pycom11g27500

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003305
Physical Location & Seq
Forward (+)
29737689 .. 29739242
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g27500.3

Sequence Viewer

Length: 1098 bp
ATGAGCCATAGCCCTAAGTTGAGGTGGGGCCATCAAACAGTGGGGACATCAAAAGATGCAGAAGACTCCTCTGCCAAATTGCGCGACCAGATTCACCAAAGATCAAGGTCTACGAGAAGTCGTCAGGGTTCGTGTACCGATTATGGCCAAAGTTCTTCAACACGAAGCATGTCAGTTAACCCCGCTGGAAAGTTACCATGGCTGATGTTGTCGAAACATGAGGATGGTTACCGTTACATTCCTCAGCTCGGTGATGAAGTTGTATACCTGAGACAGGGCCATCAAGAGTATATAAAACTAGTCAAGAATTCAGAAGAGGGTCCTTGGGAATCAATTAAGGAAAACATCAAAGTTGCGGAAGTTTGCAAGGTTGACAGCCTCGAATATGCTTCGCTGCCTGGTTCTGGGGAGAGTTGCTGTAAAATCAAACTTAAATTTGTAGACCCTTCTTCTGCTATCTTTGGTAAAGCATTGAAGTTGACTTTGCCTGAAATTGATTTTAACGATTTCATTGTTGAGAAAACGTGGTATGATGCTTCTATTGGAAGAAACTGGACCACTAGGGAGGAATGCGCGGTTTGGTGGAGGGATTCAATTTCAGATGGAGGTGGGACTTGGTGGGTAGGTCAAATTATTCGTTGTCAGCCCAAGTCACATGAGTTTCCCGACAGCCCTTGGTTAAGATATGAGGTTCGGTACGAGAATGATGATGAAACCCATTTGCATTGTCCTTGGGAATTGCGAGAACCGTCCATAGTAGATGATCCATCCTCGTGCGAACAGCCCCATATTGATTCTGAAAGCAAAGAGAAGCTGCTGCGTAATTTTTATAAATTACAACAGAAGGACTTCCAAACAATCCAACAATTGAATCAAGCTGTTCAGAAGGCGGATTTCTGCAACAGCTTTCCGGTGCAATTGTACCCCGAATTAATCCAGTCGAGGTTAGAGAACGACTATTATAGAAGCTTGGACGCTGTGAAGCATGATATAACGGTTATGCTGACAAATGCCCAGTATTACTTCAAGAGAAATCAATTGCAAGCGCGGATTAGGCACATCTCAAAGAGGTTTAAGAAGAAACTGTCAAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

366

Amino Acids

42.51

Weight (kDa)

