Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Forward (+)

188321 .. 190892

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCGGCGGCGTTTGCCTCTCTTCCCACATTTAGTGTCGTCAATTCCTCCAGATTTCCCAGAAGAAGAATCGGTTTTTCTTGCTCCAAAAAGCCCCTCGAAGTTCGTTGTTCTTCCGGCAATACTCGTTACACTAAGCAGAGAGGGGCATTTACATCACTGAAAGAATGTGCGATTTCATTAGCTTTATCGGTTGGTTTAATGGTTTCAGTACCTTCGATTGCTTTGCCTCCCAATGCTCACGCAGTGGCGAATCCAGTGATTCCAGATGTTTCAGTGTTGATCTCCGGTCCTCCGATTAAAGATCCGGAAGCTTTACTAAGATATGCATTGCCTATTGACAACAAAGCCATCAGGGAAGTGCAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATGATTGAAAAGTTGGAAGCTGGGATGCAAGATATGCTTAAGATAGTGGAAGATCGAAAAAGAGACGCAGTTGCTCCAAAACAGAAAGAAATTCTCAAATATGTTGGCGGAATAGAAGAGGATATGGTTGATGGCTTTCCATATGAAGTGCCGGAAGAGTATCGGAACATGCCTCTCCTCAAGGGAAGAGCTAGTGTGGACATGAAGGTCAAGATCAAGGACAATCCCAACATCGAGGACTGTGTGTTCCGCATTGTTCTTGATGGTTATAACGCCCCTGTTACCGCCGGAAACTTTGTGGACTTGGTAGAGAGGCATTTCTACGATGGCATGGAGATCCAGAGATCTGATGGATTTGTGGTACAAACGGGAGATCCAGAGGGTCCTGCGGAAGGATTTATCGATCCAAGCACAGAGAAAACGAGGACGGTTCCTCTAGAGATTATGGTGACTGGAGAGAAAACGCCTTTTTACGGCTCAACTCTTGAAGAACTTGGTCTTTACAAGGCTCAGGTTGTGATTCCTTTCAACGCTTTTGGGACAATGGCAATGGCAAGAGAAGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAAGAGAGTGAGCTGACACCAAGCAATTCCAACATCTTGGATGGTCGTTACGCTGTCTTTGGTTACGTTACTGATAACGAAGATTTTCTAGCTGATCTTAAAGTTGGTGATGTTATCGAATCCATTCAAGTTGTCTCCGGTTTAGAGAACCTCGCTAACCCGAGTTACAAAATCGCCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

437

Amino Acids

47.98

Weight (kDa)

