pycom11g27490

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003305
Physical Location & Seq
Forward (+)
29736026 .. 29737322
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g27490.2

Sequence Viewer

Length: 1065 bp
ATGTTACTGATGAAAATTCCAGTGAAGGGGAGAAAGGAAATATTAGCACCAGTTCTTCTAGTGATCCAGACTGCAGCGAAGAAGATGGTGAAGCTGGATGCAGTCATAAGGACAGCCTTCGTCGATCAAGGAGACAAAGACCAAAGGTTGAGTCTTCCGAGAGGCGTGTCAAGAAAAGGAGAGTGGGTGAGCATCGATCGCGTTATATCTGGGAATAACAGAACTAAAATTCCAAAAGGTGGCCGGAAAGTTTCGAAGTGGAAGTCTTCTACAGCAAAGACATTGAGACCCCAGCGACTCGCAGCACGCAATGCTCGAACTGTGTTTTCTCAGAACCCTGAAACATCTACGGAAGGAGAAGAAGATGCCTGGGAAGATGATTCATCGAATAGTGAGTCACTTCAGCAAGAATTCCACACTCAAAGCAGTGATGGGGACTTCCAGATAATGCAGCAAAAATATGCTAAAGAAGAACCACCTCTACATGAATTTGGCGATATAGCCCAGCCTCTTGTAGTTTCTTCGTCTCAGTCAAACGTCAGAAGGATGCCGAAATTGGTTTTTAAGATTAAGAAGCAAGAGGCTCCAAAGGATGTAAAACTCAAAGACAACAATCAGGCTGATTTTGTGTCTCCATCTTCTAGATGTCAAGATGCCACTCCAGATAACCGGATTATTAACAGCTCTGTGGATCCAGATTCCTCTTCGGTCAATGTGCTTGATATGAAGTTTTCAAGAAATCTCTTGGACAATGATTTGACAGATACTGGGCAAACTGTAAAGACTGGGAATTCTCTGGAAGCATCCGCAAGTTACCAGGATAGCAGAGTCAGATTGAATGTAGCCACTGGGTCGCTTGCTAGTTTTAATGCACATATAGAAGAGATGAATAATGTCCATCGGGATGAGGAACATACTGGAACACGTGCATTTGAGGATCTGATCTGGATGGTCTCAGAAGTAGAGGGCTTTCTCATACTGATGAGGACCTTGTATCTTCATCATTTGATTCCTCAGCTTTGGGCAAGCACAAACAAAAGGGAATTGAGGGCTCTCTGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

355

Amino Acids

39.94

Weight (kDa)

