Rmu_sc0002268.1_g000015

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002268.1
OG0003305
Physical Location & Seq
Reverse (-)
62456 .. 72571
10116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002268.1_g000015.1.cds

Sequence Viewer

Length: 4779 bp
atggatccttggaagtgcactccgtttggtggtgcaaattctcttcatatggcaccttcaaatatattaagtaaggtgaatgagagggctaaatttgaaaaagaagagagggatacaggtcacactgttgaggctggagtagatatagatattagagaagtatactttctgattatgcactttctatctgttgggccatgtcggaggacttttgaacaatttgcaaatgatcttgtggaacatgagctcctgcctagaaggtatcatgctttgttttcaagaagcggtgtaagcagtagcaatgataatgataataacacctctttcccactgagttacaccaaattggttgaaaggtatcctcatatagagaaggatcacttggtaaagcttctaaagcaactgatgttgagtatagctactcctttgcatggcaaggttggaagaaatactctgaatgcagctgatgtccctacattattgggaactggttctttctcgcttctggattgtgataggaatgtggtgaataggcgagttaagccgcttcctgcttacctgcgttggccttacatgcaggctggtcaagttcatggacttggtttaagggaagttggaggaggttttgctaagcatcatcgtgcaccatctattcgctctgcatgctatgccattgctaaaccatcaactatggtgcaaaagatgaacaacaaaaagaagctaagggggcaccgtaatgctgtctattgtgccatttttgatcggtcggggagatatgttatcactggatcggatgatcgtcttgtcaagatttggtcaatggaaactgcactttgcttggctagctgtcgtggacatgaaggtgacattactgacttggctgtgagttcaaacaacactttggtggcttctgcatcaaatgattttgttattcgagtttggcgtttgccagatggatatcccatttccgttctgcagggccatactggagctgtgactgctatagcatttagtccaaggcttagtgcaatttaccaacttttatcgtcatcagatgacgggacttgtcgaatttgggatgctaggtcctctcagtgccctccacgaatattcatgccaaaaccttcggaccctttaacagggaagagcaatggcatttcaagtcttggaccctcatcaagcagtggcccacagggccatcaaatactttgttgtgcttacaatgctagtggaactgtttttgtcaccggtagctctgacacttttgcccgggtatggagtgctgtgaaatctaatgcagatgactcagaacaaccaatacatgagatggatgtattgtctggccatgagaatgatgtcaattatgtgcaattcagtggttgtgccattccatcaaaatcttcattttctgactctttgaaggaggagaatattatgaagtccaaaaattcctggttttgtcacaacaacatcgttacctgctctcgcgatggcagtgccattatatgggttccaaaatcacacagatcacatgggaaatttggacgatggattcgtgcttaccatctcaaagttccacctcccccactgcctcctcaacctcctcgaggtggcccacgtcagagatttcttcctacccctcgtggtgttaacatgattgtatggagcctggataaccgctttgtgcttgcagctatcatggattgcagaatctgcgtttggaatgctgttgatggtagcttagtacattctttgaccggtcataatgcatcttcttatgttttggatgttcatccctttaatcctcggattgctatgagtgctgggtatgatggacaaacaatcatatgggatatctgggaaggaacacccatcaagatttatgaagttggacatgttaagttggttgatgggaagttttctgcggatgggacatcgattgtactttcagatgatgtgggccaaatatatttaataaacacaggtgaaggagagtcccagaaagatgctaaatatgatcagttcttcctaggagattatcggccccttgtgcgggatactgctggacatcttcttgatcaggagacacaacttcctgcttatcgaaggaatcttcaagatcctctctgcgattcaagtatgattccatatccagagccataccagagtcaataccagcggcggcgacttggtgcattgggaatggagtggaaaccttcatcagtaaattttgcagttggcctggatattggtgcaggcatggactatcatttgcctcctttgcccgattgggagagagtgatagagccacttccagacttcatcgacgccttgctatgggagccagaaaatgaattcataagtgaagatactgattcagattttaatgtcactgaggaaaattctagtgaagatgagaaaggaaatattagcaccagctcttctagtgctccagaatgcagtgcagaagacagtgaagttggatgcagcaataaggatggccttcgcagatcaagaagaaaaacacaaaaggtcacctcttctgagagacgtgggaagaaaaggaatttgggtgaggaggatgggattatatctgggagtaatagaattaaaaatccaaaaagtggccgaaaagtttcaaagaggaactgtagagcaaaaacgtcaagaccccagagagttgcagcacggaatgctcgaaatgtgctttctcagaatccgggaacatctacagatggagaagaagatgactgggaagctgattcatcagatagtgagccacagcagaaaaagttccgtagtcaaagcaatgagtgtgatggaagcttccagaatatgcaagagttacagaataatgaaaaactatctcttcgtgagattcatgatatagccaatcctcttgctgttcctgactctcaaacaaatgttacaagaaaaaaattggttttgaagcttccgctccgtcgtgatttgaagaagcaagaagctccgcaggattcttcatcttctagatatcgcgaagtcggtcaagataagaagattaataatagctctgtggatggagcttcatctttggcagatgcacttgatgcgttctctggaaatttcatgagcaatgtatttacagatcctgggcaaaccgtagaggctgggtttcctttggaggcatcttcatgtgacatggagaacaaaattaggtggggagaggtcaagacacggacatcaaagcacacaagatcaggagatcccataccaattgatccagccgctgggtcgcttgtcagttctgaagtccatatggcagagaaaaatgtcgttcgggataaggaacatattagagagttttctcatgaatcaacgtcaaaaggttctggaataaaacactctgatgaatcaatggataatgcttcccttaagtttcttgcacaagaaacaggttctgggaacttaatgcctgaagatccttcatgcatggaccggaatttaaatctggaagtaccagaaatgggtggaggttctggcacattgagttcgtggagatttttctgcaaggataggacaaaaacagaagggtttgatggtaaattggaagaaaatacttctcgtatcaatgatcattatgatgcaggaatgaatctccctgaagctgcaactgattcagcacgcaggctaagaaccttaaagatcaaggcaacttcacgggaaccagactctgtgagccgtatccctaagtcgagagggggccagcaaaggacatctatagatgcagaagatccccctgccaaggtccgtgatacaagacttcagagatcaaggtccactagaaatcagtctgaccaaagtttgtcaacccaaaggttgttggataaccctgttggaaaactttcatggctgatgttgtctaaacacgaggaaggttaccgttatattcctcagctaggtgatgaagttgtatacttgagacagggtcatcaagagtatacggaattggctttgcagtcagatcaaggcccttggggtccgtggggatcaatgaaggaaaaaatcagagctgtggaaatctgcaaggttgtaggcctcgagtatgactccatgcctggttcaggggaaagctgtagcaagatcttattcagatttgtggagtcttcttctgccgtgtgtggtaaaaccttcaaattaacattgcctgaaattgactttaatgacttcatagttgagaaaagctggtatgatgccgccattggaagaaactgggcagcgggagaacactgtgaggtctggtggagagactcagatggaggcggagcgtggtggcaaggccgaattgtgcactgtcaggcgaaatctcatgagtttcctgatagcccgtggttaagatacgcggttaggtatgagaatgaagatgatatacctcataggcattgtccttgggaactgcatgatgtatccatgtcttgggaagcaccgcatattgatcatgaaagcagagataagctgcttcactatttttctaaatcggagaagaaggactttgaggccatccaacaaatgaatcaagctgttctgaaggtggatttctgcaacagctttcctgtccaattgtaccctgaactaatcaaagcaaggttaaagaatgactattataggagcttggaagcagtgaagcatgacataacccagatgctagaaaacgtccggcattacttcaagagaaataacttgcaagccaggattaagcacctttcaaaatggtttaagaaaaaaatttctaggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1592

