Rh7DG484900

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003305
Physical Location & Seq
Forward (+)
69066612 .. 69079794
13183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG484900.1

Sequence Viewer

Length: 4539 bp
ATGGATCCTTGGAAGTGCACTCCGTTTGGTGGTGCAAATTCTCTTAATATGGCACCTTCAAATATATTAAGTAAGGTGAATGAGAGGGCTAAATTTGAAAAAGAAGAGAGGGATACAGGTCACACTGTTGAGGCTGGAATAGATATAGATATTAGAGAAGTATACTTTCTGATTATGCACTTTCTATCTGTTGGGCCATGTCGGAGGACTTTTGAACAATTTGCAAATGATCTTGTGGAACATGAGCTCCTGCCTAGAAGGTATCATGCTTTGTTTTCAAGAAGCGGTGTAAGCAGTAGCAATGATAATGATAATAACACCTCTTTCCCACTGAGTTACACCAAATTGGTTGAAAGGTATCCTCATATAGAGAAGGATCACTTGGTAAAGCTTCTAAAGCAACTGATGTTGAGTATAGCTACTCCTTTGCATGGCAAGGTTGGAAGAAATACTCTGAATGCAGCTGATGTCCCTACATTATTGGGAACTGGTTCTTTCTCGCTTCTGGATTGTGATAGGAATGTGGTGAATAGGCGAGTTAAGCCGCTTCCTGCTTACCTGCGTTGGCCTTACATGCAGGCTGGTCAAGTTCATGGACTTGGTTTAAGGGAAGTTGGAGGAGGTTTTGCTAAGCATCATCGTGCACCATCTATTCGCTCTGCATGCTATGCCATTGCTAAACCATCAACTATGGTGCAAAAGATGAACAACAAAAAGAAGCTAAGGGGGCACCGTAATGCTGTCTATTGTGCCATTTTTGATCGGTCGGGGAGATATGTTATCACTGGATCGGATGATCGTCTTGTCAAGATTTGGTCAATGGAAACTGCACTTTGCTTGGCTAGCTGTCGTGGACATGAAGGTGACATTACTGACTTGGCTGTGAGTTCAAACAACACTTTGGTGGCTTCTGCATCAAATGATTTTGTTATTCGAGTTTGGCGTTTGCCAGATGGATATCCCATTTCCGTTCTGCAGGGCCATACTGGAGCTGTGACTGCTATAGCATTTAGTCCAAGGCTTAGTGCAATTTACCAACTTTTATCGTCATCAGATGACGGGACTTGTCGAATTTGGGATGCTAGGTCCTCTCAGTGCCCTCCACGAATATTCATGCCAAAACCTTCGGACCCTTTAACAGGGAAGAGCAATGGCATTTCAAGTCTTGGACCCTCATCAAGCAGTGGCCCACAGGGCCATCAAATACTTTGTTGTGCTTACAATGCTAGTGGAACTGTTTTTGTCACCGGTAGCTCTGACACTTTTGCCCGGGTATGGAGTGCTGTGAAATCTAATGCAGATGACTCAGAACAACCAATACATGAGATGGATGTATTGTCTGGCCATGAGAATGATGTCAATTATGTGCAATTCAGTGGTTGTGCCATTCCATCAAAATCTTCATTTTCTGACTCTTTGAAGGAGGAGAATATTATGAAGTCCAAAAATTCCTGGTTTTGTCACAACAACATCGTTACCTGCTCTCGCGATGGCAGTGCCATTATATGGGTTCCAAAATCACACAGATCACATGGGAAATTTGGACGATGGATTCGTGCTTACCATCTCAAAGTTCCACCTCCCCCACTGCCTCCTCAACCTCCTCGAGGTGGCCCACGTCAGAGATTTCTTCCTACCCCTCGTGGTGTTAACATGATTGTATGGAGCCTGGATAACCGCTTTGTGCTTGCAGCTATCATGGATTGCAGAATCTGCGTTTGGAATGCTGTTGATGGTAGCTTAGTACATTCTTTGACCGGTCATAATGCATCTTCTTATGTTTTGGATGTTCATCCCTTTAATCCTCGGATTGCTATGAGTGCTGGGTATGATGGACAAACAATCATATGGGATATCTGGGAAGGAACACCCATCAAGATTTATGAAGTTGGACACGTTAAGTTGGTTGATGGGAAGTTTTCTGCGGATGGGACATCGATTGTACTTTCAGATGATGTGGGCCAAATATATTTAATAAACACAGGTGAAGGAGAGTCCCAGAAAGATGCTAAATATGATCAGTTCTTCCTAGGAGATTATCGGCCCCTTGTGCGGGATACTGCTGGACATCTTCTTGATCAGGAGACACAACTTCCTGCTTATCGAAGGAATCTTCAAGATCCTCTCTGTGATTCAAGTATGATTCCATATCCAGAGCCATACCAGAGTCAATACCAGCGGCGGCGACTCGGTGCATTGGGAATGGAGTGGAAGCCTTCATCAGTAAATTTTGCAGTTGGCCTGGATATTGGTGCAGGCATGGACTATCATTTGCCTCCGTTGCCCGATTGGGAGAGAGTGATAGAGCCACTTCCAGACTTCATCGATGCCTTGCTATGGGAGCCAGAAAATGAATTCATAAGTGAAGATACTGATTCAGATTTTAATGTCACTGAGGAAAATTCTAGTGAAGATGAGAAAGGAAATATTAGCACCAGCTCTTCTAGTGCTCCAGAATGCAGTGCAGAAGACAGTGAAGTTGGATGCAGCAATAAGGATGGCCTTCGCAGATCAAGAAGAAAAACACAAAAGGTCACCTCTTCTGAGAGACGTGGGAAGAAAAGGAATTTGGGTGAGGAGGATGGGATTATATCTGGGAGTAATAGAATAAAAAATCCAAAAAGTGGCCGAAAAGTTTCAAAGAGGAACTGTAGAGCAAAAACGTCAAGACCCCAGAGAGTTGCAGCACGGAATGCTCGAAATGTGCTTTCTCAGAATCCGGGAACATCTACAGATGGAGAAGAAGATGACTGGGAAGCTGATTCATCAGATAGTGAGCCACAGCAGAAAAAGTTCCGTAGTCAAAGCAATGAGTGTGATGGAAGCTTCCAGAATATGCAAGAGTTACAGAATAATGAAAAACCATCTCTTCGTGAGATTCATGATATGGCCAATCCTCTTGCTGTTCCTGACTCTCAAACAAATGTTACAAGAAAAAAATTGGTTTTGAAGCTTCCACTCCGTCGTGATTTGAAGAAGCAAGAAGCTGTGCAGGATTCTTCATCTTCTAGATATCGCGAAGTCGGTCAAGATAAGAAGATTAATAATATCTCTGTGGATGGAGCTTCATCTTTGGCAGATGCACTTGATGTGCCGTTCTCTGGAAATTTCATGAGCAATGTATTTACAGATCCTGGGCAAACCGTAGAGGCTGGGTTTCCTTTGGAGGCATCTTCATGTGACATGGAGAACAAAATTAGGTGGGGAGAGGTCAAGACACGGACATCAAAGCATACAAGATCAGGAGATCCCACACCAATTGATCCAGCCTCTGGGTTGCTTGTCAGTTCTGAAGTCCATATGGCAGAGAAAAATGTTGTTCGGGATAAGGAACATATTAGAGAGTTTTCTCATGAATCAACGTCAAAAGGTTCTGGAATAAAACACTCTGATGAATCAATGGATAATGCTTCCCTTAAGTTTCTTGCACAAGAAACAGGTTCTGGGAACTTAATGCCTGAAGATCCTTCATGCATGGACCGGAATTTAAATCTGGAAGTACCAGAAATGGGTGGAGGTTCTGGCACATTGAGTTCGTGGAGATTTTTCTGCAAGGATAGGACAAAAACAGAAGGGTTTGATGGTAAATTGGAAGAAAATACTTCTCGTATCAATGATCATTATGATGCAGGAATGAATCTCCCTGAAGCTGCAACTGATTCAGCACGCAGGCTAAGAACCTTAAAGATCAAGGCGACTTCACGGGAACCAGACTCTGTGAGCCGTATCCCTAAGTTGAGAGGGGGACACCAAAGGACATCTATAGATGCAGAAGATCCCCCTGCCAAGGTCCGTGATACAAGACTTCAGAGATCAAGGTCCACTAGAAATCAGTCTGACCAAAGTTTGTCAACCCAAAGGATGTTGGATAACCCTGTTGGAAAACTTTCATGGCTGATGTTGTCTAAACACGAGGAAGGTTACCGTTATATTCCTCAGCTAGGTGATGAAGTTGTATACTTGAGACAGGGTCATCAAGAGTATACGGAATTGGCTTTGAAGTCAGATCAAGGCCCTTGGGGTCCGTGGGGATCAATGAAGGAAAAAATCAGAGCTGTGGAAATCTGCAAGGTTGTAGGCCTCGAGTATGACTCCATGCCTGGTTCAGGGGAAAGCTGTAGCAAGATCTTATTCAGATTTGTGGAGTCTTCTTCTGCCATGTGTGGTAAAACCTTCAAATTAACATTGCCTGAAATTGACTTTAATGACTTCATAGTTGAGAAAAGCTGGTACGATGCCGCCATTGGAAGAAACTGGGCAGCGGGAGAACACTGTGAGGTCTGGTGGAGGGACTCAGATGGAGGCGGAGCGTGGTGGCAAGGCCGAATTGTGCACTGTCAGGCGAAATCTCATGAGTTTCCTGATAGCCCGTGGTTAAGATACGCGGTTAGGTATGAGAATGAAGATGATATACCTCATAGGCATTGTCCTTGGGAACTGCATGATGTATCCATGTCGTGGGAAGCACCGCATATTGATCATGAAAGCAGAGATAAGCTGCTTCACTATTTTTCTAAATCGGAGAAGAAGGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1512

Amino Acids

169.07

Weight (kDa)

6.51

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRWD1_N PF25437 41 - 138 3.2e-30 BRWD1-like, N-terminal domain
Beta-prop_TEP1_2nd PF25047 230 - 361 9.9e-13 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 232 - 340 1.4e-21 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 232 - 366 5.5e-16 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 232 - 370 9.2e-29 WDR5 beta-propeller domain
