Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Forward (+)

37630832 .. 37634956

Gene Structure 4125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50590.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCAGCCATTATCTCCTGCCACTCCAAATTCTTAGGATCCAACATACCCTTTAACGTTGGCACTCGCTTCCCTGTTTCCCGCAACCATTCTTCCCCTGCTTCTATTCAATGTCGGGTTCAGAACAACAAACAGAAAGGGAGTTCATTTTCGATAAAGGAGTGTGCGATTTCGATAGCTTTGACTGTAGGGCTAATAACAGGAGTTCCTGCATTGGAATCATATGCAGCTACCCCAGTGCTGCCTGATCTTGCCGTACTGATATCAGGGCCTCCAATAAAGGACCCTGGGGCGTTGTTGAGATATGCTCTGCCTATTAATAACAAGGCTATCAGGGAGGTGCAAAAGCCGCTTGAAGATATCACAGAGAGTCTCAAGATAGCTGGGGCCAAGGCACTAGATTCAACTGAGAGGAATTTGAGGCAGGCCTCTCGAGCACTGAAGCAGGGGAAGGCTTTAATTGTGTCTGGATTAGCTGAATCAAAGAAGGATCATGGTGCTGAATTGCTTGGCAAGTTGGAAGTTGGAATGGATGAGCTCCAACAGATTGTGGAGGATAAAAATAGAGATGGGATTGCTAAGAAACAGAAAGAACTATTACTCTACGTTGGAGGTGTTGAAGAGGACATGGTGGACGGATTCCCTTATGAGATTCCCGAAGAATACCAGAGCATGCCTCTATTGAAGGGGAGAGCAACTGTGGATATGAAGGTCAAGGTTAAGGATAATCCTAACCTTACTGACTGTGTCTTTCGTATCGTCCTCGATGGTTACAATGCTCCTGTAACTTCTGGGAACTTTGTAGACTTGGTGGAAAGACGCTTTTATGATGGCATGGAAATCCAAAGAGCGGACGGATTTGTCGTTCAAACTGGTGATCCTGAAGGACCTGCAGAGGGTTTCATTGACCCAAGCACTGAGAAAATCAGGACCATACCCTTAGAAATCTCTGTGGATGGAGAGAAAGCACCCTTTTACGGAGCAACTTTGGAAGAACTCGGGCTATACAAGGCTCAGACAAAGCTTCCATTTAATGCATTTGGAACAATGGCAATGGCCAGAGATGAATTTGAGAACAATTCTGCTTCAAGCCAGGTATTTTGGTTACTAAAGGAAAGTGAGTTAACTCCCAGTAATGCCAATATATTGGATGGTCGATATGCAGTGTTCGGCTATATTACAGAAAATGAGGACTTTTTGGCAGATCTCAAGGTTGGTGATGTTATTGAGTCTATCCAAGTTGTTTCTGGCCTGGAAAATCTAGTGAATCCAAGCTACAAGATTGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

431

Amino Acids

46.86

Weight (kDa)