5.06

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	102 - 218	1.8e-45	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	258 - 323	4.7e-10	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AasI	GACNNNNNNGTC	1 cut(s)	731
Acc36I	ACCTGC	1 cut(s)	479
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	6 cut(s)	5, 8, 633, 775, 810, 914
AclWI	GGATC	6 cut(s)	299, 519, 856, 893, 923, 1114
AcsI	RAATTY	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	2 cut(s)	213, 888
AfiI	CCNNNNNNNGG	2 cut(s)	917, 998
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	431, 533, 1013, 1054, 1259
AloI	GAACNNNNNNTCC	2 cut(s)	755, 787
AluBI	AGCT	6 cut(s)	185, 314, 545, 716, 1144, 1223
AluI	AGCT	6 cut(s)	185, 314, 545, 716, 1144, 1223
Alw26I	GTCTC	2 cut(s)	582, 1270
AlwI	GGATC	6 cut(s)	299, 519, 856, 893, 923, 1114
Ama87I	CYCGRG	1 cut(s)	1291
Aor13HI	TCCGGA	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	463, 1126
ApoI	RAATTY	1 cut(s)	615
Asp700I	GAANNNNTTC	2 cut(s)	1215, 1254
AspS9I	GGNCC	2 cut(s)	290, 908
AsuHPI	GGTGA	2 cut(s)	985, 1250
AvaI	CYCGRG	1 cut(s)	1291
AvaII	GGWCC	2 cut(s)	290, 908
BbvI	GCAGC	2 cut(s)	475, 1113
BccI	CCATC	6 cut(s)	359, 650, 782, 845, 869, 1166
BceAI	ACGGC	1 cut(s)	1015
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BcoDI	GTCTC	2 cut(s)	582, 1270
BfaI	CTAG	4 cut(s)	419, 717, 962, 1220
BfrI	CTTAAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	869
BisI	GCNGC	4 cut(s)	6, 9, 464, 1127
BlsI	GCNGC	4 cut(s)	7, 10, 465, 1128
Bme18I	GGWCC	2 cut(s)	290, 908
BmeT110I	CYCGRG	1 cut(s)	1291
BmgT120I	GGNCC	2 cut(s)	290, 908
BmiI	GGNNCC	2 cut(s)	909, 957
BmsI	GCATC	1 cut(s)	540
BplI	GAGNNNNNCTC	2 cut(s)	1085, 1117
BpmI	CTGGAG	2 cut(s)	34, 999
Bpu10I	CCTNAGC	1 cut(s)	1035
BpuEI	CTTGAG	3 cut(s)	380, 395, 689
Bsa29I	ATCGAT	1 cut(s)	927
BsaWI	WCCGGW	3 cut(s)	287, 307, 1268
Bsc4I	CCNNNNNNNGG	2 cut(s)	917, 998
Bse118I	RCCGGY	1 cut(s)	1307
Bse1I	ACTGG	2 cut(s)	257, 982
Bse3DI	GCAATG	3 cut(s)	329, 458, 1080
BseAI	TCCGGA	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	927
BseGI	GGATG	2 cut(s)	555, 1177
BseLI	CCNNNNNNNGG	2 cut(s)	917, 998
BseMI	GCAATG	3 cut(s)	329, 458, 1080
BseMII	CTCAG	2 cut(s)	1049, 1116
BseNI	ACTGG	2 cut(s)	257, 982
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	475, 1113
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	927
BsiHKCI	CYCGRG	1 cut(s)	1291
BsiSI	CCGG	7 cut(s)	117, 288, 308, 677, 813, 1269, 1308
BslFI	GGGAC	1 cut(s)	1078
BslI	CCNNNNNNNGG	2 cut(s)	917, 998
BsmAI	GTCTC	2 cut(s)	582, 1270
BsmBI	CGTCTC	1 cut(s)	582
BsmFI	GGGAC	1 cut(s)	1078
BsoBI	CYCGRG	1 cut(s)	1291
Bsp13I	TCCGGA	1 cut(s)	307
BspACI	CCGC	6 cut(s)	5, 8, 633, 775, 810, 914
BspCNI	CTCAG	2 cut(s)	1048, 1115
BspDI	ATCGAT	1 cut(s)	927
BspEI	TCCGGA	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	909, 957
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	6 cut(s)	299, 519, 856, 893, 923, 1114
