FvH4_5g39310

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003305
Physical Location & Seq
Forward (+)
29041565 .. 29055159
13595 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39310.t1

Sequence Viewer

Length: 4653 bp
ATGGATTCTCGGAAATGCACTCCGTTTGGTGGTGCAAATTCTCTTAATATGGCACCTTCAAATATATTAAGTAAGGTGAATGAGAGGGCTAAATTTGAAAAAGAAGAGAGGGATACAGGTCACACTGTTGAGGCTGGAGCAGATGTAGATATTAAAGAAGTATACTTTCTGATTATGCACTTTCTATCCGTTGGGCCATGTCAGAAGACTTTTGAACAACTTGCGAATGATCTTTTGGAACATCAACTCCTGCCTAGAAGGTATCATGCATGGTTTTCAAGAAGCGGTATAAGCAATAGCAATGATAATGATAGTAGTAGCTCTTTCCCACTGAGTTACAACAAGTTGGTTGAAAGGTATCCTCATATAGAGAACGATCACTTGGTAAAGCTTCTAAAGCAACTGATGTTGAGTATAGCTACTCCTTTGCATGGCAAGTTTGGAAGAAATACTCTGAATGCAGCTGACGTCCCTACATTGTTGGGAACCGGTTCTTTTTCGCTTCTGGACTGTGATAGGAATGTGGTGAATAAGCGAGTTAAGCCGCTTCCTGCTCACCTGCGTTGGCCTTACATGCAGGCTGGTCAAATTCATGGACTTGGTTTAAGGGAAATTGGAGGAGGTTTCACTAAGCATCATCGTGCACCATCCATTCGCTCTGCATGCTATGCCATTGCTAAACCATCAACTATGGTGCAAAAAATGAACAACAAAAAGAAGCTAAGGGGGCATCGTAATGCTGTCTATTGTGCCATTTTTGATCGGTCTGGAAGATATGTTATCACTGGATCGGATGATCGTCTTGTCAAGATTTGGTCAATGGAAACTGCACTTTGCTTGGCTAGTTGTCGTGGACACGAGGGTGACATTACTGACTTGGCTGTGAGTTCAAACAACACTTTGGTGGCATCTGCTTCAAATGATTTTGTTATTCGAGTTTGGCGTTTGCCAGATGGATGTCCCATTTCCGTTCTACAGGGCCATACTGGAGCTGTGACTGCTATTGCATTCAGTCCAAGGCCTAATGCAATTTACCAACTTTTATCGTCATCAGATGATGGGACTTGTCGAATTTGGGATGCTAGGTTCTCCCAGTTCCCTCCACGGATATTCATGCCAAAACCTTCGGACCCTTTAACAGGGAAGAGCAATGGTATTTCAAGTCTTGGAACCTCATCAAATAGTGGCCCACAAGGCCATCAAATACTTTGTTGTGCTTACAATGCTAGTGGAACTGTTTTTGTCACCGGTAGCTCTGACACTTTTGCTCGGGTATGGAGTGCTTTGAAATCTAACTCAGATGACTCAGAACAACCAATACATGAGATGGATGTATTATCTGGCCATGAGAATGATGTCAATTATGTGCAATTCAGTGGTTGTGCCCCTTTATCAAAATCTTCAATTTCTGACTCTTTGAAGGAGGAGAATGTTATGAAGTCCAAGAATTCATGGTTTTGCCATAACAACATAGTTACCTGCTCACGTGATGGCAGTGCCATTATATGGGTTCCAAAATCACACAGATCGCATGGCAAGTTTGGACGATGGATCCGTGCTTACCATCTCAAAGTTCCACCTCCCCCACTGCCTCCTCAACCTCCTCGAGGTGGCCCACGTCAGAGATTTCTTCCTACCCCTCGTGGTGTTAACATGATTATATGGAGCCTGGATAACCGCTTTGTGCTTGCTGCTATAATGGATTGCAGAATATGCGTGTGGAATGCTGTTGATGGTAGTTTAGTACATTCTTTGACTGGTCATAATGCATCTTCTTATGTTTTGGATGTTCATCCGTTTAATCCTCGGATTGCTATGAGTGCTGGGTATGATGGACAAACAATCATATGGGATATCTGGGAAGGAACACCCATAAAGATTTATGAAGTTGGACATGTTAAGTTGGTTGATGGGAAGTTTTCCGCGGATGGGACATCCATTGTACTTTCAGATGATGTGGGACAGATATATTTAATAAACACAGGTGAAGGAGAGTCCCAAAAAGATGCTAAATATGACCAGTTCTTCCTGGGAGATTATCGCCCCCTTGTGCGGGATAATGCTGGACATCTTCTTGATCAGGAGACACAGCTTCCGCCTTATCGAAGGAATCTTCAAGATCTTATCTGTGACTCAAGTATGATTCCATATCCGGAGCCATATCAGAGTCAATACCAGCGGCGTCGTCTTGGTGCATTGGGAATGGAGTGGAAACCTTCATCAGTAAATTTTGCAGTTGGCCTGGATATTGGTGCAGGCATGGACTATCACTTGCCTCCGTTGCCTGATTGGGAGAGAGTGATAGAGCCACTTCCAGATTTCATCGATGCCATGCTTTGGGAGCCAGAAAATGAGTTCATAAGTGAAGATACTGATTCAGATTTTCATGTTACTGAGGAAAATTCCAGTGAAGAGGATAGAGCAAATATTAGCACCAGTTCCTCCAGTGATCCAGAATGCAGTGCAGAAGACAGTGAAGTTGAATGCAGCCATAAGGATGGTCTTCGCAGATCAAGAAGAAAAACACAAAAGGTTACCTCTTCTGAGAGACGTGGGAAGAAAAGGAATTTGAGTGAGGAAGATGGCATTATATCTGGGAGTAACAGAATTAAAAATCCAAAAGGTGGCCGAAAAGTTCCAAAGAGGAACTCTGGAGCAAAAAAGTCAAGACCTCAGAGGGTTGCAGCACGGAATGCTCGAAATGTGCTTTCTCAGAACCCCGGAACATCTACAGATGGAGAAGAAGATGACTGGGAAGCTGACTCATCAGATAGTGAGCCGCGTCAGAAAAAGTTCCACAGTCAAAGCAATGAGTTTGATGGAAGCTATAAGAATATGCAAGAGATACAGAATAAAGAAAAACCTTCCCTACATGAGATACCTGATATCGCCAATCCTCTTGCTGTTCCTGAGTCTCAAACAAATGTTCAAAGAAAAAGATTGGTTTTGAAGCTTCCGCTCCGTCGTGATTCAAAGAAACAAGAGGCTCTACAGGATTCTTCATCTTCTAGATATCATGAAGTCGGTCAAGATAAGAAGATTAATAATAGCTGTGTGGATGGAGCTTCATCTTCGGCAGATGCCCTTGATGTGCAGTTCTCTGCAAATCTCGTGAGTAATGTGTTTACAGATCCTGGGAAAACCATAGAGGCTGGGAATCCTGTGGAGGCATCTTCATGTGATGTGGAGAACAAAATTAGGTGGGGAGAGGTGAAAAGCCGCACACCAAAGCATGCAAGAAAGCACTCTGATGAATCAATGGATAATGCTCCCCTTAAGTTTCTTGCACGGGAAGAAATAGGTCCTGGAACCTTAATGCATGGAAATCCTTCATGCATGGACCGGAATGTGAATCTGGAAGAAGTACCAGAAATGAGTGGAGGTTCTGGCACATCAAGTTCACGGAGATTTTTCTGCAAGGATAGGACAAAAGCAGAAGGCTTTGATGGTAAATTGGAAGAAAATACTTCTCGGAGCAATGATCATTATGATGCAGGAATGAATCTCCCTGAAGCTGCAACTGATTCAGCACGCAGGCTAAGAACCATAAAGATCAAGGCGACTTCACGTGAACTGGACTCTTTGAGCCGTATCCCTAAGTCGAGAGTGGTCCATCAAAGGACATCAATAGATGCAGAAGATTCCACTGCCAAAGTCCGTGATACAAGACTTCAGAGATCAATGTCTACTAGAAATCAGCTGAACCAAAGTTTGTCAACTCAAAGGATGTTGACTAACCCTGTCGGAAAATTTTCATGGCTGATGTTGTCGAAACACGACGAAGGTTACCGTTATATTCCTCAGCTAGGTGATGAAGTTGCATACTTGAGACAGGGTCATCAAGAGTATATGGACTTGGCTTTGAAGTCGGATCACGGCCCTTGGGGTCCGTGGGGATCAGTGAAGGAAAAAATCAGAGCTGTGGAAATCTGCAAGGTTGTAGGCCTCGACTATGATACCATGCCTGGTTCAGGAGAAAGCTGTAGCAAGATCTTATTCAGATTTGTGGAGCCTTCTTCTGCTCTGTATGGTAAAACCTTTAAATTGACAATGCCTGAAATTGACTTTAATGACTTCATAGTTGAGAAAAGCTGGTATGATGCTGCCATTGGAAGAAACTGGGCAGTCGGAGAACACTGTGATGTCTGGTGGAGGGACTCAGAGTTAGAGGGAGGCGGTGCGTGGTGGCAAGGCCAAATTGTGCGCTGTCAGGAAAAATCTCATGAGTTTCCTGATAGCCCGTGGTTAAGATATGAGGTTAGCTACGAGAATGAAGATGATTTACCTCATAGGCATTGTCCTTGGGAACTGCATGATGTGTCCATGTCATGGGAAGCACCGCATATTGATCATGAAAGCAGAGATAAGCTGCTTCACTTTTTCACTAAATCAGAAAGAAAGGACTCTGAGGCCATCCAAGAAATGAATCGAGCTGTTCAGAAGGTGGATTTCTGCAACAGCTTTCCTGTTCCATTGTTCCCTGAACTAATCGAAGCAAGGTTAAGGAATGACTATTATAGGAGCTTGGAAGCAGTGAAGCATGACATAACCCAGATGCTAGAAAACGCTCGGCATTACTTCAAGAGAAATGAATTGCAAGCCAGGATTAAGCACATTTCAAAATGGTTTAAGAAAAAAATTTCTAGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1551

Amino Acids