4.99

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	96 - 212	1.5e-42	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	252 - 410	6.9e-22	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	860
Acc36I	ACCTGC	1 cut(s)	898
AccBSI	CCGCTC	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	804
AciI	CCGC	3 cut(s)	82, 350, 851
AclI	AACGTT	1 cut(s)	57
AclWI	GGATC	4 cut(s)	33, 46, 498, 872
AcoI	YGGCCR	1 cut(s)	1056
AcsI	RAATTY	3 cut(s)	29, 415, 1067
AcuI	CTGAAG	2 cut(s)	461, 903
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	850, 896, 977
AgsI	TTSAA	7 cut(s)	110, 356, 405, 620, 685, 869, 1089
AjnI	CCWGG	3 cut(s)	286, 1092, 1251
AloI	GAACNNNNNNTCC	2 cut(s)	849, 881
AluBI	AGCT	7 cut(s)	179, 230, 383, 476, 538, 1024, 1275
AluI	AGCT	7 cut(s)	179, 230, 383, 476, 538, 1024, 1275
Alw21I	GWGCWC	2 cut(s)	439, 540
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	4 cut(s)	33, 46, 498, 872
Ama87I	CYCGRG	2 cut(s)	432, 998
AoxI	GGCC	5 cut(s)	269, 387, 426, 1056, 1249
ApeKI	GCWGC	3 cut(s)	5, 227, 241
ApoI	RAATTY	3 cut(s)	29, 415, 1067
AseI	ATTAAT	1 cut(s)	318
AspS9I	GGNCC	5 cut(s)	269, 283, 387, 887, 930
AsuHPI	GGTGA	2 cut(s)	887, 1229
AvaI	CYCGRG	2 cut(s)	432, 998
AvaII	GGWCC	3 cut(s)	283, 887, 930
BalI	TGGCCA	1 cut(s)	1058
BamHI	GGATCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	439, 540
BbvI	GCAGC	3 cut(s)	17, 228, 239
BccI	CCATC	5 cut(s)	563, 761, 824, 950, 1145
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	3 cut(s)	288, 1094, 1253
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	3 cut(s)	398, 1262, 1291
BfmI	CTRYAG	2 cut(s)	186, 891
BfuAI	ACCTGC	1 cut(s)	898
BglII	AGATCT	1 cut(s)	1204
BisI	GCNGC	4 cut(s)	6, 228, 242, 350
BlsI	GCNGC	4 cut(s)	7, 229, 243, 351
Bme1390I	CCNGG	3 cut(s)	288, 1094, 1253
Bme18I	GGWCC	3 cut(s)	283, 887, 930
BmeT110I	CYCGRG	2 cut(s)	432, 998
BmgT120I	GGNCC	5 cut(s)	269, 283, 387, 887, 930
BmiI	GGNNCC	3 cut(s)	40, 285, 388
BmrFI	CCNGG	3 cut(s)	288, 1094, 1253
BmrI	ACTGGG	2 cut(s)	230, 1125
BmuI	ACTGGG	2 cut(s)	230, 1125
BplI	GAGNNNNNCTC	4 cut(s)	292, 324, 661, 693
BpuEI	CTTGAG	2 cut(s)	359, 1193
BsaJI	CCNNGG	3 cut(s)	286, 287, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	850, 896, 977
Bse1I	ACTGG	3 cut(s)	236, 877, 1131
Bse3DI	GCAATG	1 cut(s)	1059
BseBI	CCWGG	3 cut(s)	288, 1094, 1253
BseDI	CCNNGG	3 cut(s)	286, 287, 390
BseGI	GGATG	3 cut(s)	538, 961, 1156
BseLI	CCNNNNNNNGG	3 cut(s)	850, 896, 977
BseMI	GCAATG	1 cut(s)	1059
BseMII	CTCAG	3 cut(s)	399, 909, 1028
BseNI	ACTGG	3 cut(s)	236, 877, 1131
BseXI	GCAGC	3 cut(s)	17, 228, 239
BseYI	CCCAGC	1 cut(s)	383
BshFI	GGCC	5 cut(s)	271, 389, 428, 1058, 1251
BsiHKAI	GWGCWC	2 cut(s)	439, 540
BsiHKCI	CYCGRG	2 cut(s)	432, 998
BslI	CCNNNNNNNGG	3 cut(s)	850, 896, 977
BsmAI	GTCTC	1 cut(s)	377
BsnI	GGCC	5 cut(s)	271, 389, 428, 1058, 1251
BsoBI	CYCGRG	2 cut(s)	432, 998
Bsp1286I	GDGCHC	2 cut(s)	439, 540
Bsp143I	GATC	5 cut(s)	38, 247, 490, 877, 1204
BspACI	CCGC	3 cut(s)	82, 350, 851
BspANI	GGCC	5 cut(s)	271, 389, 428, 1058, 1251
BspCNI	CTCAG	3 cut(s)	400, 910, 1027
BspLI	GGNNCC	3 cut(s)	40, 285, 388
BspMAI	CTGCAG	1 cut(s)	895
BspMI	ACCTGC	1 cut(s)	898
BspPI	GGATC	4 cut(s)	33, 46, 498, 872
BsrBI	CCGCTC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	1059
BsrI	ACTGG	3 cut(s)	236, 877, 1131