BspQI	GCTCTTC	1 cut(s)	706
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	3 cut(s)	329, 458, 1080
BsrFI	RCCGGY	1 cut(s)	1307
BsrI	ACTGG	2 cut(s)	257, 982
BssAI	RCCGGY	1 cut(s)	1307
Bst4CI	ACNGT	2 cut(s)	767, 955
Bst6I	CTCTTC	5 cut(s)	27, 636, 675, 706, 1080
BstAFI	CTTAAG	1 cut(s)	563
BstAPI	GCANNNNNTGC	2 cut(s)	494, 559
BstC8I	GCNNGC	2 cut(s)	406, 447
BstDEI	CTNAG	4 cut(s)	135, 320, 1035, 1102
BstENI	CCTNNNNNAGG	1 cut(s)	915
BstF5I	GGATG	2 cut(s)	555, 1177
BstMAI	GTCTC	2 cut(s)	582, 1270
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 494, 559
BstNSI	RCATGY	1 cut(s)	697
BstV1I	GCAGC	2 cut(s)	475, 1113
BstX2I	RGATCY	4 cut(s)	304, 861, 869, 898
BstXI	CCANNNNNNTGG	1 cut(s)	1168
BstYI	RGATCY	4 cut(s)	304, 861, 869, 898
Bsu15I	ATCGAT	1 cut(s)	927
BsuTUI	ATCGAT	1 cut(s)	927
BtsCI	GGATG	2 cut(s)	555, 1177
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	5 cut(s)	158, 252, 264, 282, 384
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	406, 447
Cfr10I	RCCGGY	1 cut(s)	1307
Cfr13I	GGNCC	2 cut(s)	290, 908
ClaI	ATCGAT	1 cut(s)	927
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	212, 887
CviAII	CATG	4 cut(s)	515, 694, 727, 856
CviQI	GTAC	2 cut(s)	212, 887
DdeI	CTNAG	4 cut(s)	135, 320, 1035, 1102
DraIII	CACNNNGTG	1 cut(s)	247
DrdI	GACNNNNNNGTC	1 cut(s)	731
DseDI	GACNNNNNNGTC	1 cut(s)	731
Eam1104I	CTCTTC	5 cut(s)	27, 636, 675, 706, 1080
EarI	CTCTTC	5 cut(s)	27, 636, 675, 706, 1080
EciI	GGCGGA	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	290, 908
Eco88I	CYCGRG	1 cut(s)	1291
EcoNI	CCTNNNNNAGG	1 cut(s)	915
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRV	GATATC	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	4 cut(s)	518, 697, 730, 859
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	4 cut(s)	514, 693, 726, 855
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	6, 9, 464, 1127
FokI	GGATG	2 cut(s)	562, 1184
Fsp4HI	GCNGC	4 cut(s)	6, 9, 464, 1127
FspBI	CTAG	4 cut(s)	419, 717, 962, 1220
GluI	GCNGC	4 cut(s)	6, 9, 464, 1127
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	34, 999
HapII	CCGG	7 cut(s)	117, 288, 308, 677, 813, 1269, 1308
HgaI	GACGC	1 cut(s)	599
Hin1II	CATG	4 cut(s)	518, 697, 730, 859
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	8 cut(s)	69, 253, 262, 422, 500, 1045, 1100, 1250
HpaII	CCGG	7 cut(s)	117, 288, 308, 677, 813, 1269, 1308
HphI	GGTGA	2 cut(s)	985, 1250
Hpy166II	GTNNAC	2 cut(s)	724, 826
Hpy188I	TCNGA	3 cut(s)	297, 690, 874
Hpy8I	GTNNAC	2 cut(s)	724, 826
HpyAV	CCTTC	4 cut(s)	225, 502, 724, 911
HpyCH4III	ACNGT	2 cut(s)	767, 955
HpyCH4IV	ACGT	1 cut(s)	1197
HpyCH4V	TGCA	4 cut(s)	329, 364, 463, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 494, 559
HpyF3I	CTNAG	4 cut(s)	135, 320, 1035, 1102
HpySE526I	ACGT	1 cut(s)	1197
Hsp92II	CATG	4 cut(s)	518, 697, 730, 859