Amino Acids

178.7

Weight (kDa)

6.97

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1605
Acc36I ACCTGC 2 cut(s) 567, 1487
AccB1I GGYRCC 2 cut(s) 52, 729
AccB7I CCANNNNNTGG 4 cut(s) 1506, 2624, 3269, 4455
AccBSI CCGCTC 1 cut(s) 2959
AccI GTMKAC 3 cut(s) 162, 3954, 3980
AccII CGCG 3 cut(s) 1488, 3018, 4382
AcoI YGGCCR 2 cut(s) 1342, 2626
AcuI CTGAAG 5 cut(s) 3309, 3477, 3663, 3788, 4586
AcyI GRCGYC 1 cut(s) 2328
AfaI GTAC 4 cut(s) 1746, 1944, 3498, 4604
AflII CTTAAG 1 cut(s) 3413
AflIII ACRYGT 1 cut(s) 1894
AgeI ACCGGT 2 cut(s) 1247, 1757
AjiI CACGTC 2 cut(s) 1619, 2552
AjnI CCWGG 6 cut(s) 1451, 1668, 2241, 3130, 4096, 4727
AjuI GAANNNNNNNTTGG 6 cut(s) 365, 397, 1702, 1734, 2552, 2584
AleI CACNNNNGTG 1 cut(s) 902
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
Alw21I GWGCWC 5 cut(s) 20, 249, 646, 2452, 4332
Alw26I GTCTC 4 cut(s) 2078, 2542, 3955, 4281
Alw44I GTGCAC 3 cut(s) 16, 642, 4328
AlwNI CAGNNNCTG 5 cut(s) 1713, 3131, 3269, 3440, 3713
Ama87I CYCGRG 3 cut(s) 1269, 1605, 4079
ApaLI GTGCAC 3 cut(s) 16, 642, 4328
ApeKI GCWGC 7 cut(s) 461, 1691, 2487, 2684, 3647, 4256, 4495
ArsI GACNNNNNNTTYG 2 cut(s) 1536, 1568
AseI ATTAAT 1 cut(s) 3042
AsiGI ACCGGT 2 cut(s) 1247, 1757
Asp700I GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3883
AspA2I CCTAGG 1 cut(s) 2029
AsuC2I CCSGG 3 cut(s) 1270, 1271, 2721
AsuHPI GGTGA 8 cut(s) 88, 538, 875, 1237, 1997, 2527, 2585, 3953
AsuNHI GCTAGC 1 cut(s) 842
AvaI CYCGRG 3 cut(s) 1269, 1605, 4079
AvaII GGWCC 7 cut(s) 1086, 1129, 1169, 3475, 3787, 3816, 4019
AvrII CCTAGG 1 cut(s) 2029
BaeGI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4332
BalI TGGCCA 1 cut(s) 1344
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 52, 729
BanII GRGCYC 1 cut(s) 249
BarI GAAGNNNNNNTAC 2 cut(s) 4392, 4424
BauI CACGAG 2 cut(s) 1641, 3908
BbsI GAAGAC 2 cut(s) 2475, 4137
Bbv12I GWGCWC 5 cut(s) 20, 249, 646, 2452, 4332
BbvCI CCTCAGC 1 cut(s) 3933
BbvI GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3634, 4268, 4482
BceAI ACGGC 2 cut(s) 3705, 4139
BcgI CGANNNNNNTGC 2 cut(s) 1478, 1512
BciT130I CCWGG 6 cut(s) 1453, 1670, 2243, 3132, 4098, 4729
BciVI GTATCC 5 cut(s) 106, 369, 2050, 3734, 4456
BclI TGATCA 4 cut(s) 2017, 2077, 3613, 4474
BcnI CCSGG 3 cut(s) 1270, 1271, 2721
BcoDI GTCTC 4 cut(s) 2078, 2542, 3955, 4281
BfmI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 3759, 4114
BfrI CTTAAG 1 cut(s) 3413