WDR55 PF24796 233 - 365 6.5e-08 WDR55
Beta-prop_WDR3_1st PF25173 233 - 366 5.8e-24 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 233 - 321 2.2e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 236 - 314 4.5e-11 Prp19 WD40 domain
WD40_Gbeta PF25391 237 - 365 6.1e-14 G protein beta WD-40 repeat protein
WD40 PF00400 238 - 273 1.3e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 238 - 315 4e-11 WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 241 - 370 2.8e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 241 - 365 9.2e-12 WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 244 - 359 1.6e-07 MABP1/WDR62 second WD40 domain
Beta-prop_SCAP PF24017 257 - 363 7.3e-10 SCAP Beta-propeller
WD40 PF00400 279 - 314 3.3e-07 WD domain, G-beta repeat
EIF3I PF24805 284 - 366 2.5e-06 EIF3I
Beta-prop_THOC3 PF25174 286 - 368 1.1e-12 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 289 - 377 1.7e-13 WDHD1 first WD40 domain
WD40_Prp19 PF24814 309 - 370 6.8e-06 Prp19 WD40 domain
WD40 PF00400 320 - 360 3.7e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 547 - 666 2.7e-11 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 550 - 673 8.1e-13 THOC3 beta-propeller domain
BRWD_AD PF25313 1308 - 1484 7.3e-57 BRWD/PHIP ancillary domain-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1605
Acc36I ACCTGC 2 cut(s) 567, 1487
AccB1I GGYRCC 2 cut(s) 52, 729
AccB7I CCANNNNNTGG 4 cut(s) 1506, 2624, 3272, 4458
AccI GTMKAC 3 cut(s) 162, 3957, 3983
AccII CGCG 3 cut(s) 1488, 3018, 4385
AcoI YGGCCR 3 cut(s) 1342, 2626, 2889
AcuI CTGAAG 4 cut(s) 3312, 3480, 3666, 3791
AfaI GTAC 4 cut(s) 1746, 1944, 3501, 4232
AflII CTTAAG 1 cut(s) 3416
AflIII ACRYGT 1 cut(s) 1894
AgeI ACCGGT 2 cut(s) 1247, 1757
AjiI CACGTC 2 cut(s) 1619, 2552
AjnI CCWGG 5 cut(s) 1451, 1668, 2241, 3133, 4099
AjuI GAANNNNNNNTTGG 6 cut(s) 365, 397, 1702, 1734, 2552, 2584
AleI CACNNNNGTG 1 cut(s) 902
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
Alw21I GWGCWC 5 cut(s) 20, 249, 646, 2452, 4335
Alw26I GTCTC 3 cut(s) 2078, 2542, 3958
Alw44I GTGCAC 3 cut(s) 16, 642, 4331
AlwNI CAGNNNCTG 5 cut(s) 1713, 3134, 3272, 3443, 3716
Ama87I CYCGRG 3 cut(s) 1269, 1605, 4082
ApaLI GTGCAC 3 cut(s) 16, 642, 4331
ApeKI GCWGC 7 cut(s) 461, 1691, 2487, 2684, 3650, 4259, 4498
ArsI GACNNNNNNTTYG 2 cut(s) 1536, 1568
AseI ATTAAT 1 cut(s) 3042
AsiGI ACCGGT 2 cut(s) 1247, 1757
Asp700I GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3886
AspA2I CCTAGG 1 cut(s) 2029