8.98

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 239
AccII CGCG 1 cut(s) 201
AciI CCGC 1 cut(s) 807
AclWI GGATC 4 cut(s) 58, 686, 699, 945
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 5 cut(s) 15, 228, 410, 488, 790
AcuI CTGAAG 1 cut(s) 386
AcvI CACGTG 1 cut(s) 926
AfiI CCNNNNNNNGG 2 cut(s) 26, 239
AflIII ACRYGT 1 cut(s) 923
AgsI TTSAA 2 cut(s) 735, 838
AjnI CCWGG 2 cut(s) 368, 816
AloI GAACNNNNNNTCC 2 cut(s) 214, 246
AluBI AGCT 3 cut(s) 94, 684, 1018
AluI AGCT 3 cut(s) 94, 684, 1018
Alw26I GTCTC 5 cut(s) 126, 280, 531, 636, 958
AlwI GGATC 4 cut(s) 58, 686, 699, 945
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 3 cut(s) 74, 302, 451
ApoI RAATTY 5 cut(s) 15, 228, 410, 488, 790
ArsI GACNNNNNNTTYG 6 cut(s) 136, 168, 248, 280, 380, 412
AspS9I GGNCC 1 cut(s) 987
AsuHPI GGTGA 2 cut(s) 100, 199
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 987
BamHI GGATCC 1 cut(s) 691
BanII GRGCYC 1 cut(s) 1054
BbrPI CACGTG 1 cut(s) 926
BbsI GAAGAC 2 cut(s) 146, 258
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 3 cut(s) 86, 314, 463
BccI CCATC 5 cut(s) 79, 425, 643, 906, 943
BciT130I CCWGG 2 cut(s) 370, 818
BcoDI GTCTC 5 cut(s) 126, 280, 531, 636, 958
BfaI CTAG 3 cut(s) 59, 642, 861
BfmI CTRYAG 2 cut(s) 72, 270
BisI GCNGC 3 cut(s) 75, 303, 452
BlsI GCNGC 3 cut(s) 76, 304, 453
Bme1390I CCNGG 2 cut(s) 370, 818
Bme18I GGWCC 1 cut(s) 987
BmgT120I GGNCC 1 cut(s) 987
BmiI GGNNCC 2 cut(s) 585, 693
BmrFI CCNGG 2 cut(s) 370, 818
BmrI ACTGGG 3 cut(s) 777, 795, 858
BmsI GCATC 6 cut(s) 88, 201, 355, 537, 643, 812
BmuI ACTGGG 3 cut(s) 777, 795, 858
BpiI GAAGAC 2 cut(s) 146, 258
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 1014
Bpu14I TTCGAA 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 926
BsaI GGTCTC 2 cut(s) 280, 958
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 669
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 239
Bse1I ACTGG 6 cut(s) 20, 50, 772, 790, 853, 922
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 2 cut(s) 370, 818
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 6 cut(s) 103, 552, 598, 803, 910, 954
BseLI CCNNNNNNNGG 2 cut(s) 26, 239
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 4 cut(s) 344, 542, 969, 1028
BseNI ACTGG 6 cut(s) 20, 50, 772, 790, 853, 922
BseXI GCAGC 3 cut(s) 86, 314, 463
BseYI CCCAGC 2 cut(s) 291, 504
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 2 cut(s) 244, 670
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 26, 239
BsmAI GTCTC 5 cut(s) 126, 280, 531, 636, 958
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 2 cut(s) 280, 958
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp143I GATC 6 cut(s) 63, 124, 196, 691, 937, 942
BspACI CCGC 1 cut(s) 807
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 4 cut(s) 343, 541, 968, 1027
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 585, 693
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 4 cut(s) 58, 686, 699, 945
BspT104I TTCGAA 1 cut(s) 254
BspTNI GGTCTC 2 cut(s) 280, 958
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 6 cut(s) 20, 50, 772, 790, 853, 922
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 6 cut(s) 63, 124, 196, 691, 937, 942
Bst2UI CCWGG 2 cut(s) 370, 818
Bst4CI ACNGT 2 cut(s) 322, 778
Bst6I CTCTTC 2 cut(s) 709, 876
BstAPI GCANNNNNTGC 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 926
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 307, 858, 1027
BstDEI CTNAG 4 cut(s) 330, 528, 955, 1014
BstF5I GGATG 6 cut(s) 103, 552, 598, 803, 910, 954
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 6 cut(s) 66, 127, 199, 694, 940, 945
BstMAI GTCTC 5 cut(s) 126, 280, 531, 636, 958
BstMBI GATC 6 cut(s) 63, 124, 196, 691, 937, 942
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 198, 311
BstNI CCWGG 2 cut(s) 370, 818
BstSCI CCNGG 2 cut(s) 368, 816
BstSFI CTRYAG 2 cut(s) 72, 270
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 86, 314, 463
BstV2I GAAGAC 2 cut(s) 146, 258
BstX2I RGATCY 2 cut(s) 691, 937
BstYI RGATCY 2 cut(s) 691, 937
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 1 cut(s) 243
BsuTUI ATCGAT 1 cut(s) 195
BtsCI GGATG 6 cut(s) 103, 552, 598, 803, 910, 954
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 3 cut(s) 27, 433, 846
Cac8I GCNNGC 3 cut(s) 307, 858, 1027
CaiI CAGNNNCTG 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 987
ClaI ATCGAT 1 cut(s) 195
CviAII CATG 1 cut(s) 485
DdeI CTNAG 4 cut(s) 330, 528, 955, 1014
DpnI GATC 6 cut(s) 65, 126, 198, 693, 939, 944