174.58

Weight (kDa)

6.91

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRWD1_N PF25437 41 - 138 3.2e-32 BRWD1-like, N-terminal domain
Beta-prop_TEP1_2nd PF25047 230 - 361 1.7e-12 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 232 - 340 5.1e-21 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 232 - 362 4.9e-15 CDC20/Fizzy WD40 domain
WDR55 PF24796 233 - 363 1.1e-07 WDR55
Beta-prop_WDR5 PF25175 233 - 365 4.2e-27 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 233 - 322 1.6e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 233 - 361 1.7e-23 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 236 - 315 3.4e-11 Prp19 WD40 domain
WD40_Gbeta PF25391 237 - 365 3.5e-14 G protein beta WD-40 repeat protein
WD40 PF00400 238 - 273 1.3e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 238 - 315 4.3e-11 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 241 - 362 2.6e-11 WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 243 - 359 1.6e-07 MABP1/WDR62 second WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 275 - 366 6.9e-08 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 279 - 314 3.4e-07 WD domain, G-beta repeat
EIF3I PF24805 284 - 362 8.1e-06 EIF3I
Beta-prop_THOC3 PF25174 286 - 364 1.4e-11 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 289 - 362 5.9e-12 WDHD1 first WD40 domain
WD40_Prp19 PF24814 302 - 364 1.9e-06 Prp19 WD40 domain
Beta-prop_SCAP PF24017 302 - 360 3.1e-06 SCAP Beta-propeller
WD40 PF00400 320 - 360 7.4e-09 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 547 - 666 3.8e-11 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 550 - 673 1.2e-12 THOC3 beta-propeller domain
BRWD_AD PF25313 1263 - 1441 9.5e-56 BRWD/PHIP ancillary domain-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 567
AatII GACGTC 1 cut(s) 471
AbsI CCTCGAGG 1 cut(s) 1605
Acc36I ACCTGC 2 cut(s) 567, 1487
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 4 cut(s) 1506, 2337, 2624, 4329
AccBSI CCGCTC 1 cut(s) 2959
AccI GTMKAC 2 cut(s) 162, 3686
AccII CGCG 2 cut(s) 1925, 2782
AccIII TCCGGA 1 cut(s) 2152
AclWI GGATC 7 cut(s) 796, 1546, 1559, 2444, 3125, 3879, 3904
AcoI YGGCCR 2 cut(s) 1342, 2626
AcuI CTGAAG 2 cut(s) 3531, 3656
AcvI CACGTG 2 cut(s) 1487, 3569
AcyI GRCGYC 2 cut(s) 468, 2182
AfaI GTAC 3 cut(s) 1746, 1944, 3366
AflII CTTAAG 1 cut(s) 3275
AflIII ACRYGT 1 cut(s) 1894
AgeI ACCGGT 2 cut(s) 488, 1247
AjiI CACGTC 2 cut(s) 1619, 2552
AjnI CCWGG 7 cut(s) 1668, 2028, 2241, 3133, 3304, 3964, 4601