AsuC2I CCSGG 3 cut(s) 1270, 1271, 2721
AsuHPI GGTGA 8 cut(s) 88, 538, 875, 1237, 1997, 2527, 2585, 3956
AsuNHI GCTAGC 1 cut(s) 842
AvaI CYCGRG 3 cut(s) 1269, 1605, 4082
AvaII GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
AvrII CCTAGG 1 cut(s) 2029
BaeGI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4335
BalI TGGCCA 2 cut(s) 1344, 2891
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 52, 729
BanII GRGCYC 1 cut(s) 249
BarI GAAGNNNNNNTAC 2 cut(s) 4395, 4427
BauI CACGAG 2 cut(s) 1641, 3911
BbsI GAAGAC 2 cut(s) 2475, 4140
Bbv12I GWGCWC 5 cut(s) 20, 249, 646, 2452, 4335
BbvCI CCTCAGC 1 cut(s) 3936
BbvI GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3637, 4271, 4485
BceAI ACGGC 2 cut(s) 3079, 3708
BcgI CGANNNNNNTGC 2 cut(s) 1478, 1512
BciT130I CCWGG 5 cut(s) 1453, 1670, 2243, 3135, 4101
BciVI GTATCC 5 cut(s) 106, 369, 2050, 3737, 4459
BclI TGATCA 4 cut(s) 2017, 2077, 3616, 4477
BcnI CCSGG 3 cut(s) 1270, 1271, 2721
BcoDI GTCTC 3 cut(s) 2078, 2542, 3958
BfmI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 3762, 4117
BfrI CTTAAG 1 cut(s) 3416
BfuAI ACCTGC 2 cut(s) 567, 1487
BfuI GTATCC 5 cut(s) 106, 369, 2050, 3737, 4459
BglI GCCNNNNNGGC 1 cut(s) 1194
BglII AGATCT 1 cut(s) 4125
BlnI CCTAGG 1 cut(s) 2029
BlpI GCTNAGC 1 cut(s) 630
Bme1390I CCNGG 8 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3135, 4101
Bme18I GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
BmeT110I CYCGRG 3 cut(s) 1269, 1605, 4082
BmgBI CACGTC 2 cut(s) 1619, 2552
BmrFI CCNGG 8 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3135, 4101
BmrI ACTGGG 2 cut(s) 2761, 4264
BmtI GCTAGC 1 cut(s) 846
BmuI ACTGGG 2 cut(s) 2761, 4264
BpiI GAAGAC 2 cut(s) 2475, 4140
BplI GAGNNNNNCTC 2 cut(s) 4076, 4108
BpmI CTGGAG 2 cut(s) 1008, 2436
Bpu10I CCTNAGC 2 cut(s) 722, 3936
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 3982
BpuMI CCSGG 3 cut(s) 1270, 1271, 2721
Bsa29I ATCGAT 2 cut(s) 1937, 2325
BsaBI GATNNNNATC 2 cut(s) 957, 1791
BsaWI WCCGGW 3 cut(s) 1247, 1757, 3480
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse118I RCCGGY 2 cut(s) 1247, 1757
Bse1I ACTGG 5 cut(s) 493, 790, 991, 2756, 4259
Bse3DI GCAATG 6 cut(s) 307, 672, 1156, 2815, 3124, 4184
Bse8I GATNNNNATC 2 cut(s) 957, 1791
BseBI CCWGG 5 cut(s) 1453, 1670, 2243, 3135, 4101
BseCI ATCGAT 2 cut(s) 1937, 2325
BseJI GATNNNNATC 2 cut(s) 957, 1791
BseMI GCAATG 6 cut(s) 307, 672, 1156, 2815, 3124, 4184
BseMII CTCAG 8 cut(s) 323, 1106, 1320, 2385, 2535, 2726, 3950, 4308
BseNI ACTGG 5 cut(s) 493, 790, 991, 2756, 4259
BseRI GAGGAG 5 cut(s) 633, 1439, 1584, 1593, 2591
