Rorug07G0345400

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003305
Physical Location & Seq
Forward (+)
38340966 .. 38345873
4908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0345400.1

Sequence Viewer

Length: 3363 bp
ATGGAGAAAGTTGCTTGGTTCTTCCTGGTATACTTATTCTATTGTACAGCGGCCACGTGCTTAACTATGGTAGCACAAACAAACCTTAACATCACCACAGACCAGTCTGCTCTTCTTTCTCTCAAAGCCCGTATCACCAGTGACCCTCAAAACATGATCTTCACCAACTGGTCAAGCACCACCCCTATTTGCAACTGGGTTGGCATCACTTGTGGTGCACGCCATCATCGAGTCACAAAGTTGAACCTCTCTTATTTTGGTCTCGTAGGCACCATTCCTCCTGAGCTAGGCAACTTATCATTGCTTGTTGATCTGAACATCCAAAATGACAGTTTCCAGGGTACCTTGCCTCAGGATATGGCTCGTCTGCGCCGGTTGAAGTTTATTAACTTGGGATACAACAAGTTTATGGGAGTGATTCCATCATGGTTTGGGTCCTTGTCCAAACTTCAAGGATTCAGGTTGTTTGGTAATCAATTTGTAGGATCCGTACCAGCTACCATCTTCAACTTATCTGCTCTGCAAATAATTGATCTGCATCATAACCAACTCTCAGGTAGAATCCCCAGAGAAATCGGGAACCTAACAACGTTGAAGGCGATCTACCTTGGACATAATAATTTTAAAGAAATTCCAAATGAGATTGGCACCTTGAATCAACTAGAAAAGTTGTTTGTGCAAGAAAATTCCTTAAAAGGGCCTATTCCTATGACTGTCTTGAACATGTCATCTTTGACTACTTTATATTTCTATGGAAACAACATGAATGGTAGAATTCCCGAGAATATATGTCAACATCGTCCAAAAATTCAAGTGTTGAATTTGGGTAGGAATCAATTTGATGGTCCACTTCCATCCAAGTTATGGCCATGCAAACAACTTGTTGTATTAATCTTGGAGGATAACAAGTTCAGTGGAAGGATACCCAAATATATTGGGAACTTAACCCAGATAAAGGGGATTTGGCTTGAGACCAACAGCTTGACAGGTCCTATACCATATGAGATTGGTTATCTTCGAAATTTAGAGAAACTGCAACTCGCTGAGAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATATCCACAATAATGGCAATAGATCTGGGAGTTAATAAGCTTTCAGGTAGCCTCCCAGCAAACATAGGCCTTGGGCTTCCAAACCTAAAAGGATTTGTTGCAGGACCGAATCACCTCAATGGAGTAATCCCCAAATCTATCTCCAATGCTTCTGAGCTTGGGATTCTAGACTTGGGAGATAACTTTTTTTCTGGATTTATTCCAAGCAATCTATGCCTCTTGACAAACCTTGAATGGGTCAGCTGCTACAACAACAATTTGACAATTGATACCTCTACTCCAGAAGTTAATATTTTGTCTTGTCTGACAAATCTTAGAAATTTGAGGTATTTAGACTTCTCAAGCAATCCATTAAATACCAAGCTTTCGATTTCCTTCAGTAATTTCTCTGCATCACTTCAATATCTTTATTTAGCCGACTGCATTTTGAGAGGTACCATCCCCAGTGACATAGGCAACATGAGTAGCTTAATATTTTTAGGCTTGGAAGTAAATCAATTGAGCGGGCCAATTCCAGGCTCAATGGGAAGACTACAAAATCTTCAAATTTTGTACATGGGTAAAAACACAGCGCAAGGAAACATTCCAGATGAACTTTGTCAACTAGAAAACTTAAGTGATTTGGATTTGCCTAGGAATCAACTCTCTGGTTCTATACCTTCCTGCTTGGGTAATCTAACAGCCTCTCTTAGATATCTATCCTTAGGTTCCAATTTGTTGAATTCCACCATACCATCTACCTTGTGGGAACTTACAGATATCTTGGAAATAAACTTGTCATCCAATTTTCTAATTGGACCTCTATCAGGTGGTGTTAGTAATCTGAAAGTTGCTATATACTTGGATGTATCATACAACCAATTATCTGGTAGTATACCAAGTAGTGTTGGGAGTTTATCGAATTTGGTCAATCTCTCCTTAGCACATAATAATCTAGAAGGCCCTATTCCAAGTTCCTTTGCAACCTGTATAAGCTTAGAACGATTGGATTTATCTCAGAACAGTCTTTCTGGAGTGATTCCAGTGTCTCTAGAAGCACTCTCATATCTCAAATATCTGAATCTGTCTTTCAACGTACTCCAAGGAGAAATTCCAACCGGTGGTCCTTTCAAAAACTTCTCTGCTGAATCATTTATTTCAAACCAAGGACTCTGTGGTGCATCCCAATTTCAAGTTCCACCATGCAAAAGAAAAACTAGTATGTCTATCTTGAAATATGTTATTCCAGGGATCTTGTCAGCAATGCTTCTAGCAACCTCCATATTTTGGATGTTGATGCTCCGCAGAAAAAAGAAGGCGAAAGCTGCAGCATATACTATCTTGACACCTCAAGTTTTATGGAGACGTGTTTCGTACCAAGAGCTCCTACATGCGACAGATGAATTCAATGAAAGCAACTTACTTGGTACTGGGGGTTTTGGCTCAGTATATAAAGGAACATTATCAGATGGGATAGACGTTGCGATAAAGGTTTTCCATTTGGAGTTAGAAGAGGCATTTACGAGTTTTGAGGTTGAATGTGAAGTGCTATGTAATGTTCGTCACCGAAATCTTGTCAAAGTCATCAGTTGCTGCAGTCAAATTGATTTCAAAGGTCTTGTATTGAATTACATGTCTAATGGGAGCCTTGAGAAGTGGTTGTACTCTCAGAATTCTTCTTTGAACATAATGCAAAGGTTGGATATAATGATAGATGTTGCATCGGCATTGGAGTACCTTCATCATGGTTATGAAGTACCTATCGTCCATTGTGATTTGAAGCCAAGCAACATCCTACTAGATGATGATATGGTTGCACATGTTGCTGATTTCGGTATTGCAAGACTCTTAGGTGGCGGAGATTCTATGACTCAAACCATGACCCTAGCCACAATTGGGTATATTGCTCCAGAGTATGGAATGCAAGGAATAGTGACCACAAGAGGAGATGTGTATAGTTTTGGTATTGTAGTGATGGAAACATTCACAAGAAGGAAGCCAACCGATGAGATATTTGTTGGGGAAATGAGACTAAAGGTTGCAAACTTCCTAGTTGCAGATGCGATAGTTGAAGTTGTGGATGCTAGTTTATTTGGAAGCGAGGAGGATCATGACTTCGTGAGCAAGAGGGAGTGCTTAGCATTCATTATGAGATTAGCTGTTGCTTGTTCAGCAGAATCACCGGAAGAGAGGATAAACATGCAGGAGGTTGTAGCCACGCTTAAAACAATTAAGAACAAGTTTTCAAAGGACGCTGCTGCAGGAGGTGTGGTTTTGAACCGTCGTCCTGTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1120

Amino Acids

123.27

Weight (kDa)

6.32

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 6.8e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 124 - 184 3.3e-06 Leucine rich repeat
LRR_14 PF23598 168 - 250 9.3e-09 Leucine-rich repeat region
LRR_14 PF23598 287 - 528 8.8e-10 Leucine-rich repeat region
LRR_14 PF23598 485 - 615 3.5e-08 Leucine-rich repeat region
LRR_8 PF13855 662 - 722 3.8e-09 Leucine rich repeat
Pkinase PF00069 825 - 1094 9.4e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 828 - 1096 1.1e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 341, 1520
AccB1I GGYRCC 4 cut(s) 269, 341, 647, 1520
AccB7I CCANNNNNTGG 4 cut(s) 864, 2186, 2352, 2981
AccBSI CCGCTC 1 cut(s) 1590
AccI GTMKAC 2 cut(s) 30, 1960
AciI CCGC 4 cut(s) 50, 1590, 2368, 2922
AclI AACGTT 1 cut(s) 590
AclWI GGATC 4 cut(s) 480, 493, 2324, 3180
AcoI YGGCCR 3 cut(s) 51, 866, 1060
AcuI CTGAAG 1 cut(s) 1447