AjuI GAANNNNNNNTTGG 4 cut(s) 218, 250, 365, 397
AleI CACNNNNGTG 2 cut(s) 861, 902
AloI GAACNNNNNNTCC 4 cut(s) 231, 263, 1070, 1102
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 4 cut(s) 2078, 2542, 2919, 3823
Alw44I GTGCAC 1 cut(s) 642
AlwI GGATC 7 cut(s) 796, 1546, 1559, 2444, 3125, 3879, 3904
AlwNI CAGNNNCTG 1 cut(s) 3134
Ama87I CYCGRG 2 cut(s) 1269, 1605
Aor13HI TCCGGA 1 cut(s) 2152
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 7 cut(s) 461, 1691, 2487, 2684, 3515, 4103, 4369
AseI ATTAAT 1 cut(s) 3042
AsiGI ACCGGT 2 cut(s) 488, 1247
Asp700I GAANNNNTTC 4 cut(s) 490, 2792, 3328, 3751
AspLEI GCGC 1 cut(s) 4206
AsuC2I CCSGG 1 cut(s) 2721
AsuHPI GGTGA 8 cut(s) 88, 538, 548, 875, 1237, 1997, 3223, 3821
AvaI CYCGRG 2 cut(s) 1269, 1605
AvaII GGWCC 5 cut(s) 1129, 3302, 3340, 3610, 3887
BaeGI GKGCMC 2 cut(s) 646, 1387
BalI TGGCCA 1 cut(s) 1344
BamHI GGATCC 1 cut(s) 1551
BanI GGYRCC 1 cut(s) 52
BarI GAAGNNNNNNTAC 2 cut(s) 4266, 4298
BauI CACGAG 3 cut(s) 857, 1641, 3110
BbrPI CACGTG 2 cut(s) 1487, 3569
BbsI GAAGAC 3 cut(s) 212, 2475, 2495
Bbv12I GWGCWC 1 cut(s) 646
BbvCI CCTCAGC 1 cut(s) 3801
BbvI GCAGC 7 cut(s) 473, 1678, 2499, 2696, 3502, 4090, 4356
BceAI ACGGC 2 cut(s) 3573, 3892
BciT130I CCWGG 7 cut(s) 1670, 2030, 2243, 3135, 3306, 3966, 4603
BciVI GTATCC 3 cut(s) 106, 369, 3602
BclI TGATCA 3 cut(s) 2077, 3481, 4348
BcnI CCSGG 1 cut(s) 2721
BcoDI GTCTC 4 cut(s) 2078, 2542, 2919, 3823
BfaI CTAG 9 cut(s) 255, 843, 1083, 1227, 3009, 3690, 3806, 4559, 4644
BfmI CTRYAG 4 cut(s) 974, 2730, 2990, 3982
BfrI CTTAAG 1 cut(s) 3275
BfuAI ACCTGC 2 cut(s) 567, 1487
BfuI GTATCC 3 cut(s) 106, 369, 3602
BglI GCCNNNNNGGC 1 cut(s) 1194
BglII AGATCT 2 cut(s) 2119, 3990
Bme1390I CCNGG 8 cut(s) 1670, 2030, 2243, 2721, 3135, 3306, 3966, 4603
Bme18I GGWCC 5 cut(s) 1129, 3302, 3340, 3610, 3887
BmeT110I CYCGRG 2 cut(s) 1269, 1605
BmgBI CACGTC 2 cut(s) 1619, 2552
BmrFI CCNGG 8 cut(s) 1670, 2030, 2243, 2721, 3135, 3306, 3966, 4603
BmrI ACTGGG 3 cut(s) 1087, 2761, 4129
BmuI ACTGGG 3 cut(s) 1087, 2761, 4129
BpiI GAAGAC 3 cut(s) 212, 2475, 2495
BpmI CTGGAG 4 cut(s) 156, 1008, 2428, 2673
Bpu10I CCTNAGC 2 cut(s) 722, 3801
BpuEI CTTGAG 2 cut(s) 2119, 3847
BpuMI CCSGG 1 cut(s) 2721
Bsa29I ATCGAT 1 cut(s) 2325
BsaAI YACGTR 2 cut(s) 1487, 3569
BsaBI GATNNNNATC 1 cut(s) 1791
BsaHI GRCGYC 2 cut(s) 468, 2182
BsaWI WCCGGW 4 cut(s) 488, 1247, 2152, 3342
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 231, 261
Bse118I RCCGGY 2 cut(s) 488, 1247