BfuAI ACCTGC 2 cut(s) 567, 1487
BfuI GTATCC 5 cut(s) 106, 369, 2050, 3734, 4456
BglI GCCNNNNNGGC 1 cut(s) 1194
BglII AGATCT 1 cut(s) 4122
BlnI CCTAGG 1 cut(s) 2029
BlpI GCTNAGC 1 cut(s) 630
Bme1390I CCNGG 9 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3132, 4098, 4729
Bme18I GGWCC 7 cut(s) 1086, 1129, 1169, 3475, 3787, 3816, 4019
BmeT110I CYCGRG 3 cut(s) 1269, 1605, 4079
BmgBI CACGTC 2 cut(s) 1619, 2552
BmrFI CCNGG 9 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3132, 4098, 4729
BmrI ACTGGG 2 cut(s) 2761, 4261
BmtI GCTAGC 1 cut(s) 846
BmuI ACTGGG 2 cut(s) 2761, 4261
BpiI GAAGAC 2 cut(s) 2475, 4137
BplI GAGNNNNNCTC 2 cut(s) 4073, 4105
BpmI CTGGAG 3 cut(s) 156, 1008, 2436
Bpu10I CCTNAGC 2 cut(s) 722, 3933
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 3979
BpuMI CCSGG 3 cut(s) 1270, 1271, 2721
Bsa29I ATCGAT 1 cut(s) 1937
BsaBI GATNNNNATC 2 cut(s) 957, 1791
BsaHI GRCGYC 1 cut(s) 2328
BsaWI WCCGGW 3 cut(s) 1247, 1757, 3477
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse118I RCCGGY 2 cut(s) 1247, 1757
Bse1I ACTGG 5 cut(s) 493, 790, 991, 2756, 4256
Bse3DI GCAATG 6 cut(s) 307, 672, 1156, 2815, 3121, 4181
Bse8I GATNNNNATC 2 cut(s) 957, 1791
BseBI CCWGG 6 cut(s) 1453, 1670, 2243, 3132, 4098, 4729
BseCI ATCGAT 1 cut(s) 1937
BseJI GATNNNNATC 2 cut(s) 957, 1791
BseMI GCAATG 6 cut(s) 307, 672, 1156, 2815, 3121, 4181
BseMII CTCAG 8 cut(s) 323, 1106, 1320, 2385, 2535, 2726, 3947, 4305
BseNI ACTGG 5 cut(s) 493, 790, 991, 2756, 4256
BseRI GAGGAG 5 cut(s) 633, 1439, 1584, 1593, 2591
BseSI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4332
BseXI GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3634, 4268, 4482
BseYI CCCAGC 3 cut(s) 1823, 3149, 3269
BsgI GTGCAG 3 cut(s) 813, 2274, 2484
Bsh1236I CGCG 3 cut(s) 1488, 3018, 4382
Bsh1285I CGRYCG 1 cut(s) 767
BshNI GGYRCC 2 cut(s) 52, 729
BshTI ACCGGT 2 cut(s) 1247, 1757
BshVI ATCGAT 1 cut(s) 1937
BsiEI CGRYCG 1 cut(s) 767
BsiHKAI GWGCWC 5 cut(s) 20, 249, 646, 2452, 4332
BsiHKCI CYCGRG 3 cut(s) 1269, 1605, 4079
BsiSI CCGG 6 cut(s) 1248, 1270, 1758, 2720, 3478, 4696
BslFI GGGAC 4 cut(s) 455, 1075, 1945, 1981
BsmAI GTCTC 4 cut(s) 2078, 2542, 3955, 4281
BsmBI CGTCTC 1 cut(s) 2542
BsmFI GGGAC 4 cut(s) 455, 1075, 1945, 1981
BsmI GAATGC 4 cut(s) 463, 1729, 2462, 2698
BsoBI CYCGRG 3 cut(s) 1269, 1605, 4079
Bsp1286I GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4332
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp68I TCGCGA 2 cut(s) 1488, 3018
BspCNI CTCAG 8 cut(s) 324, 1105, 1319, 2386, 2536, 2725, 3946, 4304
