MD11G1314700.v1.1

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003305
Physical Location & Seq
Forward (+)
42707340 .. 42717130
9791 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1314700.v1.1.491

Sequence Viewer

Length: 3060 bp
ATGGCACCTTCAAGCATTTTAAATAAGTTGAATGAGAAGGCTCAGTTTGAAAAAGAAGAGAGGGATACAGGTCATGCTATCGAGGCTGGAGTCGATATAGACATTAGAGAGGTTTATTTTTTGATTATGCACTTTCTGTCACTTGGGCCATGTCAGAGGACTTTCGAACAGTTTGGGAATGATCTTCTGGAACATCAGCTTCTACCTAGAAGGTATCATGCTTGGTTTTCAAGGAGCGGAATAGGAAGTGACAATAGTAATGAGGATGCTACCTCTTTCCCATTGAGTTACAGCAACTTGGTTGAAAGGTATCCTCATATAGAGAGAGATCACTTGGTAAAGCTTCTAAAGAAACTGCTACTGAGTATAGCCACTCCATTGCATGGCAAGGTTGGAAGAAGTGCTCTGAATGCAGCTGATGTCCCTACATTACTGGGAACTGGTTCCTTCTCGCTTCTGGATGGTGATAGGAATAAGGAAAATAAGAGAGTTAAGCCCCTGCCAGCTCACCTGCGTTGGCCTTACATGCAGGCTGATCAAATTCATGGCCTTAGTTTAAGGGAAATTGGAGGAGGTTTTGCAAAGCATCATCGAGCTCCATCCATTCGCTCTGCATGTTATGCGATTGCTAAACCATCAACTATGGTGCAGAAGATGAACAACAAAAAGAAGCTACGGGGGCACCGTAATGCTGTTTACTGTGCCATTTTCGATCGGTCTGGGAGATATGTTATCACGGGTGCAGATGATCGGCTTGTGAAGATTTGGTCAATGGAAACTGCACTTTGCTTGGCTAGCTGTCGTGGACATGAAGGAGACATTACTGACTTGGCTGTAAGTTCGAACAATGCTTTGGTGGCATCTGCTTCAAATGACTTTTCCATTCGAGTTTGGCGTTTGCCAGATGGATTTCCAATTTCAGTTCTTCAGGGGCATACTGGAGCTGTGACTGCTATTGCATTTAGTCCCAGGCTTAGTGCTGTTTACCAGCTTTTATCGTCATCAGATGATGGGACTTGTCGAATATGGGATGCTAGGTCCTCCCCGTGCCCACTGCGAGTATACATGCCAAAACCTCCAGAGACTTCAACTGGGAAGAGCAATGCTTTTGCAATCACTGGATCCTCCTCGAGCAATGGTCCACAGAGCCATCAAATACTTTGTTGTGCTTACAACGCCAATGGAACTGTTTTTGTCACGGGTAGCTCTGACACTTTTGCAAGGGTCTGGAATGCTTTAAAATCTAATACTGATAACTCAGAACAACCAATACATGAGATGGATGTACTGGCTGGCCATGAGAATGACGTAAATTATGTTCAGTTCAGTGGTTGTGTCATTCCTTCAAAGTCTTCATTTTCTGACTCTGTCAAGGAGGAGACTAATGGGAAGTTCAAAAATTCCTGGTTTTGTCACAACAACATAGTTACCTGCTCTCGTGATGGCAGTGCCATTATATGGGTTCCAAGATCACACAAAATCCATGGGAAAGTTGGACGTTGGACACGTGCATATCATCTAAAAGTTCCACCTCCCCCACTTCCTCCTCAGCCTCCTCGAGGAGGTCCACGTCAGAGATTTCTTCCCACCCCTCGTGGTGTTAACATGATTGTGTGGAGCCTGGATAACCGCTTTGTGCTTGCAGCTATCATGGATTGCAGAATTTGTGTTTGGAATGCTGTTGATGGTAGCTTAGTACATTCTTTAACCGGTCACACTGCATCGTCTTATGTTTTGGATGTGCATCCCTTCAATCCTCGAATTGCTATGAGTGCTGGGTATGATGGGCAAACAATAGTTTGGGATATATGGGAGGGCGTGCCTATTAAGATATACGAACTTGGACATATAAAATTGGTTGATGGGAAGTTTTCGGCGGATGGTACATCAATAGTACTTTCAGATGACGTTGGCCAAGTATATTTAATAAATACAGGAGAAGGCGAGTCTCAAAAAGATGCTGAATATGATCAGTTCTTCCTTGGGGATTATCGCCCCCTTGCACGGGATGAGTTTGGATACCTGATTGATCAGGAGACACAACTTTCCACTTACCGAAGGAATCTTCAAGATCCTCTATGTGATTCAAGTATGATACCATACCCAGAACCTTATCAGAGTACATACCAGCAACGACGACTTGGTGCTCTGGGCATGGAATGGCGTCCATCATCCATGAAATTTTCTGTTGGTGTGGACATCAATACTGGCCAGGATTATATGATGCCTCCTTTGCCAGATCTGGAAAGAATGATTGAACCACTACCAGATTTTATTGATGCCATGTTGTGGGAACCAGAAAATGAGGTTGTGAGTGAAGATACTGATTCGGAGTATAATGTTACTGATGAAAATTCCAGTGAAGGGGAGAAAGGAAATATTAGCACCAGTTCTTCTAGTGATCCAGACTGCAGCGAAGAAGACGGTGAAGCTGGATGCAGTCATAAGGACAGCCTTCGTCGATCAAGGAGAAAAAGACCAAAGGTTGAGTCTTTCGAGAGGCATGTCAAGAAAAGGAGAGTGGGTGAGCATGATCGCGTTATATCTGGGATTAACAGAACTAAAATAAAAAAAGGTGGCCGGAAAGTTTCGAAGTTGAAGTCTTCTAAAGCAAAGACATTGAGACCCCAGCGAGTGGCAGCACGCAATGCTCGAACTGTGTTTTCTCAGAACCCTGGGACATCCACAGAAGGAGAAGCAGATGACTGGGAAGATGATTCATCAAATAGTGAGTCACTTCAGCAAGAATTCCACACTCAAAGCAGTGATGTGGATTTCCAGATAATGCAACGAAAACATACTAAAGAAGAACCATCTCTACATGAGTTTGGCAATATATCCCAGCCTCTTGTAGTTTCTTCGTCTCAGTCAAACGTCAGAAGGATGCCGAAATTGGTTTTTAAGATTAAGAAGCAAGAGGCTCCAGAGGATGTAAAACTCAAAGACAACAATCAGGCTGATTTTGTGTCCCCATCTTCTAGATGTCAAGATGCCACTCCAGATAACCAGATTATTAACAGCCCTGTGGATCCAGATTCCTCTTCGGCCAAATTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1020

Amino Acids

113.66

Weight (kDa)

6.7

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRWD1_N PF25437 26 - 122 1.3e-31 BRWD1-like, N-terminal domain
Beta-prop_TEP1_2nd PF25047 214 - 345 4.8e-13 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 216 - 348 9.6e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 216 - 350 4.6e-27 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 216 - 323 3.5e-20 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 217 - 303 4e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 217 - 351 1.1e-23 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 220 - 300 5.8e-11 Prp19 WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 220 - 360 9.3e-10 CAF1B/HIR1 beta-propeller domain
WD40_Gbeta PF25391 220 - 347 5.3e-14 G protein beta WD-40 repeat protein
WD40 PF00400 222 - 257 5.7e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 222 - 299 3.2e-11 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 225 - 348 1.5e-11 WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 227 - 343 7.9e-08 MABP1/WDR62 second WD40 domain
Beta-prop_SCAP PF24017 241 - 346 1.7e-09 SCAP Beta-propeller
WD40 PF00400 263 - 298 1.4e-07 WD domain, G-beta repeat
EIF3I PF24805 268 - 347 3.5e-06 EIF3I
WD40_WDHD1_1st PF24817 273 - 350 1.7e-12 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 287 - 351 7.3e-09 THOC3 beta-propeller domain