BssECI	CCNNGG	3 cut(s)	286, 287, 390
BssMI	GATC	5 cut(s)	38, 247, 490, 877, 1204
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	3 cut(s)	288, 1094, 1253
Bst4CI	ACNGT	3 cut(s)	187, 700, 746
Bst6I	CTCTTC	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	426, 674, 1288
BstDEI	CTNAG	6 cut(s)	34, 408, 579, 918, 940, 1014
BstF5I	GGATG	3 cut(s)	538, 961, 1156
BstKTI	GATC	5 cut(s)	41, 250, 493, 880, 1207
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	5 cut(s)	38, 247, 490, 877, 1204
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 434
BstNI	CCWGG	3 cut(s)	288, 1094, 1253
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	3 cut(s)	286, 1092, 1251
BstSFI	CTRYAG	2 cut(s)	186, 891
BstV1I	GCAGC	3 cut(s)	17, 228, 239
BstX2I	RGATCY	2 cut(s)	38, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	1147
BstYI	RGATCY	2 cut(s)	38, 1204
BsuRI	GGCC	5 cut(s)	271, 389, 428, 1058, 1251
BtsCI	GGATG	3 cut(s)	538, 961, 1156
BtsI	GCAGTG	1 cut(s)	1170
BtsIMutI	CAGTG	4 cut(s)	243, 437, 915, 1170
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	3 cut(s)	426, 674, 1288
Cfr13I	GGNCC	5 cut(s)	269, 283, 387, 887, 930
CseI	GACGC	1 cut(s)	828
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	4 cut(s)	494, 628, 673, 835
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	6 cut(s)	34, 408, 579, 918, 940, 1014
DpnI	GATC	5 cut(s)	40, 249, 492, 879, 1206
DpnII	GATC	5 cut(s)	38, 247, 490, 877, 1204
DrdI	GACNNNNNNGTC	1 cut(s)	860
DseDI	GACNNNNNNGTC	1 cut(s)	860
EaeI	YGGCCR	1 cut(s)	1056
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	540
Eco32I	GATATC	2 cut(s)	264, 361
Eco47I	GGWCC	3 cut(s)	283, 887, 930
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	461, 903
Eco88I	CYCGRG	2 cut(s)	432, 998
EcoICRI	GAGCTC	1 cut(s)	538
EcoO109I	RGGNCCY	3 cut(s)	269, 283, 887
EcoRII	CCWGG	3 cut(s)	286, 1092, 1251
EcoRV	GATATC	2 cut(s)	264, 361
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	4 cut(s)	497, 631, 676, 838
FatI	CATG	4 cut(s)	493, 627, 672, 834
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	804
Fnu4HI	GCNGC	4 cut(s)	6, 228, 242, 350
FokI	GGATG	3 cut(s)	545, 968, 1163
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	4 cut(s)	6, 228, 242, 350
FspBI	CTAG	3 cut(s)	398, 1262, 1291
GluI	GCNGC	4 cut(s)	6, 228, 242, 350
GsaI	CCCAGC	1 cut(s)	387
HaeIII	GGCC	5 cut(s)	271, 389, 428, 1058, 1251
HgaI	GACGC	1 cut(s)	828
Hin1II	CATG	4 cut(s)	497, 631, 676, 838
HincII	GTYRAC	1 cut(s)	1125
HindII	GTYRAC	1 cut(s)	1125
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	8 cut(s)	218, 370, 401, 479, 639, 652, 1229, 1267
HpaI	GTTAAC	1 cut(s)	1125
HphI	GGTGA	2 cut(s)	887, 1229
Hpy166II	GTNNAC	3 cut(s)	634, 805, 1125
Hpy188I	TCNGA	2 cut(s)	123, 1017
Hpy188III	TCNNGA	6 cut(s)	376, 432, 468, 656, 881, 928
Hpy8I	GTNNAC	3 cut(s)	634, 805, 1125
HpyAV	CCTTC	5 cut(s)	445, 481, 679, 703, 878
HpyCH4III	ACNGT	3 cut(s)	187, 700, 746
HpyCH4IV	ACGT	2 cut(s)	57, 606
HpyCH4V	TGCA	6 cut(s)	212, 227, 343, 893, 1037, 1163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 434
HpyF3I	CTNAG	6 cut(s)	34, 408, 579, 918, 940, 1014
HpySE526I	ACGT	2 cut(s)	57, 606
Hsp92II	CATG	4 cut(s)	497, 631, 676, 838
KspAI	GTTAAC	1 cut(s)	1125
Kzo9I	GATC	5 cut(s)	38, 247, 490, 877, 1204
LmnI	GCTCC	3 cut(s)	543, 784, 980