DpnII GATC 6 cut(s) 63, 124, 196, 691, 937, 942
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 709, 876
EarI CTCTTC 2 cut(s) 709, 876
Eco24I GRGCYC 1 cut(s) 1054
Eco31I GGTCTC 2 cut(s) 280, 958
Eco47I GGWCC 1 cut(s) 987
Eco57I CTGAAG 1 cut(s) 386
Eco72I CACGTG 1 cut(s) 926
EcoO109I RGGNCCY 1 cut(s) 987
EcoRI GAATTC 2 cut(s) 410, 790
EcoRII CCWGG 2 cut(s) 368, 816
EcoT38I GRGCYC 1 cut(s) 1054
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 1 cut(s) 488
FaqI GGGAC 1 cut(s) 449
FatI CATG 1 cut(s) 484
Fnu4HI GCNGC 3 cut(s) 75, 303, 452
FokI GGATG 6 cut(s) 110, 559, 605, 790, 917, 961
FriOI GRGCYC 1 cut(s) 1054
Fsp4HI GCNGC 3 cut(s) 75, 303, 452
FspBI CTAG 3 cut(s) 59, 642, 861
GluI GCNGC 3 cut(s) 75, 303, 452
GsaI CCCAGC 2 cut(s) 295, 508
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 1 cut(s) 243
HapII CCGG 2 cut(s) 244, 670
Hin1II CATG 1 cut(s) 488
HinfI GANTC 7 cut(s) 151, 297, 380, 395, 698, 828, 1009
HpaII CCGG 2 cut(s) 244, 670
HphI GGTGA 2 cut(s) 100, 199
Hpy188I TCNGA 6 cut(s) 159, 333, 542, 833, 942, 958
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 19, 127, 347, 537
HpyCH4III ACNGT 2 cut(s) 322, 778
HpyCH4IV ACGT 2 cut(s) 537, 925
HpyCH4V TGCA 5 cut(s) 74, 101, 451, 872, 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 311
HpyF3I CTNAG 4 cut(s) 330, 528, 955, 1014
HpySE526I ACGT 2 cut(s) 537, 925
Hsp92II CATG 1 cut(s) 488
Kzo9I GATC 6 cut(s) 63, 124, 196, 691, 937, 942
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 3 cut(s) 86, 314, 463
LweI GCATC 6 cut(s) 88, 201, 355, 537, 643, 812
MaeI CTAG 3 cut(s) 59, 642, 861
MaeII ACGT 2 cut(s) 537, 925
MaeIII GTNAC 3 cut(s) 3, 396, 812
MalI GATC 6 cut(s) 65, 126, 198, 693, 939, 944
MboI GATC 6 cut(s) 63, 124, 196, 691, 937, 942
MflI RGATCY 2 cut(s) 691, 937
MhlI GDGCHC 1 cut(s) 1054
MluCI AATT 7 cut(s) 15, 228, 410, 488, 554, 790, 1043
MlyI GAGTC 4 cut(s) 160, 291, 404, 837
MseI TTAA 4 cut(s) 564, 570, 678, 867
MslI CAYNNNNRTG 2 cut(s) 903, 980
MspI CCGG 2 cut(s) 244, 670
MspR9I CCNGG 2 cut(s) 370, 818
MvaI CCWGG 2 cut(s) 370, 818
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 198, 311
NdeII GATC 6 cut(s) 63, 124, 196, 691, 937, 942
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 2 cut(s) 585, 693
NmuCI GTSAC 1 cut(s) 396
NspV TTCGAA 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PfeI GAWTC 3 cut(s) 380, 698, 1009
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 3 cut(s) 76, 304, 453
Ple19I CGATCG 1 cut(s) 199
PleI GAGTC 4 cut(s) 159, 291, 403, 836
PmaCI CACGTG 1 cut(s) 926
PmlI CACGTG 1 cut(s) 926
PpsI GAGTC 4 cut(s) 159, 291, 403, 836
Ppu21I YACGTR 1 cut(s) 926
PpuMI RGGWCCY 1 cut(s) 987
Psp5II RGGWCCY 1 cut(s) 987
Psp6I CCWGG 2 cut(s) 368, 816
PspCI CACGTG 1 cut(s) 926
PspFI CCCAGC 2 cut(s) 291, 504
PspGI CCWGG 2 cut(s) 368, 816
PspN4I GGNNCC 2 cut(s) 585, 693
PspPI GGNCC 1 cut(s) 987
PspPPI RGGWCCY 1 cut(s) 987
PsrI GAACNNNNNNTAC 2 cut(s) 465, 497
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 2 cut(s) 691, 937
PvuI CGATCG 1 cut(s) 199
RseI CAYNNNNRTG 2 cut(s) 903, 980
SaqAI TTAA 4 cut(s) 564, 570, 678, 867
SatI GCNGC 3 cut(s) 75, 303, 452
Sau3AI GATC 6 cut(s) 63, 124, 196, 691, 937, 942
Sau96I GGNCC 1 cut(s) 987
SchI GAGTC 4 cut(s) 160, 291, 404, 837
ScrFI CCNGG 2 cut(s) 370, 818
SduI GDGCHC 1 cut(s) 1054
SetI ASST 9 cut(s) 96, 149, 241, 481, 540, 686, 928, 992, 1020
SfaNI GCATC 6 cut(s) 88, 201, 355, 537, 643, 812
SfcI CTRYAG 2 cut(s) 72, 270
SfuI TTCGAA 1 cut(s) 254
SinI GGWCC 1 cut(s) 987
SmiMI CAYNNNNRTG 2 cut(s) 903, 980
Sse9I AATT 7 cut(s) 15, 228, 410, 488, 554, 790, 1043
SsiI CCGC 1 cut(s) 807
SspI AATATT 1 cut(s) 42
SspMI CTAG 3 cut(s) 59, 642, 861
StyD4I CCNGG 2 cut(s) 368, 816
TaaI ACNGT 2 cut(s) 322, 778
TaiI ACGT 2 cut(s) 540, 928
TaqI TCGA 5 cut(s) 123, 195, 254, 316, 386
TaqII GACCGA 1 cut(s) 697
TasI AATT 7 cut(s) 15, 228, 410, 488, 554, 790, 1043
TfiI GAWTC 3 cut(s) 380, 698, 1009
Tru1I TTAA 4 cut(s) 564, 570, 678, 867
Tru9I TTAA 4 cut(s) 564, 570, 678, 867
TscAI CASTG 3 cut(s) 27, 433, 853
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 3 cut(s) 74, 302, 451
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 6 cut(s) 26, 372, 501, 740, 902, 989
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 3 cut(s) 27, 433, 853
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 987
XapI RAATTY 5 cut(s) 15, 228, 410, 488, 790
XbaI TCTAGA 1 cut(s) 641
XspI CTAG 3 cut(s) 59, 642, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.