Rorug07G0345500

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003305
Physical Location & Seq
Forward (+)
38391473 .. 38392687
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0345500.1

Sequence Viewer

Length: 1215 bp
ATGGATGCTCATTCATATAGTTTGAATCCCATTAATAGTACTCTGAGGCCAATACACTATTTGACTCAACCCCACTTTGATATAGTACCCAAAGTTGCTTCCAGTGGATTTCTTGGTATATACGAGCGATTTTCATTGCATAAGTTTTACTCATCACCATCTCGATCTTTTAGAAGGAGAGAAAATAAAAGATTAGAATCCAGTAGAAAACCAACCCTTAATGAAGCCCAATTTCAAAGGTCTGTATCCCAGTTGTTGCCTAGATTTACACCTGAAGAACTGTGCGATGTTATAACCAAGCAAGATGATCCTCTTGTGTGTTTAGAGTTGTTCAATTGGGCATCGCAACAGTCGCGGTTCAAACATGATGTTAACAGCTATCACATTACAATAAAGAAACTTGGTGTAGCTAAGATGTACGAAGAGATGGATGACATTGTCAACCAAGTGCTTGCTATCTCTCACATGGGTTCTGAGGCGCTTTTCAATTCCATTATCTACTTTTTCACAGAAGCTCGGAAGTTGACTAGAGCTGTCAATATATTTAAACACATGAAGAATAGTAGAAACATGGACTGTAGGCCTTCTGTTAGGACATACAATATTCTGTTTACTGCCTTTTTGAGTAGGGGATGTAATACCTACATAAATCACATGTATATGGAAACCATAAGATGTCTGTTTAGGCAAATGGTGAATGATGGGATTGAACCCGATATTTATACTTTGAATTCAATGATTAAGGGGTATGTTCTTTCCCTTCATGTGAATGATGCACTTAGAGTATTCCATCAGATGGGTGTGGTCTATAACTGCCTGCCAAACACATTTTCCTATGATTATCTCATCCATGGATTATGTGCTCAAGGCCGAACAACCAATGCTAAGCAGTTGTGCAACGAAATGAAGACTAAAGGGTTTATCCCGAGTAGTAAATCCTACAACTCGCTTGTGAATGCTTTGGCTCTTTGTGGAGAGATTGAGGAGGCAGTGAAGTATTTGTGGGAGATGATTGAGAAGCGAAGGTCAACTGAATTCATTACTTATAAGACAGTACTTGATGAAATGTGCAGACAAGGACGGGTTGGACAAGCAATGAAGTTGCTAAAAGAATTTCAAAAGAAAGACATTCTGAGTGGGCATGCTTACAGGAAGCTCCGATATGTGCTTGAAGATGACTATGGAGATTCTGTCTCCCATACTCGATTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

404

Amino Acids

47.1

Weight (kDa)