Bse3DI GCAATG 5 cut(s) 307, 672, 1156, 2815, 3484
Bse8I GATNNNNATC 1 cut(s) 1791
BseAI TCCGGA 1 cut(s) 2152
BseBI CCWGG 7 cut(s) 1670, 2030, 2243, 3135, 3306, 3966, 4603
BseCI ATCGAT 1 cut(s) 2325
BseJI GATNNNNATC 1 cut(s) 1791
BseMI GCAATG 5 cut(s) 307, 672, 1156, 2815, 3484
BseRI GAGGAG 4 cut(s) 633, 1439, 1584, 1593
BseSI GKGCMC 2 cut(s) 646, 1387
BseXI GCAGC 7 cut(s) 473, 1678, 2499, 2696, 3502, 4090, 4356
BseYI CCCAGC 2 cut(s) 1823, 3152
BsgI GTGCAG 4 cut(s) 813, 2274, 2484, 3113
Bsh1236I CGCG 2 cut(s) 1925, 2782
BshNI GGYRCC 1 cut(s) 52
BshTI ACCGGT 2 cut(s) 488, 1247
BshVI ATCGAT 1 cut(s) 2325
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 2 cut(s) 1269, 1605
BsiSI CCGG 5 cut(s) 489, 1248, 2153, 2721, 3343
BslFI GGGAC 7 cut(s) 455, 945, 1075, 1945, 1974, 1981, 4169
BsmAI GTCTC 4 cut(s) 2078, 2542, 2919, 3823
BsmBI CGTCTC 1 cut(s) 2542
BsmFI GGGAC 7 cut(s) 455, 945, 1075, 1945, 1974, 1981, 4169
BsmI GAATGC 6 cut(s) 463, 1007, 1729, 2462, 2489, 2698
BsoBI CYCGRG 2 cut(s) 1269, 1605
Bsp1286I GDGCHC 2 cut(s) 646, 1387
Bsp13I TCCGGA 1 cut(s) 2152
BspDI ATCGAT 1 cut(s) 2325
BspEI TCCGGA 1 cut(s) 2152
BspFNI CGCG 2 cut(s) 1925, 2782
BspHI TCATGA 3 cut(s) 3016, 4222, 4351
BspMI ACCTGC 2 cut(s) 567, 1487
BspPI GGATC 7 cut(s) 796, 1546, 1559, 2444, 3125, 3879, 3904
BspQI GCTCTTC 1 cut(s) 1139
BspT107I GGYRCC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 3275
BsrBI CCGCTC 1 cut(s) 2959
BsrDI GCAATG 5 cut(s) 307, 672, 1156, 2815, 3484
BsrFI RCCGGY 2 cut(s) 488, 1247
BssAI RCCGGY 2 cut(s) 488, 1247
BssNAI GTATAC 1 cut(s) 163
BssNI GRCGYC 2 cut(s) 468, 2182
BssSI CACGAG 3 cut(s) 857, 1641, 3110
BssT1I CCWWGG 3 cut(s) 1016, 3881, 4301
Bst1107I GTATAC 1 cut(s) 163
Bst2BI CACGAG 3 cut(s) 857, 1641, 3110
Bst2UI CCWGG 7 cut(s) 1670, 2030, 2243, 3135, 3306, 3966, 4603
Bst4CI ACNGT 7 cut(s) 127, 512, 1237, 2474, 2801, 3791, 4139
Bst6I CTCTTC 4 cut(s) 99, 1139, 2406, 2545
BstACI GRCGYC 2 cut(s) 468, 2182
BstAFI CTTAAG 1 cut(s) 3275
BstAPI GCANNNNNTGC 3 cut(s) 668, 1713, 2693
BstBAI YACGTR 2 cut(s) 1487, 3569
BstC8I GCNNGC 8 cut(s) 579, 664, 1689, 2257, 3234, 3532, 3536, 4599
BstDSI CCRYGG 4 cut(s) 1103, 1923, 3890, 4241
BstEII GGTNACC 2 cut(s) 2533, 3785
BstENI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3804, 3969
BstFNI CGCG 2 cut(s) 1925, 2782
BstHHI GCGC 1 cut(s) 4206
BstMAI GTCTC 4 cut(s) 2078, 2542, 2919, 3823
BstNI CCWGG 7 cut(s) 1670, 2030, 2243, 3135, 3306, 3966, 4603
BstNSI RCATGY 4 cut(s) 577, 666, 1898, 3236