BseSI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4335
BseXI GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3637, 4271, 4485
BseYI CCCAGC 2 cut(s) 1823, 3152
BsgI GTGCAG 4 cut(s) 813, 2274, 2484, 3011
Bsh1236I CGCG 3 cut(s) 1488, 3018, 4385
Bsh1285I CGRYCG 1 cut(s) 767
BshNI GGYRCC 2 cut(s) 52, 729
BshTI ACCGGT 2 cut(s) 1247, 1757
BshVI ATCGAT 2 cut(s) 1937, 2325
BsiEI CGRYCG 1 cut(s) 767
BsiHKAI GWGCWC 5 cut(s) 20, 249, 646, 2452, 4335
BsiHKCI CYCGRG 3 cut(s) 1269, 1605, 4082
BsiSI CCGG 5 cut(s) 1248, 1270, 1758, 2720, 3481
BslFI GGGAC 6 cut(s) 455, 1075, 1945, 1981, 3759, 4304
BsmAI GTCTC 3 cut(s) 2078, 2542, 3958
BsmBI CGTCTC 1 cut(s) 2542
BsmFI GGGAC 6 cut(s) 455, 1075, 1945, 1981, 3759, 4304
BsmI GAATGC 4 cut(s) 463, 1729, 2462, 2698
BsoBI CYCGRG 3 cut(s) 1269, 1605, 4082
Bsp1286I GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4335
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp68I TCGCGA 2 cut(s) 1488, 3018
BspCNI CTCAG 8 cut(s) 324, 1105, 1319, 2386, 2536, 2725, 3949, 4307
BspDI ATCGAT 2 cut(s) 1937, 2325
BspFNI CGCG 3 cut(s) 1488, 3018, 4385
BspHI TCATGA 5 cut(s) 2881, 3111, 3352, 4351, 4480
BspMAI CTGCAG 1 cut(s) 978
BspMI ACCTGC 2 cut(s) 567, 1487
BspOI GCTAGC 1 cut(s) 846
BspQI GCTCTTC 2 cut(s) 1139, 2446
BspT107I GGYRCC 2 cut(s) 52, 729
BspTI CTTAAG 1 cut(s) 3416
BsrDI GCAATG 6 cut(s) 307, 672, 1156, 2815, 3124, 4184
BsrFI RCCGGY 2 cut(s) 1247, 1757
BsrI ACTGG 5 cut(s) 493, 790, 991, 2756, 4259
BssAI RCCGGY 2 cut(s) 1247, 1757
BssNAI GTATAC 3 cut(s) 163, 3958, 3984
BssSI CACGAG 2 cut(s) 1641, 3911
BssT1I CCWWGG 6 cut(s) 8, 1016, 2029, 3786, 4016, 4430
Bst1107I GTATAC 3 cut(s) 163, 3958, 3984
Bst2BI CACGAG 2 cut(s) 1641, 3911
Bst2UI CCWGG 5 cut(s) 1453, 1670, 2243, 3135, 4101
Bst4CI ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3145, 3926, 4274, 4337
Bst6I CTCTTC 5 cut(s) 99, 1139, 2446, 2545, 2874
BstAFI CTTAAG 1 cut(s) 3416
BstAPI GCANNNNNTGC 3 cut(s) 668, 1713, 2693
BstC8I GCNNGC 7 cut(s) 579, 664, 844, 1689, 2257, 3667, 3671
BstDSI CCRYGG 2 cut(s) 4025, 4370
BstEII GGTNACC 2 cut(s) 2533, 3920
BstENI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3939, 4104
BstFNI CGCG 3 cut(s) 1488, 3018, 4385
BstMAI GTCTC 3 cut(s) 2078, 2542, 3958
BstMCI CGRYCG 1 cut(s) 767
BstNI CCWGG 5 cut(s) 1453, 1670, 2243, 3135, 4101
BstNSI RCATGY 2 cut(s) 577, 666
BstPI GGTNACC 2 cut(s) 2533, 3920
BstSCI CCNGG 8 cut(s) 1268, 1269, 1451, 1668, 2241, 2719, 3133, 4099
BstSFI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 3762, 4117
BstSLI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4335