BspDI ATCGAT 1 cut(s) 1937
BspFNI CGCG 3 cut(s) 1488, 3018, 4382
BspHI TCATGA 5 cut(s) 2881, 3108, 3349, 4348, 4477
BspMAI CTGCAG 1 cut(s) 978
BspMI ACCTGC 2 cut(s) 567, 1487
BspOI GCTAGC 1 cut(s) 846
BspQI GCTCTTC 2 cut(s) 1139, 2446
BspT107I GGYRCC 2 cut(s) 52, 729
BspTI CTTAAG 1 cut(s) 3413
BsrBI CCGCTC 1 cut(s) 2959
BsrDI GCAATG 6 cut(s) 307, 672, 1156, 2815, 3121, 4181
BsrFI RCCGGY 2 cut(s) 1247, 1757
BsrI ACTGG 5 cut(s) 493, 790, 991, 2756, 4256
BssAI RCCGGY 2 cut(s) 1247, 1757
BssNAI GTATAC 3 cut(s) 163, 3955, 3981
BssNI GRCGYC 1 cut(s) 2328
BssSI CACGAG 2 cut(s) 1641, 3908
BssT1I CCWWGG 6 cut(s) 8, 1016, 2029, 3783, 4013, 4427
Bst1107I GTATAC 3 cut(s) 163, 3955, 3981
Bst2BI CACGAG 2 cut(s) 1641, 3908
Bst2UI CCWGG 6 cut(s) 1453, 1670, 2243, 3132, 4098, 4729
Bst4CI ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3142, 3923, 4271, 4334
Bst6I CTCTTC 6 cut(s) 48, 99, 1139, 2446, 2545, 2874
BstACI GRCGYC 1 cut(s) 2328
BstAFI CTTAAG 1 cut(s) 3413
BstAPI GCANNNNNTGC 4 cut(s) 668, 1713, 2693, 3089
BstC8I GCNNGC 9 cut(s) 579, 664, 844, 1689, 2257, 3664, 3668, 3746, 4725
BstDSI CCRYGG 2 cut(s) 4022, 4367
BstEII GGTNACC 2 cut(s) 2533, 3917
BstENI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3936, 4101
BstFNI CGCG 3 cut(s) 1488, 3018, 4382
BstMAI GTCTC 4 cut(s) 2078, 2542, 3955, 4281
BstMCI CGRYCG 1 cut(s) 767
BstNI CCWGG 6 cut(s) 1453, 1670, 2243, 3132, 4098, 4729
BstNSI RCATGY 3 cut(s) 577, 666, 1898
BstPI GGTNACC 2 cut(s) 2533, 3917
BstSCI CCNGG 9 cut(s) 1268, 1269, 1451, 1668, 2241, 2719, 3130, 4096, 4727
BstSFI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 3759, 4114
BstSLI GKGCMC 5 cut(s) 20, 646, 732, 1100, 4332
BstUI CGCG 3 cut(s) 1488, 3018, 4382
BstV1I GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3634, 4268, 4482
BstV2I GAAGAC 2 cut(s) 2475, 4137
BstX2I RGATCY 7 cut(s) 4, 2119, 3127, 3244, 3460, 3772, 4122
BstYI RGATCY 7 cut(s) 4, 2119, 3127, 3244, 3460, 3772, 4122
BstZ17I GTATAC 3 cut(s) 163, 3955, 3981
Bsu15I ATCGAT 1 cut(s) 1937
BsuI GTATCC 5 cut(s) 106, 369, 2050, 3734, 4456
BsuTUI ATCGAT 1 cut(s) 1937
BtgI CCRYGG 2 cut(s) 4022, 4367
BtgZI GCGATG 1 cut(s) 1503
BtrI CACGTC 2 cut(s) 1619, 2552
BtsI GCAGTG 5 cut(s) 1189, 1501, 1586, 2467, 4665
BtuMI TCGCGA 2 cut(s) 1488, 3018
BveI ACCTGC 2 cut(s) 567, 1487
Cac8I GCNNGC 9 cut(s) 579, 664, 844, 1689, 2257, 3664, 3668, 3746, 4725
CaiI CAGNNNCTG 5 cut(s) 1713, 3131, 3269, 3440, 3713
CciI TCATGA 5 cut(s) 2881, 3108, 3349, 4348, 4477
Cfr10I RCCGGY 2 cut(s) 1247, 1757