7.98

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AccI GTMKAC 3 cut(s) 110, 264, 441
AccII CGCG 3 cut(s) 84, 575, 1048
AciI CCGC 5 cut(s) 183, 356, 575, 890, 1048
AclWI GGATC 1 cut(s) 758
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 2 cut(s) 307, 434
AfaI GTAC 3 cut(s) 136, 698, 923
AfiI CCNNNNNNNGG 3 cut(s) 248, 274, 404
AgsI TTSAA 5 cut(s) 159, 475, 594, 871, 1027
AhlI ACTAGT 1 cut(s) 298
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 5 cut(s) 247, 814, 878, 906, 969
AluI AGCT 5 cut(s) 247, 814, 878, 906, 969
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 1 cut(s) 758
AoxI GGCC 3 cut(s) 28, 145, 277
ApeKI GCWGC 3 cut(s) 394, 814, 817
ApoI RAATTY 2 cut(s) 307, 434
AseI ATTAAT 1 cut(s) 932
Asp700I GAANNNNTTC 1 cut(s) 848
AspLEI GCGC 3 cut(s) 84, 575, 1048
AspS9I GGNCC 4 cut(s) 28, 277, 320, 555
AsuHPI GGTGA 2 cut(s) 86, 263
AvaII GGWCC 2 cut(s) 320, 555
BalI TGGCCA 1 cut(s) 147
BauI CACGAG 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 381, 801, 804
BccI CCATC 5 cut(s) 39, 218, 288, 596, 775
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 265
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 2 cut(s) 299, 561
BisI GCNGC 3 cut(s) 395, 815, 818
BlsI GCNGC 3 cut(s) 396, 816, 819
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 2 cut(s) 320, 555
BmgT120I GGNCC 4 cut(s) 28, 277, 320, 555
BmiI GGNNCC 2 cut(s) 29, 321
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 1009
BmsI GCATC 2 cut(s) 46, 523
BmuI ACTGGG 1 cut(s) 1009
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 197, 323, 674, 731
BsaWI WCCGGW 1 cut(s) 910
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 274, 404
Bse1I ACTGG 3 cut(s) 557, 937, 1015
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 4 cut(s) 197, 323, 674, 731
BseGI GGATG 2 cut(s) 229, 767
BseLI CCNNNNNNNGG 3 cut(s) 248, 274, 404
BseMII CTCAG 2 cut(s) 257, 260
BseNI ACTGG 3 cut(s) 557, 937, 1015
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 3 cut(s) 381, 801, 804
Bsh1236I CGCG 3 cut(s) 84, 575, 1048
BshFI GGCC 3 cut(s) 30, 147, 279
BsiSI CCGG 1 cut(s) 911
BslFI GGGAC 2 cut(s) 58, 625
BslI CCNNNNNNNGG 3 cut(s) 248, 274, 404
BsmAI GTCTC 1 cut(s) 265
BsmFI GGGAC 2 cut(s) 58, 625
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 3 cut(s) 30, 147, 279
Bsp143I GATC 2 cut(s) 101, 763
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 5 cut(s) 183, 356, 575, 890, 1048
BspANI GGCC 3 cut(s) 30, 147, 279
BspCNI CTCAG 2 cut(s) 256, 261
BspFNI CGCG 3 cut(s) 84, 575, 1048
BspLI GGNNCC 2 cut(s) 29, 321
BspPI GGATC 1 cut(s) 758
BsrI ACTGG 3 cut(s) 557, 937, 1015
BssECI CCNNGG 4 cut(s) 197, 323, 674, 731
BssMI GATC 2 cut(s) 101, 763
BssNAI GTATAC 1 cut(s) 265
BssSI CACGAG 1 cut(s) 772
BssT1I CCWWGG 4 cut(s) 197, 323, 674, 731
Bst1107I GTATAC 1 cut(s) 265
Bst2BI CACGAG 1 cut(s) 772
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 5 cut(s) 40, 233, 750, 997, 1086
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 1044
BstDEI CTNAG 3 cut(s) 15, 243, 269
BstDSI CCRYGG 1 cut(s) 197
BstEII GGTNACC 1 cut(s) 227
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 229, 767
BstFNI CGCG 3 cut(s) 84, 575, 1048
BstHHI GCGC 3 cut(s) 84, 575, 1048
BstKTI GATC 2 cut(s) 104, 766
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 2 cut(s) 101, 763
BstMWI GCNNNNNNNGC 1 cut(s) 1054
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 172
BstPI GGTNACC 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 397
BstUI CGCG 3 cut(s) 84, 575, 1048
BstV1I GCAGC 3 cut(s) 381, 801, 804
BstV2I GAAGAC 1 cut(s) 69
BstZ17I GTATAC 1 cut(s) 265
BsuRI GGCC 3 cut(s) 30, 147, 279
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 2 cut(s) 229, 767
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 1044
CfoI GCGC 3 cut(s) 84, 575, 1048
Cfr13I GGNCC 4 cut(s) 28, 277, 320, 555
CseI GACGC 1 cut(s) 983
Csp6I GTAC 3 cut(s) 135, 697, 922
CviAII CATG 5 cut(s) 169, 198, 218, 656, 986
CviQI GTAC 3 cut(s) 135, 697, 922
DdeI CTNAG 3 cut(s) 15, 243, 269
DpnI GATC 2 cut(s) 103, 765
DpnII GATC 2 cut(s) 101, 763
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 905
Eco130I CCWWGG 4 cut(s) 197, 323, 674, 731
Eco47I GGWCC 2 cut(s) 320, 555
Eco91I GGTNACC 1 cut(s) 227
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 4 cut(s) 197, 323, 674, 731
ErhI CCWWGG 4 cut(s) 197, 323, 674, 731