AcvI CACGTG 1 cut(s) 57
AflII CTTAAG 1 cut(s) 1699
AflIII ACRYGT 4 cut(s) 723, 2431, 2697, 2884
AgeI ACCGGT 1 cut(s) 2183
AhlI ACTAGT 1 cut(s) 2282
AjiI CACGTC 1 cut(s) 2432
AjnI CCWGG 4 cut(s) 24, 336, 1600, 2311
AjuI GAANNNNNNNTTGG 4 cut(s) 2160, 2192, 2244, 2276
AloI GAACNNNNNNTCC 2 cut(s) 893, 925
Alw21I GWGCWC 2 cut(s) 220, 2451
Alw26I GTCTC 5 cut(s) 266, 965, 2118, 2422, 3088
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 4 cut(s) 480, 493, 2324, 3180
AlwNI CAGNNNCTG 1 cut(s) 2658
Ama87I CYCGRG 1 cut(s) 779
AoxI GGCC 7 cut(s) 51, 698, 866, 1060, 1153, 1592, 2026
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 6 cut(s) 1329, 2390, 2393, 2658, 3320, 3323
AseI ATTAAT 1 cut(s) 890
AsiGI ACCGGT 1 cut(s) 2183
Asp718I GGTACC 2 cut(s) 341, 1520
AspA2I CCTAGG 1 cut(s) 1718
AspLEI GCGC 2 cut(s) 372, 1660
AspS9I GGNCC 9 cut(s) 435, 698, 845, 989, 1190, 1592, 1883, 2027, 2189
AsuHPI GGTGA 6 cut(s) 85, 127, 154, 1190, 2621, 3237
AsuII TTCGAA 1 cut(s) 1018
AvaI CYCGRG 1 cut(s) 779
AvaII GGWCC 6 cut(s) 435, 845, 989, 1190, 1883, 2189
AvrII CCTAGG 1 cut(s) 1718
AxyI CCTNAGG 2 cut(s) 351, 1789
BaeGI GKGCMC 1 cut(s) 220
BalI TGGCCA 2 cut(s) 868, 1062
BamHI GGATCC 1 cut(s) 485
BanI GGYRCC 4 cut(s) 269, 341, 647, 1520
BanII GRGCYC 1 cut(s) 2451
BarI GAAGNNNNNNTAC 6 cut(s) 587, 619, 1406, 1438, 2711, 2743
BbrPI CACGTG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 1621
Bbv12I GWGCWC 2 cut(s) 220, 2451
BbvI GCAGC 6 cut(s) 1316, 2377, 2405, 2645, 3307, 3310
BciT130I CCWGG 4 cut(s) 26, 338, 1602, 2313
BciVI GTATCC 2 cut(s) 389, 915
BcoDI GTCTC 5 cut(s) 266, 965, 2118, 2422, 3088
BcuI ACTAGT 1 cut(s) 2282
BfmI CTRYAG 3 cut(s) 2391, 2659, 3324
BfrI CTTAAG 1 cut(s) 1699
BfuI GTATCC 2 cut(s) 389, 915
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 7 cut(s) 51, 1330, 2391, 2394, 2659, 3321, 3324
BlnI CCTAGG 1 cut(s) 1718
BlpI GCTNAGC 1 cut(s) 3202
BlsI GCNGC 7 cut(s) 52, 1331, 2392, 2395, 2660, 3322, 3325
Bme1390I CCNGG 4 cut(s) 26, 338, 1602, 2313
Bme18I GGWCC 6 cut(s) 435, 845, 989, 1190, 1883, 2189
BmeT110I CYCGRG 1 cut(s) 779
BmgBI CACGTC 1 cut(s) 2432
BmgT120I GGNCC 9 cut(s) 435, 698, 845, 989, 1190, 1592, 1883, 2027, 2189
BmiI GGNNCC 9 cut(s) 271, 343, 436, 487, 581, 649, 1522, 1795, 2711
BmrFI CCNGG 4 cut(s) 26, 338, 1602, 2313