Cfr9I CCCGGG 1 cut(s) 1269
ClaI ATCGAT 1 cut(s) 1937
CseI GACGC 1 cut(s) 2336
Csp6I GTAC 4 cut(s) 1745, 1943, 3497, 4603
CspAI ACCGGT 2 cut(s) 1247, 1757
CspCI CAANNNNNGTGG 2 cut(s) 1210, 1245
CviQI GTAC 4 cut(s) 1745, 1943, 3497, 4603
DraI TTTAAA 1 cut(s) 3486
EaeI YGGCCR 2 cut(s) 1342, 2626
Eam1104I CTCTTC 6 cut(s) 48, 99, 1139, 2446, 2545, 2874
EarI CTCTTC 6 cut(s) 48, 99, 1139, 2446, 2545, 2874
EciI GGCGGA 1 cut(s) 4317
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 6 cut(s) 8, 1016, 2029, 3783, 4013, 4427
Eco147I AGGCCT 1 cut(s) 4077
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 3 cut(s) 959, 1855, 3014
Eco47I GGWCC 7 cut(s) 1086, 1129, 1169, 3475, 3787, 3816, 4019
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 5 cut(s) 3309, 3477, 3663, 3788, 4586
Eco88I CYCGRG 3 cut(s) 1269, 1605, 4079
Eco91I GGTNACC 2 cut(s) 2533, 3917
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3936, 4101
EcoO109I RGGNCCY 2 cut(s) 1086, 4010
EcoO65I GGTNACC 2 cut(s) 2533, 3917
EcoRI GAATTC 1 cut(s) 2354
EcoRII CCWGG 6 cut(s) 1451, 1668, 2241, 3130, 4096, 4727
EcoRV GATATC 3 cut(s) 959, 1855, 3014
EcoT14I CCWWGG 6 cut(s) 8, 1016, 2029, 3783, 4013, 4427
EcoT22I ATGCAT 2 cut(s) 1771, 3473
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 6 cut(s) 8, 1016, 2029, 3783, 4013, 4427
Esp3I CGTCTC 1 cut(s) 2542
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 4514, 4546
FaqI GGGAC 4 cut(s) 455, 1075, 1945, 1981
FauI CCCGC 2 cut(s) 2046, 4252
FauNDI CATATG 3 cut(s) 48, 1847, 3297
FbaI TGATCA 4 cut(s) 2017, 2077, 3613, 4474
FblI GTMKAC 3 cut(s) 162, 3954, 3980
FriOI GRGCYC 1 cut(s) 249
GsaI CCCAGC 3 cut(s) 1827, 3153, 3273
GsuI CTGGAG 3 cut(s) 156, 1008, 2436
HapII CCGG 6 cut(s) 1248, 1270, 1758, 2720, 3478, 4696
HgaI GACGC 1 cut(s) 2336
Hin1I GRCGYC 1 cut(s) 2328
HincII GTYRAC 2 cut(s) 1651, 3849
HindII GTYRAC 2 cut(s) 1651, 3849
HindIII AAGCTT 3 cut(s) 389, 2824, 2951
HpaI GTTAAC 1 cut(s) 1651
HpaII CCGG 6 cut(s) 1248, 1270, 1758, 2720, 3478, 4696
HphI GGTGA 8 cut(s) 88, 538, 875, 1237, 1997, 2527, 2585, 3953
Hpy99I CGWCG 2 cut(s) 2330, 2967
HpyCH4III ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3142, 3923, 4271, 4334
HpyCH4IV ACGT 5 cut(s) 1618, 2551, 2663, 3359, 4692
HpySE526I ACGT 5 cut(s) 1618, 2551, 2663, 3359, 4692
Hsp92I GRCGYC 1 cut(s) 2328
Ksp22I TGATCA 4 cut(s) 2017, 2077, 3613, 4474
KspAI GTTAAC 1 cut(s) 1651
LguI GCTCTTC 2 cut(s) 1139, 2446
Lsp1109I GCAGC 7 cut(s) 473, 1703, 2499, 2696, 3634, 4268, 4482