FaeI CATG 5 cut(s) 172, 201, 221, 659, 989
FaqI GGGAC 2 cut(s) 58, 625
FatI CATG 5 cut(s) 168, 197, 217, 655, 985
FauI CCCGC 1 cut(s) 190
FblI GTMKAC 3 cut(s) 110, 264, 441
Fnu4HI GCNGC 3 cut(s) 395, 815, 818
FokI GGATG 2 cut(s) 236, 754
Fsp4HI GCNGC 3 cut(s) 395, 815, 818
FspBI CTAG 2 cut(s) 299, 561
GlaI GCGC 3 cut(s) 83, 574, 1047
GluI GCNGC 3 cut(s) 395, 815, 818
HaeIII GGCC 3 cut(s) 30, 147, 279
HapII CCGG 1 cut(s) 911
HgaI GACGC 1 cut(s) 983
HhaI GCGC 3 cut(s) 84, 575, 1048
Hin1II CATG 5 cut(s) 172, 201, 221, 659, 989
Hin6I GCGC 3 cut(s) 82, 573, 1046
HinP1I GCGC 3 cut(s) 82, 573, 1046
HincII GTYRAC 3 cut(s) 178, 373, 480
HindII GTYRAC 3 cut(s) 178, 373, 480
HindIII AAGCTT 1 cut(s) 967
HinfI GANTC 6 cut(s) 65, 91, 329, 590, 794, 871
HpaI GTTAAC 1 cut(s) 178
HpaII CCGG 1 cut(s) 911
HphI GGTGA 2 cut(s) 86, 263
Hpy166II GTNNAC 7 cut(s) 111, 135, 178, 265, 373, 442, 480
Hpy188I TCNGA 4 cut(s) 313, 601, 799, 885
Hpy188III TCNNGA 4 cut(s) 284, 304, 665, 1027
Hpy8I GTNNAC 7 cut(s) 111, 135, 178, 265, 373, 442, 480
HpyAV CCTTC 3 cut(s) 456, 838, 880
HpyCH4III ACNGT 5 cut(s) 40, 233, 750, 997, 1086
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 6 cut(s) 59, 366, 724, 900, 916, 1042
HpyF10VI GCNNNNNNNGC 1 cut(s) 1054
HpyF3I CTNAG 3 cut(s) 15, 243, 269
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 5 cut(s) 172, 201, 221, 659, 989
HspAI GCGC 3 cut(s) 82, 573, 1046
KspAI GTTAAC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 101, 763
Lsp1109I GCAGC 3 cut(s) 381, 801, 804
LweI GCATC 2 cut(s) 46, 523
MaeI CTAG 2 cut(s) 299, 561
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 4 cut(s) 192, 227, 233, 651
MalI GATC 2 cut(s) 103, 765
MboI GATC 2 cut(s) 101, 763
MboII GAAGA 6 cut(s) 74, 147, 326, 441, 558, 1090
MfeI CAATTG 3 cut(s) 866, 917, 1037
MlsI TGGCCA 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 886
Mox20I TGGCCA 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 848
MscI TGGCCA 1 cut(s) 147
MseI TTAA 7 cut(s) 177, 336, 432, 501, 680, 932, 1074
MslI CAYNNNNRTG 2 cut(s) 222, 772
Msp20I TGGCCA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 911
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 3 cut(s) 866, 917, 1037
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 3 cut(s) 84, 575, 1048
MwoI GCNNNNNNNGC 1 cut(s) 1054
NcoI CCATGG 1 cut(s) 197
NdeII GATC 2 cut(s) 101, 763
NlaIII CATG 5 cut(s) 172, 201, 221, 659, 989
NlaIV GGNNCC 2 cut(s) 29, 321
NmuCI GTSAC 1 cut(s) 651
NspI RCATGY 1 cut(s) 172
PctI GAATGC 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 848
PfeI GAWTC 5 cut(s) 91, 329, 590, 794, 871
PkrI GCNGC 3 cut(s) 396, 816, 819
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 320
PshBI ATTAAT 1 cut(s) 932
PsiI TTATAA 1 cut(s) 831
Psp5II RGGWCCY 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 397
PspEI GGTNACC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 29, 321
PspPI GGNCC 4 cut(s) 28, 277, 320, 555
PspPPI RGGWCCY 1 cut(s) 320
RsaI GTAC 3 cut(s) 136, 698, 923
RsaNI GTAC 3 cut(s) 135, 697, 922
RseI CAYNNNNRTG 2 cut(s) 222, 772
SaqAI TTAA 7 cut(s) 177, 336, 432, 501, 680, 932, 1074
SatI GCNGC 3 cut(s) 395, 815, 818
Sau3AI GATC 2 cut(s) 101, 763
Sau96I GGNCC 4 cut(s) 28, 277, 320, 555
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 399
SfaNI GCATC 2 cut(s) 46, 523
SinI GGWCC 2 cut(s) 320, 555
SmiMI CAYNNNNRTG 2 cut(s) 222, 772
SpeI ACTAGT 1 cut(s) 298
SsiI CCGC 5 cut(s) 183, 356, 575, 890, 1048
SspMI CTAG 2 cut(s) 299, 561
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 4 cut(s) 197, 323, 674, 731
TaaI ACNGT 5 cut(s) 40, 233, 750, 997, 1086
TaiI ACGT 1 cut(s) 527
TaqI TCGA 3 cut(s) 212, 381, 941
TfiI GAWTC 5 cut(s) 91, 329, 590, 794, 871
Tru1I TTAA 7 cut(s) 177, 336, 432, 501, 680, 932, 1074
Tru9I TTAA 7 cut(s) 177, 336, 432, 501, 680, 932, 1074
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 651
TseI GCWGC 3 cut(s) 394, 814, 817
Tsp45I GTSAC 1 cut(s) 651
TspDTI ATGAA 3 cut(s) 270, 499, 726
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 320, 555
VspI ATTAAT 1 cut(s) 932
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 2 cut(s) 307, 434
XceI RCATGY 1 cut(s) 172
XmiI GTMKAC 3 cut(s) 110, 264, 441
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 2 cut(s) 299, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.