WD40 PF00400 305 - 344 3.3e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 531 - 649 7.3e-11 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 534 - 657 1.2e-12 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 519
AbsI CCTCGAGG 1 cut(s) 1557
Acc36I ACCTGC 2 cut(s) 519, 1439
AccB1I GGYRCC 2 cut(s) 4, 681
AccB7I CCANNNNNTGG 4 cut(s) 383, 1458, 2289, 2635
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 1062
AccII CGCG 1 cut(s) 2538
AciI CCGC 3 cut(s) 237, 1630, 1877
AclWI GGATC 6 cut(s) 1116, 1129, 2066, 2396, 3023, 3036
AcoI YGGCCR 5 cut(s) 1294, 1912, 2209, 2578, 3045
AcsI RAATTY 7 cut(s) 540, 1399, 1662, 2180, 2353, 2747, 3050
AcuI CTGAAG 2 cut(s) 911, 2723
AcvI CACGTG 1 cut(s) 1508
AcyI GRCGYC 1 cut(s) 2164
AfaI GTAC 5 cut(s) 1287, 1698, 1885, 1896, 2122
AfiI CCNNNNNNNGG 9 cut(s) 383, 1458, 1559, 1562, 2004, 2005, 2289, 2364, 2635
AflIII ACRYGT 1 cut(s) 1505
AgeI ACCGGT 1 cut(s) 1709
AjiI CACGTC 1 cut(s) 1571
AjnI CCWGG 5 cut(s) 968, 1403, 1620, 2211, 2674
AjuI GAANNNNNNNTTGG 4 cut(s) 836, 868, 1654, 1686
Alw21I GWGCWC 3 cut(s) 406, 598, 2149
Alw26I GTCTC 7 cut(s) 810, 1076, 1373, 1953, 2030, 2617, 2868
AlwI GGATC 6 cut(s) 1116, 1129, 2066, 2396, 3023, 3036
Ama87I CYCGRG 2 cut(s) 1129, 1557
AoxI GGCC 8 cut(s) 146, 518, 547, 1294, 1912, 2209, 2578, 3045
ApeKI GCWGC 4 cut(s) 413, 1643, 2412, 2639
ApoI RAATTY 7 cut(s) 540, 1399, 1662, 2180, 2353, 2747, 3050
ArsI GACNNNNNNTTYG 6 cut(s) 2474, 2506, 2585, 2617, 2717, 2749
AsiGI ACCGGT 1 cut(s) 1709
Asp700I GAANNNNTTC 1 cut(s) 442
AspS9I GGNCC 4 cut(s) 146, 1038, 1139, 1565
AsuHPI GGTGA 4 cut(s) 476, 500, 2438, 2537
AsuII TTCGAA 3 cut(s) 165, 842, 2591
AsuNHI GCTAGC 1 cut(s) 794
AvaI CYCGRG 2 cut(s) 1129, 1557
AvaII GGWCC 3 cut(s) 1038, 1139, 1565
BaeGI GKGCMC 2 cut(s) 684, 1052
BalI TGGCCA 3 cut(s) 1296, 1914, 2211
BamHI GGATCC 2 cut(s) 1121, 3028
BanI GGYRCC 2 cut(s) 4, 681
BanII GRGCYC 1 cut(s) 598
BauI CACGAG 2 cut(s) 1437, 1593
BbrPI CACGTG 1 cut(s) 1508
BbsI GAAGAC 3 cut(s) 1344, 2427, 2595
Bbv12I GWGCWC 3 cut(s) 406, 598, 2149
BbvCI CCTCAGC 1 cut(s) 1548
BbvI GCAGC 4 cut(s) 425, 1655, 2424, 2651
BciT130I CCWGG 5 cut(s) 970, 1405, 1622, 2213, 2676
BciVI GTATCC 3 cut(s) 58, 321, 2012
BclI TGATCA 3 cut(s) 535, 1969, 2029
BcoDI GTCTC 7 cut(s) 810, 1076, 1373, 1953, 2030, 2617, 2868
BfaI CTAG 5 cut(s) 207, 795, 1035, 2397, 2979