BmrI ACTGGG 3 cut(s) 205, 1524, 2505
BmsI GCATC 8 cut(s) 213, 547, 1487, 2255, 2352, 2795, 3115, 3136
BmuI ACTGGG 3 cut(s) 205, 1524, 2505
BpiI GAAGAC 1 cut(s) 1621
BpmI CTGGAG 3 cut(s) 1350, 2118, 2958
Bpu10I CCTNAGC 2 cut(s) 282, 2005
Bpu1102I GCTNAGC 1 cut(s) 3202
Bpu14I TTCGAA 1 cut(s) 1018
BpuEI CTTGAG 4 cut(s) 989, 1411, 2400, 2735
BsaAI YACGTR 1 cut(s) 57
BsaBI GATNNNNATC 2 cut(s) 537, 1783
BsaI GGTCTC 2 cut(s) 266, 965
BsaJI CCNNGG 7 cut(s) 337, 607, 1156, 1718, 2167, 2230, 2312
BsaWI WCCGGW 2 cut(s) 2183, 3247
BsaXI ACNNNNNCTCC 6 cut(s) 262, 292, 1348, 1378, 3321, 3351
Bse118I RCCGGY 2 cut(s) 372, 2183
Bse1I ACTGG 7 cut(s) 103, 138, 173, 200, 1530, 2108, 2500
Bse21I CCTNAGG 2 cut(s) 351, 1789
Bse3DI GCAATG 2 cut(s) 299, 2334
Bse8I GATNNNNATC 2 cut(s) 537, 1783
BseBI CCWGG 4 cut(s) 26, 338, 1602, 2313
BseDI CCNNGG 7 cut(s) 337, 607, 1156, 1718, 2167, 2230, 2312
BseJI GATNNNNATC 2 cut(s) 537, 1783
BseMI GCAATG 2 cut(s) 299, 2334
BseMII CTCAG 8 cut(s) 273, 365, 567, 1035, 1230, 2096, 2523, 2747
BseNI ACTGG 7 cut(s) 103, 138, 173, 200, 1530, 2108, 2500
BseRI GAGGAG 2 cut(s) 3024, 3182
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 6 cut(s) 1316, 2377, 2405, 2645, 3307, 3310
BseYI CCCAGC 1 cut(s) 1141
BshFI GGCC 7 cut(s) 53, 700, 868, 1062, 1155, 1594, 2028
BshNI GGYRCC 4 cut(s) 269, 341, 647, 1520
BshTI ACCGGT 1 cut(s) 2183
BsiHKAI GWGCWC 2 cut(s) 220, 2451
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 3 cut(s) 373, 2184, 3248
BsmAI GTCTC 5 cut(s) 266, 965, 2118, 2422, 3088
BsmBI CGTCTC 1 cut(s) 2422
BsmI GAATGC 2 cut(s) 2991, 3206
BsnI GGCC 7 cut(s) 53, 700, 868, 1062, 1155, 1594, 2028
Bso31I GGTCTC 2 cut(s) 266, 965
BsoBI CYCGRG 1 cut(s) 779
Bsp119I TTCGAA 1 cut(s) 1018
Bsp1286I GDGCHC 2 cut(s) 220, 2451
Bsp1407I TGTACA 2 cut(s) 44, 1638
Bsp143I GATC 8 cut(s) 156, 310, 485, 532, 600, 1108, 2316, 3172
Bsp1720I GCTNAGC 1 cut(s) 3202
BspACI CCGC 4 cut(s) 50, 1590, 2368, 2922
BspANI GGCC 7 cut(s) 53, 700, 868, 1062, 1155, 1594, 2028
BspCNI CTCAG 8 cut(s) 274, 364, 566, 1036, 1231, 2095, 2522, 2746
BspHI TCATGA 1 cut(s) 3175
BspLI GGNNCC 9 cut(s) 271, 343, 436, 487, 581, 649, 1522, 1795, 2711
BspMAI CTGCAG 3 cut(s) 2395, 2663, 3328
BspPI GGATC 4 cut(s) 480, 493, 2324, 3180
BspQI GCTCTTC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 1018