9.17

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 161 - 207 2.2e-06 PPR repeat family
PPR_2 PF13041 215 - 250 4.1e-06 PPR repeat family
PPR_3 PF13812 227 - 284 3.4e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 244 - 287 1.2e-07 PPR repeat family
PPR_1 PF12854 271 - 303 9.2e-08 PPR repeat
PPR_2 PF13041 274 - 322 4.8e-12 PPR repeat family
TPR_24 PF23276 276 - 372 6.5e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 293, 1047
AccB7I CCANNNNNTGG 1 cut(s) 796
AccII CGCG 1 cut(s) 355
AciI CCGC 1 cut(s) 355
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 3 cut(s) 730, 1034, 1112
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 4 cut(s) 40, 87, 419, 1056
AfiI CCNNNNNNNGG 1 cut(s) 796
AflIII ACRYGT 1 cut(s) 654
AjuI GAANNNNNNNTTGG 2 cut(s) 814, 846
AluBI AGCT 5 cut(s) 378, 410, 515, 533, 1156
AluI AGCT 5 cut(s) 378, 410, 515, 533, 1156
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 1 cut(s) 1198
AlwI GGATC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 925
AoxI GGCC 3 cut(s) 47, 581, 868
ApoI RAATTY 3 cut(s) 730, 1034, 1112
AseI ATTAAT 1 cut(s) 33
AspLEI GCGC 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 147, 706
AvaI CYCGRG 1 cut(s) 925
BbsI GAAGAC 1 cut(s) 914
Bbv12I GWGCWC 1 cut(s) 865
BccI CCATC 5 cut(s) 166, 421, 695, 790, 798
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 1198
BfaI CTAG 2 cut(s) 261, 528
BfmI CTRYAG 1 cut(s) 577
BfoI RGCGCY 1 cut(s) 482
BfuI GTATCC 1 cut(s) 256
BlpI GCTNAGC 1 cut(s) 885
BmcAI AGTACT 2 cut(s) 40, 1056
BmeT110I CYCGRG 1 cut(s) 925
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 2 cut(s) 350, 763
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 914
Bpu1102I GCTNAGC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 849
BsaBI GATNNNNATC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 850
BsaXI ACNNNNNCTCC 2 cut(s) 1176, 1206
Bsc4I CCNNNNNNNGG 1 cut(s) 796
Bse1I ACTGG 3 cut(s) 102, 201, 250
Bse3DI GCAATG 2 cut(s) 134, 1101
Bse8I GATNNNNATC 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 850
BseGI GGATG 4 cut(s) 10, 436, 638, 846
BseJI GATNNNNATC 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 796
BseMI GCAATG 2 cut(s) 134, 1101
BseMII CTCAG 3 cut(s) 35, 465, 1124
BseNI ACTGG 3 cut(s) 102, 201, 250
BseRI GAGGAG 1 cut(s) 998
BsgI GTGCAG 1 cut(s) 1090
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 3 cut(s) 49, 583, 870
BsiHKAI GWGCWC 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 925
BslI CCNNNNNNNGG 1 cut(s) 796
BsmAI GTCTC 1 cut(s) 1198
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 3 cut(s) 49, 583, 870
BsoBI CYCGRG 1 cut(s) 925
Bsp1286I GDGCHC 1 cut(s) 865
Bsp143I GATC 2 cut(s) 164, 307
Bsp1720I GCTNAGC 1 cut(s) 885
Bsp19I CCATGG 1 cut(s) 850
BspACI CCGC 1 cut(s) 355
BspANI GGCC 3 cut(s) 49, 583, 870
BspCNI CTCAG 3 cut(s) 36, 466, 1125
BspFNI CGCG 1 cut(s) 355
BspPI GGATC 1 cut(s) 302
BsrDI GCAATG 2 cut(s) 134, 1101
BsrI ACTGG 3 cut(s) 102, 201, 250
BssECI CCNNGG 1 cut(s) 850
BssMI GATC 2 cut(s) 164, 307
BssT1I CCWWGG 1 cut(s) 850
Bst4CI ACNGT 4 cut(s) 282, 351, 578, 1054
Bst6I CTCTTC 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 453, 818, 1143
BstDEI CTNAG 6 cut(s) 44, 411, 474, 779, 885, 1133
BstDSI CCRYGG 1 cut(s) 850
BstF5I GGATG 4 cut(s) 10, 436, 638, 846
BstFNI CGCG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 2 cut(s) 167, 310
BstMAI GTCTC 1 cut(s) 1198
BstMBI GATC 2 cut(s) 164, 307
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstNSI RCATGY 2 cut(s) 658, 1145
BstSFI CTRYAG 1 cut(s) 577
BstUI CGCG 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 914
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 3 cut(s) 49, 583, 870
BtgI CCRYGG 1 cut(s) 850
BtgZI GCGATG 2 cut(s) 300, 327
BtsCI GGATG 4 cut(s) 10, 436, 638, 846
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 2 cut(s) 109, 996
Cac8I GCNNGC 3 cut(s) 453, 818, 1143
CfoI GCGC 1 cut(s) 481
Csp6I GTAC 4 cut(s) 39, 86, 418, 1055
CviAII CATG 8 cut(s) 365, 466, 553, 571, 655, 764, 851, 1142
CviQI GTAC 4 cut(s) 39, 86, 418, 1055