BfmI CTRYAG 1 cut(s) 2410
BfuAI ACCTGC 2 cut(s) 519, 1439
BfuI GTATCC 3 cut(s) 58, 321, 2012
BglII AGATCT 1 cut(s) 2239
BisI GCNGC 4 cut(s) 414, 1644, 2413, 2640
BlsI GCNGC 4 cut(s) 415, 1645, 2414, 2641
BmcAI AGTACT 1 cut(s) 1896
Bme1390I CCNGG 5 cut(s) 970, 1405, 1622, 2213, 2676
Bme18I GGWCC 3 cut(s) 1038, 1139, 1565
BmeT110I CYCGRG 2 cut(s) 1129, 1557
BmgBI CACGTC 1 cut(s) 1571
BmgT120I GGNCC 4 cut(s) 146, 1038, 1139, 1565
BmiI GGNNCC 9 cut(s) 6, 445, 683, 1123, 1464, 1619, 2295, 2922, 3030
BmrFI CCNGG 5 cut(s) 970, 1405, 1622, 2213, 2676
BmrI ACTGGG 3 cut(s) 443, 1101, 2716
BmtI GCTAGC 1 cut(s) 798
BmuI ACTGGG 3 cut(s) 443, 1101, 2716
BpiI GAAGAC 3 cut(s) 1344, 2427, 2595
BpmI CTGGAG 5 cut(s) 108, 960, 1062, 2907, 2982
Bpu10I CCTNAGC 1 cut(s) 1548
Bpu14I TTCGAA 3 cut(s) 165, 842, 2591
BsaAI YACGTR 1 cut(s) 1508
BsaBI GATNNNNATC 1 cut(s) 1743
BsaHI GRCGYC 1 cut(s) 2164
BsaI GGTCTC 1 cut(s) 2617
BsaJI CCNNGG 5 cut(s) 968, 1483, 1981, 2674, 2675
BsaWI WCCGGW 1 cut(s) 1709
BsaXI ACNNNNNCTCC 2 cut(s) 2509, 2539
Bsc4I CCNNNNNNNGG 9 cut(s) 383, 1458, 1559, 1562, 2004, 2005, 2289, 2364, 2635
Bse118I RCCGGY 1 cut(s) 1709
Bse3DI GCAATG 4 cut(s) 377, 1108, 1141, 2653
Bse8I GATNNNNATC 1 cut(s) 1743
BseBI CCWGG 5 cut(s) 970, 1405, 1622, 2213, 2676
BseDI CCNNGG 5 cut(s) 968, 1483, 1981, 2674, 2675
BseJI GATNNNNATC 1 cut(s) 1743
BseLI CCNNNNNNNGG 9 cut(s) 383, 1458, 1559, 1562, 2004, 2005, 2289, 2364, 2635
BseMI GCAATG 4 cut(s) 377, 1108, 1141, 2653
BseMII CTCAG 6 cut(s) 56, 353, 1272, 1562, 2681, 2879
BseRI GAGGAG 6 cut(s) 585, 1117, 1391, 1536, 1545, 1575
BseSI GKGCMC 2 cut(s) 684, 1052
BseXI GCAGC 4 cut(s) 425, 1655, 2424, 2651
BseYI CCCAGC 3 cut(s) 1775, 2628, 2841
BsgI GTGCAG 3 cut(s) 668, 762, 765
Bsh1236I CGCG 1 cut(s) 2538
Bsh1285I CGRYCG 1 cut(s) 715
BshFI GGCC 8 cut(s) 148, 520, 549, 1296, 1914, 2211, 2580, 3047
BshNI GGYRCC 2 cut(s) 4, 681
BshTI ACCGGT 1 cut(s) 1709
BsiEI CGRYCG 1 cut(s) 715
BsiHKAI GWGCWC 3 cut(s) 406, 598, 2149
BsiHKCI CYCGRG 2 cut(s) 1129, 1557
BsiSI CCGG 2 cut(s) 1710, 2581
BslFI GGGAC 5 cut(s) 407, 951, 1027, 2692, 2953
BslI CCNNNNNNNGG 9 cut(s) 383, 1458, 1559, 1562, 2004, 2005, 2289, 2364, 2635
BsmAI GTCTC 7 cut(s) 810, 1076, 1373, 1953, 2030, 2617, 2868
BsmBI CGTCTC 1 cut(s) 2868
BsmFI GGGAC 5 cut(s) 407, 951, 1027, 2692, 2953
BsmI GAATGC 3 cut(s) 415, 1237, 1681