BspT107I GGYRCC 4 cut(s) 269, 341, 647, 1520
BspTI CTTAAG 1 cut(s) 1699
BspTNI GGTCTC 2 cut(s) 266, 965
BsrBI CCGCTC 1 cut(s) 1590
BsrDI GCAATG 2 cut(s) 299, 2334
BsrFI RCCGGY 2 cut(s) 372, 2183
BsrGI TGTACA 2 cut(s) 44, 1638
BsrI ACTGG 7 cut(s) 103, 138, 173, 200, 1530, 2108, 2500
BssAI RCCGGY 2 cut(s) 372, 2183
BssECI CCNNGG 7 cut(s) 337, 607, 1156, 1718, 2167, 2230, 2312
BssMI GATC 8 cut(s) 156, 310, 485, 532, 600, 1108, 2316, 3172
BssNAI GTATAC 2 cut(s) 31, 1961
BssT1I CCWWGG 5 cut(s) 607, 1156, 1718, 2167, 2230
Bst1107I GTATAC 2 cut(s) 31, 1961
Bst2UI CCWGG 4 cut(s) 26, 338, 1602, 2313
Bst4CI ACNGT 4 cut(s) 332, 715, 2090, 3347
Bst6I CTCTTC 3 cut(s) 117, 2571, 3246
BstAFI CTTAAG 1 cut(s) 1699
BstAPI GCANNNNNTGC 2 cut(s) 1299, 2888
BstAUI TGTACA 2 cut(s) 44, 1638
BstBAI YACGTR 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 1018
BstC8I GCNNGC 2 cut(s) 220, 1592
BstENI CCTNNNNNAGG 2 cut(s) 285, 1890
BstHHI GCGC 2 cut(s) 372, 1660
BstKTI GATC 8 cut(s) 159, 313, 488, 535, 603, 1111, 2319, 3175
BstMAI GTCTC 5 cut(s) 266, 965, 2118, 2422, 3088
BstMBI GATC 8 cut(s) 156, 310, 485, 532, 600, 1108, 2316, 3172
BstMWI GCNNNNNNNGC 4 cut(s) 1299, 2390, 2888, 3236
BstNI CCWGG 4 cut(s) 26, 338, 1602, 2313
BstNSI RCATGY 5 cut(s) 727, 2459, 2701, 2888, 3268
BstSCI CCNGG 4 cut(s) 24, 336, 1600, 2311
BstSFI CTRYAG 3 cut(s) 2391, 2659, 3324
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 6 cut(s) 1316, 2377, 2405, 2645, 3307, 3310
BstV2I GAAGAC 1 cut(s) 1621
BstX2I RGATCY 3 cut(s) 485, 1108, 2316
BstXI CCANNNNNNTGG 2 cut(s) 1099, 1952
BstYI RGATCY 3 cut(s) 485, 1108, 2316
BstZ17I GTATAC 2 cut(s) 31, 1961
Bsu36I CCTNAGG 2 cut(s) 351, 1789
BsuI GTATCC 2 cut(s) 389, 915
BsuRI GGCC 7 cut(s) 53, 700, 868, 1062, 1155, 1594, 2028
BtrI CACGTC 1 cut(s) 2432
BtsIMutI CAGTG 4 cut(s) 145, 919, 1537, 2115
Cac8I GCNNGC 2 cut(s) 220, 1592
CaiI CAGNNNCTG 1 cut(s) 2658
CciI TCATGA 1 cut(s) 3175
CfoI GCGC 2 cut(s) 372, 1660
Cfr10I RCCGGY 2 cut(s) 372, 2183
Cfr13I GGNCC 9 cut(s) 435, 698, 845, 989, 1190, 1592, 1883, 2027, 2189
CseI GACGC 1 cut(s) 3326
CspAI ACCGGT 1 cut(s) 2183
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
DpnI GATC 8 cut(s) 158, 312, 487, 534, 602, 1110, 2318, 3174
DpnII GATC 8 cut(s) 156, 310, 485, 532, 600, 1108, 2316, 3172
DraI TTTAAA 1 cut(s) 625