MaeII ACGT 5 cut(s) 1618, 2551, 2663, 3359, 4692
MbiI CCGCTC 1 cut(s) 2959
MfeI CAATTG 2 cut(s) 3255, 4598
MflI RGATCY 7 cut(s) 4, 2119, 3127, 3244, 3460, 3772, 4122
MhlI GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4332
MlsI TGGCCA 1 cut(s) 1344
MluNI TGGCCA 1 cut(s) 1344
MlyI GAGTC 9 cut(s) 1298, 1406, 2003, 2176, 2906, 3704, 4082, 4151, 4283
MmeI TCCRAC 8 cut(s) 182, 421, 595, 1870, 2461, 3843, 3856, 4567
Mox20I TGGCCA 1 cut(s) 1344
Mph1103I ATGCAT 2 cut(s) 1771, 3473
MroXI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3883
MscI TGGCCA 1 cut(s) 1344
MslI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 3172, 3387, 3621
Msp20I TGGCCA 1 cut(s) 1344
MspA1I CMGCKG 4 cut(s) 464, 2179, 3269, 4259
MspCI CTTAAG 1 cut(s) 3413
MspI CCGG 6 cut(s) 1248, 1270, 1758, 2720, 3478, 4696
MspR9I CCNGG 9 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3132, 4098, 4729
MunI CAATTG 2 cut(s) 3255, 4598
Mva1269I GAATGC 4 cut(s) 463, 1729, 2462, 2698
MvaI CCWGG 6 cut(s) 1453, 1670, 2243, 3132, 4098, 4729
MvnI CGCG 3 cut(s) 1488, 3018, 4382
NciI CCSGG 3 cut(s) 1270, 1271, 2721
NdeI CATATG 3 cut(s) 48, 1847, 3297
NheI GCTAGC 1 cut(s) 842
NmuCI GTSAC 8 cut(s) 119, 863, 994, 1243, 1460, 2389, 2533, 3176
NruI TCGCGA 2 cut(s) 1488, 3018
NsiI ATGCAT 2 cut(s) 1771, 3473
NspI RCATGY 3 cut(s) 577, 666, 1898
OliI CACNNNNGTG 1 cut(s) 902
PaeI GCATGC 1 cut(s) 666
PaeR7I CTCGAG 2 cut(s) 1605, 4079
PagI TCATGA 5 cut(s) 2881, 3108, 3349, 4348, 4477
PceI AGGCCT 1 cut(s) 4077
PciI ACATGT 1 cut(s) 1894
PciSI GCTCTTC 2 cut(s) 1139, 2446
PcsI WCGNNNNNNNCGW 3 cut(s) 940, 1552, 2695
PctI GAATGC 4 cut(s) 463, 1729, 2462, 2698
PdmI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3883
PflFI GACNNNGTC 1 cut(s) 3966
PflMI CCANNNNNTGG 4 cut(s) 1506, 2624, 3269, 4455
PfoI TCCNGGA 1 cut(s) 2719
PinAI ACCGGT 2 cut(s) 1247, 1757
PleI GAGTC 9 cut(s) 1298, 1406, 2002, 2175, 2906, 3704, 4082, 4150, 4283
PpsI GAGTC 9 cut(s) 1298, 1406, 2002, 2175, 2906, 3704, 4082, 4150, 4283
PpuMI RGGWCCY 1 cut(s) 1086
PscI ACATGT 1 cut(s) 1894
PshBI ATTAAT 1 cut(s) 3042
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 1086
Psp6I CCWGG 6 cut(s) 1451, 1668, 2241, 3130, 4096, 4727
PspEI GGTNACC 2 cut(s) 2533, 3917
PspFI CCCAGC 3 cut(s) 1823, 3149, 3269
PspGI CCWGG 6 cut(s) 1451, 1668, 2241, 3130, 4096, 4727
PspPPI RGGWCCY 1 cut(s) 1086
PspXI VCTCGAGB 2 cut(s) 1605, 4079
PsrI GAACNNNNNNTAC 2 cut(s) 1302, 1334
PstI CTGCAG 1 cut(s) 978
PstNI CAGNNNCTG 5 cut(s) 1713, 3131, 3269, 3440, 3713