BsnI GGCC 8 cut(s) 148, 520, 549, 1296, 1914, 2211, 2580, 3047
Bso31I GGTCTC 1 cut(s) 2617
BsoBI CYCGRG 2 cut(s) 1129, 1557
Bsp119I TTCGAA 3 cut(s) 165, 842, 2591
Bsp1286I GDGCHC 5 cut(s) 406, 598, 684, 1052, 2149
Bsp19I CCATGG 1 cut(s) 1483
BspACI CCGC 3 cut(s) 237, 1630, 1877
BspANI GGCC 8 cut(s) 148, 520, 549, 1296, 1914, 2211, 2580, 3047
BspCNI CTCAG 6 cut(s) 55, 354, 1271, 1561, 2680, 2878
BspFNI CGCG 1 cut(s) 2538
BspLI GGNNCC 9 cut(s) 6, 445, 683, 1123, 1464, 1619, 2295, 2922, 3030
BspMAI CTGCAG 1 cut(s) 2414
BspMI ACCTGC 2 cut(s) 519, 1439
BspOI GCTAGC 1 cut(s) 798
BspPI GGATC 6 cut(s) 1116, 1129, 2066, 2396, 3023, 3036
BspQI GCTCTTC 1 cut(s) 1091
BspT104I TTCGAA 3 cut(s) 165, 842, 2591
BspT107I GGYRCC 2 cut(s) 4, 681
BspTNI GGTCTC 1 cut(s) 2617
BsrBI CCGCTC 1 cut(s) 237
BsrDI GCAATG 4 cut(s) 377, 1108, 1141, 2653
BsrFI RCCGGY 1 cut(s) 1709
BssAI RCCGGY 1 cut(s) 1709
BssECI CCNNGG 5 cut(s) 968, 1483, 1981, 2674, 2675
BssNAI GTATAC 1 cut(s) 1063
BssNI GRCGYC 1 cut(s) 2164
BssSI CACGAG 2 cut(s) 1437, 1593
BssT1I CCWWGG 2 cut(s) 1483, 1981
Bst1107I GTATAC 1 cut(s) 1063
Bst2BI CACGAG 2 cut(s) 1437, 1593
Bst2UI CCWGG 5 cut(s) 970, 1405, 1622, 2213, 2676
Bst4CI ACNGT 6 cut(s) 171, 686, 701, 1189, 2426, 2659
Bst6I CTCTTC 3 cut(s) 51, 1091, 3046
BstACI GRCGYC 1 cut(s) 2164
BstAPI GCANNNNNTGC 2 cut(s) 620, 2648
BstBAI YACGTR 1 cut(s) 1508
BstBI TTCGAA 3 cut(s) 165, 842, 2591
BstC8I GCNNGC 7 cut(s) 504, 531, 796, 1294, 1641, 1820, 2644
BstDEI CTNAG 9 cut(s) 42, 362, 551, 974, 1258, 1548, 1693, 2667, 2865
BstDSI CCRYGG 1 cut(s) 1483
BstENI CCTNNNNNAGG 2 cut(s) 1557, 1560
BstFNI CGCG 1 cut(s) 2538
BstMAI GTCTC 7 cut(s) 810, 1076, 1373, 1953, 2030, 2617, 2868
BstMCI CGRYCG 1 cut(s) 715
BstNI CCWGG 5 cut(s) 970, 1405, 1622, 2213, 2676
BstNSI RCATGY 4 cut(s) 529, 618, 1069, 2507
BstSCI CCNGG 5 cut(s) 968, 1403, 1620, 2211, 2674
BstSFI CTRYAG 1 cut(s) 2410
BstSLI GKGCMC 2 cut(s) 684, 1052
BstUI CGCG 1 cut(s) 2538
BstV1I GCAGC 4 cut(s) 425, 1655, 2424, 2651
BstV2I GAAGAC 3 cut(s) 1344, 2427, 2595
BstX2I RGATCY 4 cut(s) 1121, 2071, 2239, 3028
BstYI RGATCY 4 cut(s) 1121, 2071, 2239, 3028
BstZ17I GTATAC 1 cut(s) 1063
BsuI GTATCC 3 cut(s) 58, 321, 2012
BsuRI GGCC 8 cut(s) 148, 520, 549, 1296, 1914, 2211, 2580, 3047
BtgI CCRYGG 1 cut(s) 1483
BtrI CACGTC 1 cut(s) 1571
BtsI GCAGTG 4 cut(s) 1052, 1453, 1716, 2770