BstUI CGCG 3 cut(s) 1488, 3018, 4385
BstV1I GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3637, 4271, 4485
BstV2I GAAGAC 2 cut(s) 2475, 4140
BstX2I RGATCY 7 cut(s) 4, 2119, 3130, 3247, 3463, 3775, 4125
BstYI RGATCY 7 cut(s) 4, 2119, 3130, 3247, 3463, 3775, 4125
BstZ17I GTATAC 3 cut(s) 163, 3958, 3984
Bsu15I ATCGAT 2 cut(s) 1937, 2325
BsuI GTATCC 5 cut(s) 106, 369, 2050, 3737, 4459
BsuTUI ATCGAT 2 cut(s) 1937, 2325
BtgI CCRYGG 2 cut(s) 4025, 4370
BtgZI GCGATG 1 cut(s) 1503
BtrI CACGTC 2 cut(s) 1619, 2552
BtsI GCAGTG 4 cut(s) 1189, 1501, 1586, 2467
BtuMI TCGCGA 2 cut(s) 1488, 3018
BveI ACCTGC 2 cut(s) 567, 1487
Cac8I GCNNGC 7 cut(s) 579, 664, 844, 1689, 2257, 3667, 3671
CaiI CAGNNNCTG 5 cut(s) 1713, 3134, 3272, 3443, 3716
CciI TCATGA 5 cut(s) 2881, 3111, 3352, 4351, 4480
Cfr10I RCCGGY 2 cut(s) 1247, 1757
Cfr9I CCCGGG 1 cut(s) 1269
ClaI ATCGAT 2 cut(s) 1937, 2325
Csp6I GTAC 4 cut(s) 1745, 1943, 3500, 4231
CspAI ACCGGT 2 cut(s) 1247, 1757
CspCI CAANNNNNGTGG 4 cut(s) 1210, 1245, 3241, 3276
CviQI GTAC 4 cut(s) 1745, 1943, 3500, 4231
DraI TTTAAA 1 cut(s) 3489
EaeI YGGCCR 3 cut(s) 1342, 2626, 2889
Eam1104I CTCTTC 5 cut(s) 99, 1139, 2446, 2545, 2874
EarI CTCTTC 5 cut(s) 99, 1139, 2446, 2545, 2874
EciI GGCGGA 1 cut(s) 4320
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 6 cut(s) 8, 1016, 2029, 3786, 4016, 4430
Eco147I AGGCCT 1 cut(s) 4080
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 3 cut(s) 959, 1855, 3014
Eco47I GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 4 cut(s) 3312, 3480, 3666, 3791
Eco88I CYCGRG 3 cut(s) 1269, 1605, 4082
Eco91I GGTNACC 2 cut(s) 2533, 3920
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3939, 4104
EcoO109I RGGNCCY 2 cut(s) 1086, 4013
EcoO65I GGTNACC 2 cut(s) 2533, 3920
EcoRI GAATTC 1 cut(s) 2354
EcoRII CCWGG 5 cut(s) 1451, 1668, 2241, 3133, 4099
EcoRV GATATC 3 cut(s) 959, 1855, 3014
EcoT14I CCWWGG 6 cut(s) 8, 1016, 2029, 3786, 4016, 4430
EcoT22I ATGCAT 2 cut(s) 1771, 3476
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 6 cut(s) 8, 1016, 2029, 3786, 4016, 4430
Esp3I CGTCTC 1 cut(s) 2542
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 6 cut(s) 455, 1075, 1945, 1981, 3759, 4304
FauI CCCGC 2 cut(s) 2046, 4255
FauNDI CATATG 2 cut(s) 1847, 3300
FbaI TGATCA 4 cut(s) 2017, 2077, 3616, 4477
FblI GTMKAC 3 cut(s) 162, 3957, 3983
FriOI GRGCYC 1 cut(s) 249
GsaI CCCAGC 2 cut(s) 1827, 3156
GsuI CTGGAG 2 cut(s) 1008, 2436
HapII CCGG 5 cut(s) 1248, 1270, 1758, 2720, 3481
HincII GTYRAC 2 cut(s) 1651, 3852
HindII GTYRAC 2 cut(s) 1651, 3852
HindIII AAGCTT 3 cut(s) 389, 2824, 2951
HpaI GTTAAC 1 cut(s) 1651