PsuI RGATCY 7 cut(s) 4, 2119, 3127, 3244, 3460, 3772, 4122
PsyI GACNNNGTC 1 cut(s) 3966
PvuII CAGCTG 1 cut(s) 464
RruI TCGCGA 2 cut(s) 1488, 3018
RsaI GTAC 4 cut(s) 1746, 1944, 3498, 4604
RsaNI GTAC 4 cut(s) 1745, 1943, 3497, 4603
RseI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 3172, 3387, 3621
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 2 cut(s) 1139, 2446
SchI GAGTC 9 cut(s) 1298, 1406, 2003, 2176, 2906, 3704, 4082, 4151, 4283
ScrFI CCNGG 9 cut(s) 1270, 1271, 1453, 1670, 2243, 2721, 3132, 4098, 4729
SduI GDGCHC 7 cut(s) 20, 249, 646, 732, 1100, 2452, 4332
SfcI CTRYAG 6 cut(s) 974, 1002, 2650, 2730, 3759, 4114
SfiI GGCCNNNNNGGCC 1 cut(s) 1194
Sfr274I CTCGAG 2 cut(s) 1605, 4079
SinI GGWCC 7 cut(s) 1086, 1129, 1169, 3475, 3787, 3816, 4019
SlaI CTCGAG 2 cut(s) 1605, 4079
SmaI CCCGGG 1 cut(s) 1271
SmiI ATTTAAAT 1 cut(s) 3486
SmiMI CAYNNNNRTG 8 cut(s) 639, 735, 861, 902, 1350, 3172, 3387, 3621
SmlI CTYRAG 4 cut(s) 1605, 3413, 3958, 4079
SmoI CTYRAG 4 cut(s) 1605, 3413, 3958, 4079
SphI GCATGC 1 cut(s) 666
SseBI AGGCCT 1 cut(s) 4077
SspI AATATT 3 cut(s) 1110, 1432, 2428
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 4077
StyD4I CCNGG 9 cut(s) 1268, 1269, 1451, 1668, 2241, 2719, 3130, 4096, 4727
StyI CCWWGG 6 cut(s) 8, 1016, 2029, 3783, 4013, 4427
SwaI ATTTAAAT 1 cut(s) 3486
TaaI ACNGT 9 cut(s) 127, 734, 1237, 2474, 2651, 3142, 3923, 4271, 4334
TaiI ACGT 5 cut(s) 1621, 2554, 2666, 3362, 4695
TaqI TCGA 9 cut(s) 934, 1069, 1606, 1937, 2104, 2325, 2698, 3734, 4080
TaqII GACCGA 2 cut(s) 753, 3014
TatI WGTACW 2 cut(s) 1744, 1942
TauI GCSGC 5 cut(s) 547, 2182, 2185, 3269, 4238
TseFI GTSAC 8 cut(s) 119, 863, 994, 1243, 1460, 2389, 2533, 3176
TseI GCWGC 7 cut(s) 461, 1691, 2487, 2684, 3647, 4256, 4495
Tsp45I GTSAC 8 cut(s) 119, 863, 994, 1243, 1460, 2389, 2533, 3176
TspGWI ACGGA 9 cut(s) 12, 958, 2704, 2786, 2951, 3232, 3779, 3998, 4011
TspMI CCCGGG 1 cut(s) 1269
Tth111I GACNNNGTC 1 cut(s) 3966
Van91I CCANNNNNTGG 4 cut(s) 1506, 2624, 3269, 4455
Vha464I CTTAAG 1 cut(s) 3413
VneI GTGCAC 3 cut(s) 16, 642, 4328
VpaK11BI GGWCC 7 cut(s) 1086, 1129, 1169, 3475, 3787, 3816, 4019
VspI ATTAAT 1 cut(s) 3042
XagI CCTNNNNNAGG 4 cut(s) 1137, 1605, 3936, 4101
XbaI TCTAGA 1 cut(s) 3008
XceI RCATGY 3 cut(s) 577, 666, 1898
XhoI CTCGAG 2 cut(s) 1605, 4079
XmaI CCCGGG 1 cut(s) 1269
XmaJI CCTAGG 1 cut(s) 2029
XmiI GTMKAC 3 cut(s) 162, 3954, 3980
XmnI GAANNNNTTC 4 cut(s) 490, 2635, 2792, 3883
Zsp2I ATGCAT 2 cut(s) 1771, 3473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.