DdeI CTNAG 6 cut(s) 44, 411, 474, 779, 885, 1133
DpnI GATC 2 cut(s) 166, 309
DpnII GATC 2 cut(s) 164, 307
DraI TTTAAA 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 850
Eco147I AGGCCT 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 925
EcoRI GAATTC 2 cut(s) 730, 1034
EcoT14I CCWWGG 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 850
FaeI CATG 8 cut(s) 368, 469, 556, 574, 658, 767, 854, 1145
FatI CATG 8 cut(s) 364, 465, 552, 570, 654, 763, 850, 1141
FokI GGATG 4 cut(s) 17, 443, 645, 833
FspBI CTAG 2 cut(s) 261, 528
GlaI GCGC 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 3 cut(s) 49, 583, 870
HhaI GCGC 1 cut(s) 481
Hin1II CATG 8 cut(s) 368, 469, 556, 574, 658, 767, 854, 1145
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 4 cut(s) 373, 442, 525, 1029
HindII GTYRAC 4 cut(s) 373, 442, 525, 1029
HinfI GANTC 4 cut(s) 25, 64, 197, 1187
HpaI GTTAAC 1 cut(s) 373
HphI GGTGA 2 cut(s) 147, 706
Hpy166II GTNNAC 5 cut(s) 373, 442, 525, 612, 1029
Hpy188I TCNGA 6 cut(s) 45, 475, 519, 795, 1134, 1160
Hpy188III TCNNGA 2 cut(s) 162, 925
Hpy8I GTNNAC 5 cut(s) 373, 442, 525, 612, 1029
HpyAV CCTTC 4 cut(s) 168, 594, 770, 1017
HpyCH4III ACNGT 4 cut(s) 282, 351, 578, 1054
HpyCH4V TGCA 4 cut(s) 139, 776, 897, 1071
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 6 cut(s) 44, 411, 474, 779, 885, 1133
Hsp92II CATG 8 cut(s) 368, 469, 556, 574, 658, 767, 854, 1145
HspAI GCGC 1 cut(s) 479
KspAI GTTAAC 1 cut(s) 373
Kzo9I GATC 2 cut(s) 164, 307
LmnI GCTCC 1 cut(s) 1161
LpnPI CCDG 6 cut(s) 115, 214, 263, 285, 830, 1135
LweI GCATC 2 cut(s) 350, 763
MaeI CTAG 2 cut(s) 261, 528
MalI GATC 2 cut(s) 166, 309
MboI GATC 2 cut(s) 164, 307
MboII GAAGA 5 cut(s) 287, 434, 568, 919, 1184
MfeI CAATTG 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 6 cut(s) 230, 334, 487, 730, 1034, 1112
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 1066
MnlI CCTC 6 cut(s) 39, 321, 469, 976, 979, 1203
MseI TTAA 5 cut(s) 33, 219, 372, 546, 741
MslI CAYNNNNRTG 2 cut(s) 659, 768
MunI CAATTG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 961
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 1 cut(s) 352
NcoI CCATGG 1 cut(s) 850
NdeII GATC 2 cut(s) 164, 307
NlaIII CATG 8 cut(s) 368, 469, 556, 574, 658, 767, 854, 1145
NspI RCATGY 2 cut(s) 658, 1145
PaeI GCATGC 1 cut(s) 1145
PceI AGGCCT 1 cut(s) 583
PciI ACATGT 1 cut(s) 654
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 3 cut(s) 25, 197, 1187
PflFI GACNNNGTC 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 796
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PscI ACATGT 1 cut(s) 654
PshBI ATTAAT 1 cut(s) 33
PsiI TTATAA 2 cut(s) 293, 1047
PsyI GACNNNGTC 1 cut(s) 437
RsaI GTAC 4 cut(s) 40, 87, 419, 1056
RsaNI GTAC 4 cut(s) 39, 86, 418, 1055
RseI CAYNNNNRTG 2 cut(s) 659, 768
SaqAI TTAA 5 cut(s) 33, 219, 372, 546, 741
Sau3AI GATC 2 cut(s) 164, 307
ScaI AGTACT 2 cut(s) 40, 1056
SchI GAGTC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 2 cut(s) 350, 763
SfcI CTRYAG 1 cut(s) 577
SmiMI CAYNNNNRTG 2 cut(s) 659, 768
SmlI CTYRAG 1 cut(s) 864
SmoI CTYRAG 1 cut(s) 864
SphI GCATGC 1 cut(s) 1145
Sse9I AATT 6 cut(s) 230, 334, 487, 730, 1034, 1112
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 1 cut(s) 355
SspI AATATT 1 cut(s) 604
SspMI CTAG 2 cut(s) 261, 528
StuI AGGCCT 1 cut(s) 583
StyI CCWWGG 1 cut(s) 850
TaaI ACNGT 4 cut(s) 282, 351, 578, 1054
TaqI TCGA 2 cut(s) 163, 1204
TasI AATT 6 cut(s) 230, 334, 487, 730, 1034, 1112
TatI WGTACW 2 cut(s) 38, 1054
TfiI GAWTC 3 cut(s) 25, 197, 1187
Tru1I TTAA 5 cut(s) 33, 219, 372, 546, 741
Tru9I TTAA 5 cut(s) 33, 219, 372, 546, 741
TscAI CASTG 2 cut(s) 109, 996
TspDTI ATGAA 8 cut(s) 123, 237, 569, 752, 920, 1027, 1077, 1112
TspRI CASTG 2 cut(s) 109, 996
Tth111I GACNNNGTC 1 cut(s) 437
Van91I CCANNNNNTGG 1 cut(s) 796
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 3 cut(s) 730, 1034, 1112
XceI RCATGY 2 cut(s) 658, 1145
XspI CTAG 2 cut(s) 261, 528
ZrmI AGTACT 2 cut(s) 40, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.