EaeI YGGCCR 3 cut(s) 51, 866, 1060
Eam1104I CTCTTC 3 cut(s) 117, 2571, 3246
EarI CTCTTC 3 cut(s) 117, 2571, 3246
EciI GGCGGA 1 cut(s) 2937
Ecl136II GAGCTC 1 cut(s) 2449
Eco130I CCWWGG 5 cut(s) 607, 1156, 1718, 2167, 2230
Eco147I AGGCCT 1 cut(s) 1155
Eco24I GRGCYC 1 cut(s) 2451
Eco31I GGTCTC 2 cut(s) 266, 965
Eco32I GATATC 2 cut(s) 1781, 1846
Eco47I GGWCC 6 cut(s) 435, 845, 989, 1190, 1883, 2189
Eco53kI GAGCTC 1 cut(s) 2449
Eco57I CTGAAG 1 cut(s) 1447
Eco72I CACGTG 1 cut(s) 57
Eco81I CCTNAGG 2 cut(s) 351, 1789
Eco88I CYCGRG 1 cut(s) 779
EcoICRI GAGCTC 1 cut(s) 2449
EcoNI CCTNNNNNAGG 2 cut(s) 285, 1890
EcoO109I RGGNCCY 4 cut(s) 435, 698, 989, 2027
EcoRI GAATTC 4 cut(s) 774, 1807, 2468, 2737
EcoRII CCWGG 4 cut(s) 24, 336, 1600, 2311
EcoRV GATATC 2 cut(s) 1781, 1846
EcoT14I CCWWGG 5 cut(s) 607, 1156, 1718, 2167, 2230
EcoT38I GRGCYC 1 cut(s) 2451
ErhI CCWWGG 5 cut(s) 607, 1156, 1718, 2167, 2230
Esp3I CGTCTC 1 cut(s) 2422
FauI CCCGC 1 cut(s) 1583
FauNDI CATATG 1 cut(s) 1000
FblI GTMKAC 2 cut(s) 30, 1960
Fnu4HI GCNGC 7 cut(s) 51, 1330, 2391, 2394, 2659, 3321, 3324
FriOI GRGCYC 1 cut(s) 2451
Fsp4HI GCNGC 7 cut(s) 51, 1330, 2391, 2394, 2659, 3321, 3324
GlaI GCGC 2 cut(s) 371, 1659
GluI GCNGC 7 cut(s) 51, 1330, 2391, 2394, 2659, 3321, 3324
GsaI CCCAGC 1 cut(s) 1145
GsuI CTGGAG 3 cut(s) 1350, 2118, 2958
HaeIII GGCC 7 cut(s) 53, 700, 868, 1062, 1155, 1594, 2028
HapII CCGG 3 cut(s) 373, 2184, 3248
HgaI GACGC 1 cut(s) 3326
HhaI GCGC 2 cut(s) 372, 1660
Hin6I GCGC 2 cut(s) 370, 1658
HinP1I GCGC 2 cut(s) 370, 1658
HincII GTYRAC 2 cut(s) 794, 1688
HindII GTYRAC 2 cut(s) 794, 1688
HindIII AAGCTT 3 cut(s) 1124, 1448, 2059
HpaII CCGG 3 cut(s) 373, 2184, 3248
HphI GGTGA 6 cut(s) 85, 127, 154, 1190, 2621, 3237
Hpy166II GTNNAC 6 cut(s) 31, 218, 794, 848, 1688, 1961
Hpy188I TCNGA 8 cut(s) 315, 1240, 1392, 1911, 2085, 2145, 2533, 2736
Hpy8I GTNNAC 6 cut(s) 31, 218, 794, 848, 1688, 1961
Hpy99I CGWCG 1 cut(s) 3351
HpyAV CCTTC 8 cut(s) 589, 912, 1471, 1755, 2018, 2374, 2813, 3051
HpyCH4III ACNGT 4 cut(s) 332, 715, 2090, 3347
HpyCH4IV ACGT 5 cut(s) 56, 590, 2160, 2431, 2544
HpyF10VI GCNNNNNNNGC 4 cut(s) 1299, 2390, 2888, 3236
HpySE526I ACGT 5 cut(s) 56, 590, 2160, 2431, 2544
HspAI GCGC 2 cut(s) 370, 1658
KpnI GGTACC 2 cut(s) 345, 1524