HpaII CCGG 5 cut(s) 1248, 1270, 1758, 2720, 3481
HphI GGTGA 8 cut(s) 88, 538, 875, 1237, 1997, 2527, 2585, 3956
Hpy99I CGWCG 1 cut(s) 2967
HpyCH4III ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3145, 3926, 4274, 4337
HpyCH4IV ACGT 5 cut(s) 1618, 1896, 2551, 2663, 3362
HpySE526I ACGT 5 cut(s) 1618, 1896, 2551, 2663, 3362
Ksp22I TGATCA 4 cut(s) 2017, 2077, 3616, 4477
KspAI GTTAAC 1 cut(s) 1651
LguI GCTCTTC 2 cut(s) 1139, 2446
LmnI GCTCC 7 cut(s) 252, 989, 1665, 2341, 2455, 3062, 4307
Lsp1109I GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3637, 4271, 4485
MaeII ACGT 5 cut(s) 1618, 1896, 2551, 2663, 3362
MfeI CAATTG 1 cut(s) 3258
MflI RGATCY 7 cut(s) 4, 2119, 3130, 3247, 3463, 3775, 4125
MhlI GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4335
MlsI TGGCCA 2 cut(s) 1344, 2891
MluNI TGGCCA 2 cut(s) 1344, 2891
MmeI TCCRAC 7 cut(s) 182, 421, 595, 1870, 2461, 3846, 3859
Mox20I TGGCCA 2 cut(s) 1344, 2891
Mph1103I ATGCAT 2 cut(s) 1771, 3476
MroXI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3886
MscI TGGCCA 2 cut(s) 1344, 2891
MslI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 3175, 3390, 3624
Msp20I TGGCCA 2 cut(s) 1344, 2891
MspA1I CMGCKG 3 cut(s) 464, 2179, 4262
MspCI CTTAAG 1 cut(s) 3416
MspI CCGG 5 cut(s) 1248, 1270, 1758, 2720, 3481
MspR9I CCNGG 8 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3135, 4101
MunI CAATTG 1 cut(s) 3258
Mva1269I GAATGC 4 cut(s) 463, 1729, 2462, 2698
MvaI CCWGG 5 cut(s) 1453, 1670, 2243, 3135, 4101
MvnI CGCG 3 cut(s) 1488, 3018, 4385
NciI CCSGG 3 cut(s) 1270, 1271, 2721
NdeI CATATG 2 cut(s) 1847, 3300
NheI GCTAGC 1 cut(s) 842
NmuCI GTSAC 8 cut(s) 119, 863, 994, 1243, 1460, 2389, 2533, 3179
NruI TCGCGA 2 cut(s) 1488, 3018
NsiI ATGCAT 2 cut(s) 1771, 3476
NspI RCATGY 2 cut(s) 577, 666
OliI CACNNNNGTG 1 cut(s) 902
PaeI GCATGC 1 cut(s) 666
PaeR7I CTCGAG 2 cut(s) 1605, 4082
PagI TCATGA 5 cut(s) 2881, 3111, 3352, 4351, 4480
PceI AGGCCT 1 cut(s) 4080
PciSI GCTCTTC 2 cut(s) 1139, 2446
PcsI WCGNNNNNNNCGW 3 cut(s) 940, 1552, 2695
PctI GAATGC 4 cut(s) 463, 1729, 2462, 2698
PdmI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3886
PflFI GACNNNGTC 1 cut(s) 3969
PflMI CCANNNNNTGG 4 cut(s) 1506, 2624, 3272, 4458
PfoI TCCNGGA 1 cut(s) 2719
PinAI ACCGGT 2 cut(s) 1247, 1757
PpuMI RGGWCCY 1 cut(s) 1086
PshBI ATTAAT 1 cut(s) 3042
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 1086
Psp6I CCWGG 5 cut(s) 1451, 1668, 2241, 3133, 4099
PspEI GGTNACC 2 cut(s) 2533, 3920
PspFI CCCAGC 2 cut(s) 1823, 3152
PspGI CCWGG 5 cut(s) 1451, 1668, 2241, 3133, 4099
PspPPI RGGWCCY 1 cut(s) 1086