BstPI GGTNACC 2 cut(s) 2533, 3785
BstSCI CCNGG 8 cut(s) 1668, 2028, 2241, 2719, 3133, 3304, 3964, 4601
BstSFI CTRYAG 4 cut(s) 974, 2730, 2990, 3982
BstSLI GKGCMC 2 cut(s) 646, 1387
BstUI CGCG 2 cut(s) 1925, 2782
BstV1I GCAGC 7 cut(s) 473, 1678, 2499, 2696, 3502, 4090, 4356
BstV2I GAAGAC 3 cut(s) 212, 2475, 2495
BstX2I RGATCY 4 cut(s) 1551, 2119, 3130, 3990
BstXI CCANNNNNNTGG 1 cut(s) 2498
BstYI RGATCY 4 cut(s) 1551, 2119, 3130, 3990
BstZ17I GTATAC 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 2325
BsuI GTATCC 3 cut(s) 106, 369, 3602
BsuTUI ATCGAT 1 cut(s) 2325
BtgI CCRYGG 4 cut(s) 1103, 1923, 3890, 4241
BtrI CACGTC 2 cut(s) 1619, 2552
BtsI GCAGTG 5 cut(s) 1501, 1586, 2467, 3645, 4539
BveI ACCTGC 2 cut(s) 567, 1487
Cac8I GCNNGC 8 cut(s) 579, 664, 1689, 2257, 3234, 3532, 3536, 4599
CaiI CAGNNNCTG 1 cut(s) 3134
CciI TCATGA 3 cut(s) 3016, 4222, 4351
CfoI GCGC 1 cut(s) 4206
Cfr10I RCCGGY 2 cut(s) 488, 1247
Cfr42I CCGCGG 1 cut(s) 1926
ClaI ATCGAT 1 cut(s) 2325
CseI GACGC 2 cut(s) 2171, 2771
Csp6I GTAC 3 cut(s) 1745, 1943, 3365
CspAI ACCGGT 2 cut(s) 488, 1247
CspCI CAANNNNNGTGG 2 cut(s) 1210, 1245
CviQI GTAC 3 cut(s) 1745, 1943, 3365
DraI TTTAAA 1 cut(s) 4042
EaeI YGGCCR 2 cut(s) 1342, 2626
Eam1104I CTCTTC 4 cut(s) 99, 1139, 2406, 2545
EarI CTCTTC 4 cut(s) 99, 1139, 2406, 2545
EciI GGCGGA 1 cut(s) 2085
Eco130I CCWWGG 3 cut(s) 1016, 3881, 4301
Eco147I AGGCCT 2 cut(s) 1021, 3945
Eco32I GATATC 3 cut(s) 1855, 2887, 3014
Eco47I GGWCC 5 cut(s) 1129, 3302, 3340, 3610, 3887
Eco57I CTGAAG 2 cut(s) 3531, 3656
Eco72I CACGTG 2 cut(s) 1487, 3569
Eco88I CYCGRG 2 cut(s) 1269, 1605
Eco91I GGTNACC 2 cut(s) 2533, 3785
EcoNI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3804, 3969
EcoO109I RGGNCCY 1 cut(s) 3302
EcoO65I GGTNACC 2 cut(s) 2533, 3785
EcoRI GAATTC 1 cut(s) 1447
EcoRII CCWGG 7 cut(s) 1668, 2028, 2241, 3133, 3304, 3964, 4601
EcoRV GATATC 3 cut(s) 1855, 2887, 3014
EcoT14I CCWWGG 3 cut(s) 1016, 3881, 4301
EcoT22I ATGCAT 4 cut(s) 271, 1771, 3321, 3338
ErhI CCWWGG 3 cut(s) 1016, 3881, 4301
Esp3I CGTCTC 1 cut(s) 2542
FaqI GGGAC 7 cut(s) 455, 945, 1075, 1945, 1974, 1981, 4169
FauI CCCGC 1 cut(s) 2046
FauNDI CATATG 1 cut(s) 1847
FbaI TGATCA 3 cut(s) 2077, 3481, 4348
FblI GTMKAC 2 cut(s) 162, 3686
FspBI CTAG 9 cut(s) 255, 843, 1083, 1227, 3009, 3690, 3806, 4559, 4644
GlaI GCGC 1 cut(s) 4205
GsaI CCCAGC 2 cut(s) 1827, 3156
GsuI CTGGAG 4 cut(s) 156, 1008, 2428, 2673
HapII CCGG 5 cut(s) 489, 1248, 2153, 2721, 3343
HgaI GACGC 2 cut(s) 2171, 2771