Kzo9I GATC 8 cut(s) 156, 310, 485, 532, 600, 1108, 2316, 3172
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 4 cut(s) 2370, 2454, 2709, 2977
Lsp1109I GCAGC 6 cut(s) 1316, 2377, 2405, 2645, 3307, 3310
LweI GCATC 8 cut(s) 213, 547, 1487, 2255, 2352, 2795, 3115, 3136
MaeII ACGT 5 cut(s) 56, 590, 2160, 2431, 2544
MaeIII GTNAC 5 cut(s) 140, 232, 1532, 2627, 2998
MalI GATC 8 cut(s) 158, 312, 487, 534, 602, 1110, 2318, 3174
MbiI CCGCTC 1 cut(s) 1590
MboI GATC 8 cut(s) 156, 310, 485, 532, 600, 1108, 2316, 3172
MfeI CAATTG 3 cut(s) 1350, 1583, 2958
MflI RGATCY 3 cut(s) 485, 1108, 2316
MhlI GDGCHC 2 cut(s) 220, 2451
MlsI TGGCCA 2 cut(s) 868, 1062
MluNI TGGCCA 2 cut(s) 868, 1062
MlyI GAGTC 4 cut(s) 240, 2229, 2904, 2929
MmeI TCCRAC 2 cut(s) 2204, 2745
Mox20I TGGCCA 2 cut(s) 868, 1062
MscI TGGCCA 2 cut(s) 868, 1062
MslI CAYNNNNRTG 3 cut(s) 1097, 1203, 2814
Msp20I TGGCCA 2 cut(s) 868, 1062
MspA1I CMGCKG 2 cut(s) 50, 1329
MspCI CTTAAG 1 cut(s) 1699
MspI CCGG 3 cut(s) 373, 2184, 3248
MspR9I CCNGG 4 cut(s) 26, 338, 1602, 2313
MunI CAATTG 3 cut(s) 1350, 1583, 2958
Mva1269I GAATGC 2 cut(s) 2991, 3206
MvaI CCWGG 4 cut(s) 26, 338, 1602, 2313
MwoI GCNNNNNNNGC 4 cut(s) 1299, 2390, 2888, 3236
NdeI CATATG 1 cut(s) 1000
NdeII GATC 8 cut(s) 156, 310, 485, 532, 600, 1108, 2316, 3172
NlaIV GGNNCC 9 cut(s) 271, 343, 436, 487, 581, 649, 1522, 1795, 2711
NmuCI GTSAC 5 cut(s) 140, 232, 1532, 2627, 2998
NspI RCATGY 5 cut(s) 727, 2459, 2701, 2888, 3268
NspV TTCGAA 1 cut(s) 1018
PagI TCATGA 1 cut(s) 3175
PceI AGGCCT 1 cut(s) 1155
PciI ACATGT 3 cut(s) 723, 2697, 2884
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 2 cut(s) 226, 596
PctI GAATGC 2 cut(s) 2991, 3206
PflMI CCANNNNNTGG 4 cut(s) 864, 2186, 2352, 2981
PinAI ACCGGT 1 cut(s) 2183
PkrI GCNGC 7 cut(s) 52, 1331, 2392, 2395, 2660, 3322, 3325
PleI GAGTC 4 cut(s) 239, 2229, 2904, 2929
PmaCI CACGTG 1 cut(s) 57
PmlI CACGTG 1 cut(s) 57
PpsI GAGTC 4 cut(s) 239, 2229, 2904, 2929
Ppu21I YACGTR 1 cut(s) 57
PpuMI RGGWCCY 2 cut(s) 435, 989
PscI ACATGT 3 cut(s) 723, 2697, 2884
PshBI ATTAAT 1 cut(s) 890
Psp124BI GAGCTC 1 cut(s) 2451
Psp1406I AACGTT 1 cut(s) 590
Psp5II RGGWCCY 2 cut(s) 435, 989
Psp6I CCWGG 4 cut(s) 24, 336, 1600, 2311
PspCI CACGTG 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 4 cut(s) 24, 336, 1600, 2311