PspXI VCTCGAGB 2 cut(s) 1605, 4082
PsrI GAACNNNNNNTAC 2 cut(s) 1302, 1334
PstI CTGCAG 1 cut(s) 978
PstNI CAGNNNCTG 5 cut(s) 1713, 3134, 3272, 3443, 3716
PsuI RGATCY 7 cut(s) 4, 2119, 3130, 3247, 3463, 3775, 4125
PsyI GACNNNGTC 1 cut(s) 3969
PvuII CAGCTG 1 cut(s) 464
RruI TCGCGA 2 cut(s) 1488, 3018
RsaI GTAC 4 cut(s) 1746, 1944, 3501, 4232
RsaNI GTAC 4 cut(s) 1745, 1943, 3500, 4231
RseI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 3175, 3390, 3624
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 2 cut(s) 1139, 2446
ScrFI CCNGG 8 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3135, 4101
SduI GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4335
SfcI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 3762, 4117
SfiI GGCCNNNNNGGCC 1 cut(s) 1194
Sfr274I CTCGAG 2 cut(s) 1605, 4082
SinI GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
SlaI CTCGAG 2 cut(s) 1605, 4082
SmaI CCCGGG 1 cut(s) 1271
SmiI ATTTAAAT 1 cut(s) 3489
SmiMI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 3175, 3390, 3624
SmlI CTYRAG 4 cut(s) 1605, 3416, 3961, 4082
SmoI CTYRAG 4 cut(s) 1605, 3416, 3961, 4082
SphI GCATGC 1 cut(s) 666
SseBI AGGCCT 1 cut(s) 4080
SspI AATATT 3 cut(s) 1110, 1432, 2428
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 4080
StyD4I CCNGG 8 cut(s) 1268, 1269, 1451, 1668, 2241, 2719, 3133, 4099
StyI CCWWGG 6 cut(s) 8, 1016, 2029, 3786, 4016, 4430
SwaI ATTTAAAT 1 cut(s) 3489
TaaI ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3145, 3926, 4274, 4337
TaiI ACGT 5 cut(s) 1621, 1899, 2554, 2666, 3365
TaqI TCGA 8 cut(s) 934, 1069, 1606, 1937, 2104, 2325, 2698, 4083
TaqII GACCGA 2 cut(s) 753, 3014
TatI WGTACW 2 cut(s) 1744, 1942
TauI GCSGC 4 cut(s) 547, 2182, 2185, 4241
TseFI GTSAC 8 cut(s) 119, 863, 994, 1243, 1460, 2389, 2533, 3179
TseI GCWGC 7 cut(s) 461, 1691, 2487, 2684, 3650, 4259, 4498
Tsp45I GTSAC 8 cut(s) 119, 863, 994, 1243, 1460, 2389, 2533, 3179
TspMI CCCGGG 1 cut(s) 1269
Tth111I GACNNNGTC 1 cut(s) 3969
Van91I CCANNNNNTGG 4 cut(s) 1506, 2624, 3272, 4458
Vha464I CTTAAG 1 cut(s) 3416
VneI GTGCAC 3 cut(s) 16, 642, 4331
VpaK11BI GGWCC 7 cut(s) 1086, 1129, 1169, 3478, 3790, 3819, 4022
VspI ATTAAT 1 cut(s) 3042
XagI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3939, 4104
XbaI TCTAGA 1 cut(s) 3008
XceI RCATGY 2 cut(s) 577, 666
XhoI CTCGAG 2 cut(s) 1605, 4082
XmaI CCCGGG 1 cut(s) 1269
XmaJI CCTAGG 1 cut(s) 2029
XmiI GTMKAC 3 cut(s) 162, 3957, 3983
XmnI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3886
Zsp2I ATGCAT 2 cut(s) 1771, 3476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.