BtsIMutI CAGTG 7 cut(s) 1052, 1116, 1333, 1453, 1716, 2365, 2770
BveI ACCTGC 2 cut(s) 519, 1439
Cac8I GCNNGC 7 cut(s) 504, 531, 796, 1294, 1641, 1820, 2644
Cfr10I RCCGGY 1 cut(s) 1709
Cfr13I GGNCC 4 cut(s) 146, 1038, 1139, 1565
CseI GACGC 1 cut(s) 2153
Csp6I GTAC 5 cut(s) 1286, 1697, 1884, 1895, 2121
CspAI ACCGGT 1 cut(s) 1709
CviQI GTAC 5 cut(s) 1286, 1697, 1884, 1895, 2121
DdeI CTNAG 9 cut(s) 42, 362, 551, 974, 1258, 1548, 1693, 2667, 2865
DraI TTTAAA 2 cut(s) 21, 1239
EaeI YGGCCR 5 cut(s) 1294, 1912, 2209, 2578, 3045
Eam1104I CTCTTC 3 cut(s) 51, 1091, 3046
EarI CTCTTC 3 cut(s) 51, 1091, 3046
EciI GGCGGA 1 cut(s) 1892
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 2 cut(s) 1483, 1981
Eco24I GRGCYC 1 cut(s) 598
Eco31I GGTCTC 1 cut(s) 2617
Eco47I GGWCC 3 cut(s) 1038, 1139, 1565
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 2 cut(s) 911, 2723
Eco72I CACGTG 1 cut(s) 1508
Eco88I CYCGRG 2 cut(s) 1129, 1557
EcoICRI GAGCTC 1 cut(s) 596
EcoNI CCTNNNNNAGG 2 cut(s) 1557, 1560
EcoO109I RGGNCCY 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 2747
EcoRII CCWGG 5 cut(s) 968, 1403, 1620, 2211, 2674
EcoT14I CCWWGG 2 cut(s) 1483, 1981
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 2 cut(s) 1483, 1981
Esp3I CGTCTC 1 cut(s) 2868
FaqI GGGAC 5 cut(s) 407, 951, 1027, 2692, 2953
FbaI TGATCA 3 cut(s) 535, 1969, 2029
FblI GTMKAC 1 cut(s) 1062
Fnu4HI GCNGC 4 cut(s) 414, 1644, 2413, 2640
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 4 cut(s) 414, 1644, 2413, 2640
FspBI CTAG 5 cut(s) 207, 795, 1035, 2397, 2979
GluI GCNGC 4 cut(s) 414, 1644, 2413, 2640
GsaI CCCAGC 3 cut(s) 1779, 2632, 2845
GsuI CTGGAG 5 cut(s) 108, 960, 1062, 2907, 2982
HaeIII GGCC 8 cut(s) 148, 520, 549, 1296, 1914, 2211, 2580, 3047
HapII CCGG 2 cut(s) 1710, 2581
HgaI GACGC 1 cut(s) 2153
Hin1I GRCGYC 1 cut(s) 2164
HincII GTYRAC 1 cut(s) 1603
HindII GTYRAC 1 cut(s) 1603
HindIII AAGCTT 1 cut(s) 341
HpaI GTTAAC 1 cut(s) 1603
HpaII CCGG 2 cut(s) 1710, 2581
HphI GGTGA 4 cut(s) 476, 500, 2438, 2537
Hpy166II GTNNAC 8 cut(s) 697, 806, 985, 1063, 1142, 1568, 1603, 2197
Hpy8I GTNNAC 8 cut(s) 697, 806, 985, 1063, 1142, 1568, 1603, 2197
Hpy99I CGWCG 2 cut(s) 2139, 2463
HpyCH4III ACNGT 6 cut(s) 171, 686, 701, 1189, 2426, 2659
HpyCH4IV ACGT 6 cut(s) 1308, 1498, 1507, 1570, 1908, 2874
HpyF3I CTNAG 9 cut(s) 42, 362, 551, 974, 1258, 1548, 1693, 2667, 2865