HhaI GCGC 1 cut(s) 4206
Hin1I GRCGYC 2 cut(s) 468, 2182
Hin6I GCGC 1 cut(s) 4204
HinP1I GCGC 1 cut(s) 4204
HincII GTYRAC 3 cut(s) 1651, 3717, 3732
HindII GTYRAC 3 cut(s) 1651, 3717, 3732
HindIII AAGCTT 2 cut(s) 389, 2951
HpaI GTTAAC 1 cut(s) 1651
HpaII CCGG 5 cut(s) 489, 1248, 2153, 2721, 3343
HphI GGTGA 8 cut(s) 88, 538, 548, 875, 1237, 1997, 3223, 3821
Hpy99I CGWCG 3 cut(s) 2187, 2967, 3782
HpyCH4III ACNGT 7 cut(s) 127, 512, 1237, 2474, 2801, 3791, 4139
HpyCH4IV ACGT 5 cut(s) 468, 1486, 1618, 2551, 3568
HpySE526I ACGT 5 cut(s) 468, 1486, 1618, 2551, 3568
Hsp92I GRCGYC 2 cut(s) 468, 2182
HspAI GCGC 1 cut(s) 4204
Kpn2I TCCGGA 1 cut(s) 2152
Ksp22I TGATCA 3 cut(s) 2077, 3481, 4348
KspAI GTTAAC 1 cut(s) 1651
KspI CCGCGG 1 cut(s) 1926
LguI GCTCTTC 1 cut(s) 1139
Lsp1109I GCAGC 7 cut(s) 473, 1678, 2499, 2696, 3502, 4090, 4356
MaeI CTAG 9 cut(s) 255, 843, 1083, 1227, 3009, 3690, 3806, 4559, 4644
MaeII ACGT 5 cut(s) 468, 1486, 1618, 2551, 3568
MbiI CCGCTC 1 cut(s) 2959
MflI RGATCY 4 cut(s) 1551, 2119, 3130, 3990
MhlI GDGCHC 2 cut(s) 646, 1387
MlsI TGGCCA 1 cut(s) 1344
MluNI TGGCCA 1 cut(s) 1344
MmeI TCCRAC 4 cut(s) 1870, 3724, 3849, 4108
Mox20I TGGCCA 1 cut(s) 1344
Mph1103I ATGCAT 4 cut(s) 271, 1771, 3321, 3338
MroI TCCGGA 1 cut(s) 2152
MroXI GAANNNNTTC 4 cut(s) 490, 2792, 3328, 3751
MscI TGGCCA 1 cut(s) 1344
Msp20I TGGCCA 1 cut(s) 1344
MspA1I CMGCKG 4 cut(s) 464, 1925, 2179, 3700
MspCI CTTAAG 1 cut(s) 3275
MspI CCGG 5 cut(s) 489, 1248, 2153, 2721, 3343
MspR9I CCNGG 8 cut(s) 1670, 2030, 2243, 2721, 3135, 3306, 3966, 4603
Mva1269I GAATGC 6 cut(s) 463, 1007, 1729, 2462, 2489, 2698
MvaI CCWGG 7 cut(s) 1670, 2030, 2243, 3135, 3306, 3966, 4603
MvnI CGCG 2 cut(s) 1925, 2782
NciI CCSGG 1 cut(s) 2721
NdeI CATATG 1 cut(s) 1847
NmeAIII GCCGAG 1 cut(s) 4549
NmuCI GTSAC 5 cut(s) 119, 863, 994, 1243, 2129
NsiI ATGCAT 4 cut(s) 271, 1771, 3321, 3338
NspI RCATGY 4 cut(s) 577, 666, 1898, 3236
OliI CACNNNNGTG 2 cut(s) 861, 902
PaeI GCATGC 2 cut(s) 666, 3236
PaeR7I CTCGAG 1 cut(s) 1605
PagI TCATGA 3 cut(s) 3016, 4222, 4351
PaqCI CACCTGC 1 cut(s) 567
PceI AGGCCT 2 cut(s) 1021, 3945
PciI ACATGT 1 cut(s) 1894
PciSI GCTCTTC 1 cut(s) 1139
PcsI WCGNNNNNNNCGW 3 cut(s) 940, 1552, 2695
PctI GAATGC 6 cut(s) 463, 1007, 1729, 2462, 2489, 2698
PdmI GAANNNNTTC 4 cut(s) 490, 2792, 3328, 3751
PflFI GACNNNGTC 1 cut(s) 3834
PflMI CCANNNNNTGG 4 cut(s) 1506, 2337, 2624, 4329
PfoI TCCNGGA 1 cut(s) 3304
PinAI ACCGGT 2 cut(s) 488, 1247
PmaCI CACGTG 2 cut(s) 1487, 3569
PmlI CACGTG 2 cut(s) 1487, 3569