PspN4I GGNNCC 9 cut(s) 271, 343, 436, 487, 581, 649, 1522, 1795, 2711
PspPI GGNCC 9 cut(s) 435, 698, 845, 989, 1190, 1592, 1883, 2027, 2189
PspPPI RGGWCCY 2 cut(s) 435, 989
PstI CTGCAG 3 cut(s) 2395, 2663, 3328
PstNI CAGNNNCTG 1 cut(s) 2658
PsuI RGATCY 3 cut(s) 485, 1108, 2316
PvuII CAGCTG 1 cut(s) 1329
RseI CAYNNNNRTG 3 cut(s) 1097, 1203, 2814
SacI GAGCTC 1 cut(s) 2451
SapI GCTCTTC 1 cut(s) 117
SatI GCNGC 7 cut(s) 51, 1330, 2391, 2394, 2659, 3321, 3324
Sau3AI GATC 8 cut(s) 156, 310, 485, 532, 600, 1108, 2316, 3172
Sau96I GGNCC 9 cut(s) 435, 698, 845, 989, 1190, 1592, 1883, 2027, 2189
SchI GAGTC 4 cut(s) 240, 2229, 2904, 2929
ScrFI CCNGG 4 cut(s) 26, 338, 1602, 2313
SduI GDGCHC 2 cut(s) 220, 2451
SfaNI GCATC 8 cut(s) 213, 547, 1487, 2255, 2352, 2795, 3115, 3136
SfcI CTRYAG 3 cut(s) 2391, 2659, 3324
SfuI TTCGAA 1 cut(s) 1018
SinI GGWCC 6 cut(s) 435, 845, 989, 1190, 1883, 2189
SmiMI CAYNNNNRTG 3 cut(s) 1097, 1203, 2814
SmlI CTYRAG 5 cut(s) 968, 1426, 1699, 2415, 2714
SmoI CTYRAG 5 cut(s) 968, 1426, 1699, 2415, 2714
SpeI ACTAGT 1 cut(s) 2282
SseBI AGGCCT 1 cut(s) 1155
SsiI CCGC 4 cut(s) 50, 1590, 2368, 2922
SspI AATATT 2 cut(s) 1378, 1560
SstI GAGCTC 1 cut(s) 2451
StuI AGGCCT 1 cut(s) 1155
StyD4I CCNGG 4 cut(s) 24, 336, 1600, 2311
StyI CCWWGG 5 cut(s) 607, 1156, 1718, 2167, 2230
TaaI ACNGT 4 cut(s) 332, 715, 2090, 3347
TaiI ACGT 5 cut(s) 59, 593, 2163, 2434, 2547
TaqI TCGA 4 cut(s) 229, 1018, 1454, 1985
TaqII GACCGA 1 cut(s) 1207
TatI WGTACW 3 cut(s) 44, 1638, 2727
TauI GCSGC 1 cut(s) 53
TscAI CASTG 4 cut(s) 145, 919, 1537, 2115
TseFI GTSAC 5 cut(s) 140, 232, 1532, 2627, 2998
TseI GCWGC 6 cut(s) 1329, 2390, 2393, 2658, 3320, 3323
Tsp45I GTSAC 5 cut(s) 140, 232, 1532, 2627, 2998
TspDTI ATGAA 7 cut(s) 779, 1692, 2481, 2490, 2795, 2832, 3199
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 4 cut(s) 145, 919, 1537, 2115
Van91I CCANNNNNTGG 4 cut(s) 864, 2186, 2352, 2981
Vha464I CTTAAG 1 cut(s) 1699
VneI GTGCAC 1 cut(s) 216
VpaK11BI GGWCC 6 cut(s) 435, 845, 989, 1190, 1883, 2189
VspI ATTAAT 1 cut(s) 890
XagI CCTNNNNNAGG 2 cut(s) 285, 1890
XbaI TCTAGA 3 cut(s) 1252, 2020, 2116
XceI RCATGY 5 cut(s) 727, 2459, 2701, 2888, 3268
XcmI CCANNNNNNNNNTGG 3 cut(s) 861, 1827, 2237
XmaJI CCTAGG 1 cut(s) 1718
XmiI GTMKAC 2 cut(s) 30, 1960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.