HpySE526I ACGT 6 cut(s) 1308, 1498, 1507, 1570, 1908, 2874
Hsp92I GRCGYC 1 cut(s) 2164
Ksp22I TGATCA 3 cut(s) 535, 1969, 2029
KspAI GTTAAC 1 cut(s) 1603
LguI GCTCTTC 1 cut(s) 1091
LmnI GCTCC 5 cut(s) 234, 601, 941, 1617, 2926
Lsp1109I GCAGC 4 cut(s) 425, 1655, 2424, 2651
MaeI CTAG 5 cut(s) 207, 795, 1035, 2397, 2979
MaeII ACGT 6 cut(s) 1308, 1498, 1507, 1570, 1908, 2874
MbiI CCGCTC 1 cut(s) 237
MflI RGATCY 4 cut(s) 1121, 2071, 2239, 3028
MhlI GDGCHC 5 cut(s) 406, 598, 684, 1052, 2149
MlsI TGGCCA 3 cut(s) 1296, 1914, 2211
MluNI TGGCCA 3 cut(s) 1296, 1914, 2211
MlyI GAGTC 5 cut(s) 99, 1358, 1955, 2498, 2741
MmeI TCCRAC 3 cut(s) 373, 1474, 1481
Mox20I TGGCCA 3 cut(s) 1296, 1914, 2211
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 3 cut(s) 1296, 1914, 2211
MslI CAYNNNNRTG 3 cut(s) 687, 1302, 1610
Msp20I TGGCCA 3 cut(s) 1296, 1914, 2211
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 2 cut(s) 1710, 2581
MspR9I CCNGG 5 cut(s) 970, 1405, 1622, 2213, 2676
Mva1269I GAATGC 3 cut(s) 415, 1237, 1681
MvaI CCWGG 5 cut(s) 970, 1405, 1622, 2213, 2676
MvnI CGCG 1 cut(s) 2538
NcoI CCATGG 1 cut(s) 1483
NheI GCTAGC 1 cut(s) 794
NlaIV GGNNCC 9 cut(s) 6, 445, 683, 1123, 1464, 1619, 2295, 2922, 3030
NmuCI GTSAC 7 cut(s) 138, 248, 946, 1195, 1412, 1712, 2733
NspI RCATGY 4 cut(s) 529, 618, 1069, 2507
NspV TTCGAA 3 cut(s) 165, 842, 2591
PaeR7I CTCGAG 2 cut(s) 1129, 1557
PaqCI CACCTGC 1 cut(s) 519
PasI CCCWGGG 1 cut(s) 2675
PciSI GCTCTTC 1 cut(s) 1091
PcsI WCGNNNNNNNCGW 4 cut(s) 682, 892, 1504, 2650
PctI GAATGC 3 cut(s) 415, 1237, 1681
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 5 cut(s) 2062, 2084, 2327, 2717, 3035
PflFI GACNNNGTC 1 cut(s) 1367
PflMI CCANNNNNTGG 4 cut(s) 383, 1458, 2289, 2635
PinAI ACCGGT 1 cut(s) 1709
PkrI GCNGC 4 cut(s) 415, 1645, 2414, 2641
Ple19I CGATCG 1 cut(s) 715
PleI GAGTC 5 cut(s) 98, 1358, 1954, 2497, 2740
PmaCI CACGTG 1 cut(s) 1508
PmlI CACGTG 1 cut(s) 1508
PpsI GAGTC 5 cut(s) 98, 1358, 1954, 2497, 2740
Ppu21I YACGTR 1 cut(s) 1508
PpuMI RGGWCCY 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 1038
Psp6I CCWGG 5 cut(s) 968, 1403, 1620, 2211, 2674
PspCI CACGTG 1 cut(s) 1508
PspFI CCCAGC 3 cut(s) 1775, 2628, 2841
PspGI CCWGG 5 cut(s) 968, 1403, 1620, 2211, 2674
PspN4I GGNNCC 9 cut(s) 6, 445, 683, 1123, 1464, 1619, 2295, 2922, 3030
PspPI GGNCC 4 cut(s) 146, 1038, 1139, 1565
PspPPI RGGWCCY 1 cut(s) 1038