Ppu21I YACGTR 2 cut(s) 1487, 3569
PpuMI RGGWCCY 1 cut(s) 3302
PscI ACATGT 1 cut(s) 1894
PshBI ATTAAT 1 cut(s) 3042
Psp5II RGGWCCY 1 cut(s) 3302
Psp6I CCWGG 7 cut(s) 1668, 2028, 2241, 3133, 3304, 3964, 4601
PspCI CACGTG 2 cut(s) 1487, 3569
PspEI GGTNACC 2 cut(s) 2533, 3785
PspFI CCCAGC 2 cut(s) 1823, 3152
PspGI CCWGG 7 cut(s) 1668, 2028, 2241, 3133, 3304, 3964, 4601
PspPPI RGGWCCY 1 cut(s) 3302
PspXI VCTCGAGB 1 cut(s) 1605
PsrI GAACNNNNNNTAC 2 cut(s) 1302, 1334
PstNI CAGNNNCTG 1 cut(s) 3134
PsuI RGATCY 4 cut(s) 1551, 2119, 3130, 3990
PsyI GACNNNGTC 1 cut(s) 3834
PvuII CAGCTG 2 cut(s) 464, 3700
RsaI GTAC 3 cut(s) 1746, 1944, 3366
RsaNI GTAC 3 cut(s) 1745, 1943, 3365
SacII CCGCGG 1 cut(s) 1926
SapI GCTCTTC 1 cut(s) 1139
ScrFI CCNGG 8 cut(s) 1670, 2030, 2243, 2721, 3135, 3306, 3966, 4603
SduI GDGCHC 2 cut(s) 646, 1387
SfcI CTRYAG 4 cut(s) 974, 2730, 2990, 3982
SfiI GGCCNNNNNGGCC 1 cut(s) 1194
Sfr274I CTCGAG 1 cut(s) 1605
Sfr303I CCGCGG 1 cut(s) 1926
SgrBI CCGCGG 1 cut(s) 1926
SinI GGWCC 5 cut(s) 1129, 3302, 3340, 3610, 3887
SlaI CTCGAG 1 cut(s) 1605
SmlI CTYRAG 4 cut(s) 1605, 2134, 3275, 3826
SmoI CTYRAG 4 cut(s) 1605, 2134, 3275, 3826
SphI GCATGC 2 cut(s) 666, 3236
SseBI AGGCCT 2 cut(s) 1021, 3945
SspI AATATT 1 cut(s) 2428
SspMI CTAG 9 cut(s) 255, 843, 1083, 1227, 3009, 3690, 3806, 4559, 4644
StuI AGGCCT 2 cut(s) 1021, 3945
StyD4I CCNGG 8 cut(s) 1668, 2028, 2241, 2719, 3133, 3304, 3964, 4601
StyI CCWWGG 3 cut(s) 1016, 3881, 4301
TaaI ACNGT 7 cut(s) 127, 512, 1237, 2474, 2801, 3791, 4139
TaiI ACGT 5 cut(s) 471, 1489, 1621, 2554, 3571
TaqII GACCGA 2 cut(s) 753, 3014
TatI WGTACW 2 cut(s) 1744, 1942
TauI GCSGC 4 cut(s) 547, 2182, 2782, 3222
TseFI GTSAC 5 cut(s) 119, 863, 994, 1243, 2129
TseI GCWGC 7 cut(s) 461, 1691, 2487, 2684, 3515, 4103, 4369
Tsp45I GTSAC 5 cut(s) 119, 863, 994, 1243, 2129
Tth111I GACNNNGTC 1 cut(s) 3834
Van91I CCANNNNNTGG 4 cut(s) 1506, 2337, 2624, 4329
Vha464I CTTAAG 1 cut(s) 3275
VneI GTGCAC 1 cut(s) 642
VpaK11BI GGWCC 5 cut(s) 1129, 3302, 3340, 3610, 3887
VspI ATTAAT 1 cut(s) 3042
XagI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3804, 3969
XbaI TCTAGA 1 cut(s) 3008
XceI RCATGY 4 cut(s) 577, 666, 1898, 3236
XhoI CTCGAG 1 cut(s) 1605
XmiI GTMKAC 2 cut(s) 162, 3686
XmnI GAANNNNTTC 4 cut(s) 490, 2792, 3328, 3751
XspI CTAG 9 cut(s) 255, 843, 1083, 1227, 3009, 3690, 3806, 4559, 4644
ZraI GACGTC 1 cut(s) 469
Zsp2I ATGCAT 4 cut(s) 271, 1771, 3321, 3338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.