Kpn2I	TCCGGA	1 cut(s)	307
LguI	GCTCTTC	1 cut(s)	706
LmnI	GCTCC	2 cut(s)	89, 604
Lsp1109I	GCAGC	2 cut(s)	475, 1113
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	4 cut(s)	419, 717, 962, 1220
MaeII	ACGT	1 cut(s)	1197
MaeIII	GTNAC	7 cut(s)	128, 805, 973, 1178, 1193, 1198, 1295
MflI	RGATCY	4 cut(s)	304, 861, 869, 898
MluCI	AATT	4 cut(s)	43, 480, 615, 1156
MlyI	GAGTC	1 cut(s)	1094
MmeI	TCCRAC	2 cut(s)	519, 1185
Mph1103I	ATGCAT	1 cut(s)	331
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	2 cut(s)	1215, 1254
MseI	TTAA	6 cut(s)	200, 300, 411, 564, 1230, 1312
MslI	CAYNNNNRTG	1 cut(s)	519
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	7 cut(s)	117, 288, 308, 677, 813, 1269, 1308
MwoI	GCNNNNNNNGC	3 cut(s)	14, 494, 559
NdeI	CATATG	1 cut(s)	667
NlaIII	CATG	4 cut(s)	518, 697, 730, 859
NlaIV	GGNNCC	2 cut(s)	909, 957
NmuCI	GTSAC	1 cut(s)	973
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	706
PdmI	GAANNNNTTC	2 cut(s)	1215, 1254
PfeI	GAWTC	7 cut(s)	69, 253, 262, 422, 500, 1045, 1250
PkrI	GCNGC	4 cut(s)	7, 10, 465, 1128
PleI	GAGTC	1 cut(s)	1094
PpsI	GAGTC	1 cut(s)	1094
PpuMI	RGGWCCY	1 cut(s)	908
PsiI	TTATAA	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	908
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	909, 957
PspPI	GGNCC	2 cut(s)	290, 908
PspPPI	RGGWCCY	1 cut(s)	908
PsuI	RGATCY	4 cut(s)	304, 861, 869, 898
RsaI	GTAC	2 cut(s)	213, 888
RsaNI	GTAC	2 cut(s)	212, 887
RseI	CAYNNNNRTG	1 cut(s)	519
SapI	GCTCTTC	1 cut(s)	706
SaqAI	TTAA	6 cut(s)	200, 300, 411, 564, 1230, 1312
SatI	GCNGC	4 cut(s)	6, 9, 464, 1127
Sau96I	GGNCC	2 cut(s)	290, 908
SchI	GAGTC	1 cut(s)	1094
SfaNI	GCATC	1 cut(s)	540
SinI	GGWCC	2 cut(s)	290, 908
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	4 cut(s)	374, 395, 563, 704
SmoI	CTYRAG	4 cut(s)	374, 395, 563, 704
Sse9I	AATT	4 cut(s)	43, 480, 615, 1156
SsiI	CCGC	6 cut(s)	5, 8, 633, 775, 810, 914
SspMI	CTAG	4 cut(s)	419, 717, 962, 1220
TaaI	ACNGT	2 cut(s)	767, 955
TaiI	ACGT	1 cut(s)	1200
TaqI	TCGA	7 cut(s)	99, 218, 503, 580, 759, 927, 1248
TasI	AATT	4 cut(s)	43, 480, 615, 1156
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	7 cut(s)	69, 253, 262, 422, 500, 1045, 1250
Tru1I	TTAA	6 cut(s)	200, 300, 411, 564, 1230, 1312
Tru9I	TTAA	6 cut(s)	200, 300, 411, 564, 1230, 1312
TscAI	CASTG	5 cut(s)	165, 252, 264, 282, 391
TseFI	GTSAC	1 cut(s)	973
TseI	GCWGC	2 cut(s)	463, 1126
Tsp45I	GTSAC	1 cut(s)	973
TspDTI	ATGAA	4 cut(s)	168, 537, 684, 743
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	5 cut(s)	165, 252, 264, 282, 391
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	290, 908
XagI	CCTNNNNNAGG	1 cut(s)	915
XapI	RAATTY	1 cut(s)	615
XbaI	TCTAGA	2 cut(s)	418, 961
XceI	RCATGY	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmnI	GAANNNNTTC	2 cut(s)	1215, 1254
XspI	CTAG	4 cut(s)	419, 717, 962, 1220
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.