PspXI VCTCGAGB 2 cut(s) 1129, 1557
PsrI GAACNNNNNNTAC 6 cut(s) 1254, 1286, 1302, 1334, 2802, 2834
PstI CTGCAG 1 cut(s) 2414
PsuI RGATCY 4 cut(s) 1121, 2071, 2239, 3028
PsyI GACNNNGTC 1 cut(s) 1367
PvuI CGATCG 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 5 cut(s) 1287, 1698, 1885, 1896, 2122
RsaNI GTAC 5 cut(s) 1286, 1697, 1884, 1895, 2121
RseI CAYNNNNRTG 3 cut(s) 687, 1302, 1610
SacI GAGCTC 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 1091
SatI GCNGC 4 cut(s) 414, 1644, 2413, 2640
Sau96I GGNCC 4 cut(s) 146, 1038, 1139, 1565
ScaI AGTACT 1 cut(s) 1896
SchI GAGTC 5 cut(s) 99, 1358, 1955, 2498, 2741
ScrFI CCNGG 5 cut(s) 970, 1405, 1622, 2213, 2676
SduI GDGCHC 5 cut(s) 406, 598, 684, 1052, 2149
SfcI CTRYAG 1 cut(s) 2410
Sfr274I CTCGAG 2 cut(s) 1129, 1557
SfuI TTCGAA 3 cut(s) 165, 842, 2591
SinI GGWCC 3 cut(s) 1038, 1139, 1565
SlaI CTCGAG 2 cut(s) 1129, 1557
SmiMI CAYNNNNRTG 3 cut(s) 687, 1302, 1610
SmlI CTYRAG 2 cut(s) 1129, 1557
SmoI CTYRAG 2 cut(s) 1129, 1557
SsiI CCGC 3 cut(s) 237, 1630, 1877
SspI AATATT 1 cut(s) 2380
SspMI CTAG 5 cut(s) 207, 795, 1035, 2397, 2979
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 5 cut(s) 968, 1403, 1620, 2211, 2674
StyI CCWWGG 2 cut(s) 1483, 1981
TaaI ACNGT 6 cut(s) 171, 686, 701, 1189, 2426, 2659
TaiI ACGT 6 cut(s) 1311, 1501, 1510, 1573, 1911, 2877
TaqII GACCGA 1 cut(s) 705
TatI WGTACW 4 cut(s) 1285, 1696, 1894, 2120
TfiI GAWTC 5 cut(s) 2062, 2084, 2327, 2717, 3035
TscAI CASTG 7 cut(s) 1059, 1123, 1333, 1453, 1723, 2365, 2770
TseFI GTSAC 7 cut(s) 138, 248, 946, 1195, 1412, 1712, 2733
TseI GCWGC 4 cut(s) 413, 1643, 2412, 2639
Tsp45I GTSAC 7 cut(s) 138, 248, 946, 1195, 1412, 1712, 2733
TspDTI ATGAA 7 cut(s) 533, 671, 825, 1344, 2192, 2364, 2709
TspRI CASTG 7 cut(s) 1059, 1123, 1333, 1453, 1723, 2365, 2770
Tth111I GACNNNGTC 1 cut(s) 1367
Van91I CCANNNNNTGG 4 cut(s) 383, 1458, 2289, 2635
VpaK11BI GGWCC 3 cut(s) 1038, 1139, 1565
XagI CCTNNNNNAGG 2 cut(s) 1557, 1560
XapI RAATTY 7 cut(s) 540, 1399, 1662, 2180, 2353, 2747, 3050
XbaI TCTAGA 1 cut(s) 2978
XceI RCATGY 4 cut(s) 529, 618, 1069, 2507
XcmI CCANNNNNNNNNTGG 1 cut(s) 1490
XhoI CTCGAG 2 cut(s) 1129, 1557
XmiI GTMKAC 1 cut(s) 1062
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 5 cut(s) 207, 795, 1035, 2397, 2979
ZrmI AGTACT 1 cut(s) 1896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.