s) 1155, 1812, 3120
MlyI GAGTC 7 cut(s) 599, 1196, 1730, 1970, 2403, 2963, 3032
MmeI TCCRAC 3 cut(s) 715, 722, 3868
Mox20I TGGCCA 3 cut(s) 1155, 1812, 3120
MscI TGGCCA 3 cut(s) 1155, 1812, 3120
MslI CAYNNNNRTG 6 cut(s) 543, 851, 2469, 2652, 3195, 3754
Msp20I TGGCCA 3 cut(s) 1155, 1812, 3120
MspA1I CMGCKG 3 cut(s) 295, 2903, 3158
MspI CCGG 2 cut(s) 1297, 4030
MspR9I CCNGG 8 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626, 4030
MunI CAATTG 2 cut(s) 3848, 3899
Mva1269I GAATGC 3 cut(s) 478, 922, 3557
MvaI CCWGG 7 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626
MvnI CGCG 1 cut(s) 2925
MwoI GCNNNNNNNGC 8 cut(s) 98, 191, 416, 790, 1013, 1474, 1880, 2915
NciI CCSGG 1 cut(s) 4030
NcoI CCATGG 2 cut(s) 724, 3170
NmuCI GTSAC 6 cut(s) 187, 436, 653, 953, 3056, 3633
NsbI TGCGCA 1 cut(s) 3556
NspI RCATGY 3 cut(s) 310, 2116, 3145
NspV TTCGAA 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 2652
PaeI GCATGC 1 cut(s) 2116
PaeR7I CTCGAG 2 cut(s) 370, 798
PagI TCATGA 1 cut(s) 2878
PciSI GCTCTTC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 3 cut(s) 133, 745, 1882
PctI GAATGC 3 cut(s) 478, 922, 3557
PflFI GACNNNGTC 1 cut(s) 608
PflMI CCANNNNNTGG 3 cut(s) 699, 1530, 3013
PkrI GCNGC 7 cut(s) 297, 886, 1655, 1873, 2410, 2905, 2908
PleI GAGTC 7 cut(s) 599, 1195, 1729, 1969, 2402, 2963, 3032
PmaCI CACGTG 3 cut(s) 749, 2078, 2492
PmlI CACGTG 3 cut(s) 749, 2078, 2492
PpsI GAGTC 7 cut(s) 599, 1195, 1729, 1969, 2402, 2963, 3032
Ppu21I YACGTR 4 cut(s) 749, 1090, 2078, 2492
PpuMI RGGWCCY 3 cut(s) 279, 3293, 3302
PshAI GACNNNNGTC 1 cut(s) 3079
Psp5II RGGWCCY 3 cut(s) 279, 3293, 3302
Psp6I CCWGG 7 cut(s) 209, 644, 861, 1906, 2382, 3379, 3624
PspCI CACGTG 3 cut(s) 749, 2078, 2492
PspEI GGTNACC 1 cut(s) 3200
PspFI CCCAGC 3 cut(s) 1016, 1860, 3996
PspGI CCWGG 7 cut(s) 209, 644, 861, 1906, 2382, 3379, 3624
PspPPI RGGWCCY 3 cut(s) 279, 3293, 3302
PspXI VCTCGAGB 2 cut(s) 370, 798
PsrI GAACNNNNNNTAC 2 cut(s) 495, 527
PstI CTGCAG 1 cut(s) 1655
PstNI CAGNNNCTG 2 cut(s) 2333, 2414
PsuI RGATCY 7 cut(s) 362, 1312, 1856, 2257, 2503, 2734, 2893
PsyI GACNNNGTC 1 cut(s) 608
RsaI GTAC 6 cut(s) 528, 939, 1126, 1137, 1363, 3905
RsaNI GTAC 6 cut(s) 527, 938, 1125, 1136, 1362, 3904
RseI CAYNNNNRTG 6 cut(s) 543, 851, 2469, 2652, 3195, 3754
SalI GTCGAC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 332
SatI GCNGC 7 cut(s) 296, 885, 1654, 1872, 2409, 2904, 2907
ScaI AGTACT 1 cut(s) 1137
SchI GAGTC 7 cut(s) 599, 1196, 1730, 1970, 2403, 2963, 3032
ScrFI CCNGG 8 cut(s) 211, 646, 863, 1908, 2384, 3381, 3626, 4030
SduI GDGCHC 2 cut(s) 1390, 2592
SfcI CTRYAG 3 cut(s) 1651, 1917, 2980
Sfr274I CTCGAG 2 cut(s) 370, 798
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 6 cut(s) 279, 380, 3293, 3302, 3537, 3728
SlaI CTCGAG 2 cut(s) 370, 798
SmiMI CAYNNNNRTG 6 cut(s) 543, 851, 2469, 2652, 3195, 3754
SmlI CTYRAG 2 cut(s) 370, 798
SmoI CTYRAG 2 cut(s) 370, 798
SpeI ACTAGT 1 cut(s) 3271
SphI GCATGC 1 cut(s) 2116
SspI AATATT 1 cut(s) 1621
SspMI CTAG 7 cut(s) 276, 1638, 2208, 2427, 2700, 3221, 3272
StyD4I CCNGG 8 cut(s) 209, 644, 861, 1906, 2382, 3379, 3624, 4028
TaaI ACNGT 7 cut(s) 430, 1667, 1891, 2344, 3206, 3732, 4068
TaiI ACGT 9 cut(s) 552, 742, 751, 814, 1092, 2080, 2106, 2494, 3509
TaqII GACCGA 1 cut(s) 598
TatI WGTACW 4 cut(s) 526, 937, 1135, 1361
TseFI GTSAC 6 cut(s) 187, 436, 653, 953, 3056, 3633
TseI GCWGC 7 cut(s) 295, 884, 1653, 1871, 2408, 2903, 2906
Tsp45I GTSAC 6 cut(s) 187, 436, 653, 953, 3056, 3633
TspGWI ACGGA 1 cut(s) 2974
Tth111I GACNNNGTC 1 cut(s) 608
Van91I CCANNNNNTGG 3 cut(s) 699, 1530, 3013
VpaK11BI GGWCC 6 cut(s) 279, 380, 3293, 3302, 3537, 3728
XagI CCTNNNNNAGG 4 cut(s) 798, 801, 3219, 3245
XbaI TCTAGA 2 cut(s) 2207, 2699
XceI RCATGY 3 cut(s) 310, 2116, 3145
XcmI CCANNNNNNNNNTGG 1 cut(s) 731
XhoI CTCGAG 2 cut(s) 370, 798
XmiI GTMKAC 4 cut(s) 43, 3083, 3237, 3423
XspI CTAG 7 cut(s) 276, 1638, 2208, 2427, 2700, 3221, 3272
ZrmI AGTACT 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.