Lsp1109I	GCAGC	3 cut(s)	17, 228, 239
MaeI	CTAG	3 cut(s)	398, 1262, 1291
MaeII	ACGT	2 cut(s)	57, 606
MaeIII	GTNAC	3 cut(s)	770, 784, 1104
MalI	GATC	5 cut(s)	40, 249, 492, 879, 1206
MbiI	CCGCTC	1 cut(s)	851
MboI	GATC	5 cut(s)	38, 247, 490, 877, 1204
MboII	GAAGA	5 cut(s)	84, 368, 632, 671, 1004
MflI	RGATCY	2 cut(s)	38, 1204
MhlI	GDGCHC	2 cut(s)	439, 540
MlsI	TGGCCA	1 cut(s)	1058
MluCI	AATT	6 cut(s)	29, 415, 459, 503, 1067, 1078
MluNI	TGGCCA	1 cut(s)	1058
MlyI	GAGTC	2 cut(s)	379, 1238
MmeI	TCCRAC	5 cut(s)	66, 498, 505, 565, 589
Mox20I	TGGCCA	1 cut(s)	1058
Mph1103I	ATGCAT	1 cut(s)	1039
MscI	TGGCCA	1 cut(s)	1058
MseI	TTAA	6 cut(s)	54, 318, 458, 720, 1032, 1124
Msp20I	TGGCCA	1 cut(s)	1058
MspR9I	CCNGG	3 cut(s)	288, 1094, 1253
MvaI	CCWGG	3 cut(s)	288, 1094, 1253
MwoI	GCNNNNNNNGC	2 cut(s)	349, 434
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	5 cut(s)	38, 247, 490, 877, 1204
NlaIII	CATG	4 cut(s)	497, 631, 676, 838
NlaIV	GGNNCC	3 cut(s)	40, 285, 388
NsiI	ATGCAT	1 cut(s)	1039
NspI	RCATGY	1 cut(s)	676
PaeI	GCATGC	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	432
PasI	CCCWGGG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PfeI	GAWTC	6 cut(s)	218, 401, 479, 639, 652, 1267
PflFI	GACNNNGTC	1 cut(s)	746
PkrI	GCNGC	4 cut(s)	7, 229, 243, 351
PleI	GAGTC	2 cut(s)	378, 1237
PpsI	GAGTC	2 cut(s)	378, 1237
PpuMI	RGGWCCY	2 cut(s)	283, 887
PshBI	ATTAAT	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	540
Psp1406I	AACGTT	1 cut(s)	57
Psp5II	RGGWCCY	2 cut(s)	283, 887
Psp6I	CCWGG	3 cut(s)	286, 1092, 1251
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	3 cut(s)	286, 1092, 1251
PspN4I	GGNNCC	3 cut(s)	40, 285, 388
PspPI	GGNCC	5 cut(s)	269, 283, 387, 887, 930
PspPPI	RGGWCCY	2 cut(s)	283, 887
PstI	CTGCAG	1 cut(s)	895
PsuI	RGATCY	2 cut(s)	38, 1204
PsyI	GACNNNGTC	1 cut(s)	746
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	540
SaqAI	TTAA	6 cut(s)	54, 318, 458, 720, 1032, 1124
SatI	GCNGC	4 cut(s)	6, 228, 242, 350
Sau3AI	GATC	5 cut(s)	38, 247, 490, 877, 1204
Sau96I	GGNCC	5 cut(s)	269, 283, 387, 887, 930
SchI	GAGTC	2 cut(s)	379, 1238
ScrFI	CCNGG	3 cut(s)	288, 1094, 1253
SduI	GDGCHC	2 cut(s)	439, 540
SfcI	CTRYAG	2 cut(s)	186, 891
Sfr274I	CTCGAG	1 cut(s)	432
SinI	GGWCC	3 cut(s)	283, 887, 930
SlaI	CTCGAG	1 cut(s)	432
SmlI	CTYRAG	3 cut(s)	374, 432, 1208
SmoI	CTYRAG	3 cut(s)	374, 432, 1208
SphI	GCATGC	1 cut(s)	676
Sse9I	AATT	6 cut(s)	29, 415, 459, 503, 1067, 1078
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	3 cut(s)	82, 350, 851
SspMI	CTAG	3 cut(s)	398, 1262, 1291
SstI	GAGCTC	1 cut(s)	540
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	3 cut(s)	286, 1092, 1251
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	3 cut(s)	187, 700, 746
TaiI	ACGT	2 cut(s)	60, 609
TaqI	TCGA	5 cut(s)	152, 173, 433, 765, 1156
TasI	AATT	6 cut(s)	29, 415, 459, 503, 1067, 1078
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	6 cut(s)	218, 401, 479, 639, 652, 1267
Tru1I	TTAA	6 cut(s)	54, 318, 458, 720, 1032, 1124
Tru9I	TTAA	6 cut(s)	54, 318, 458, 720, 1032, 1124
TscAI	CASTG	4 cut(s)	243, 444, 922, 1170
TseI	GCWGC	3 cut(s)	5, 227, 241
TspDTI	ATGAA	4 cut(s)	135, 722, 892, 1080
TspGWI	ACGGA	3 cut(s)	651, 870, 993
TspRI	CASTG	4 cut(s)	243, 444, 922, 1170
Tth111I	GACNNNGTC	1 cut(s)	746
VpaK11BI	GGWCC	3 cut(s)	283, 887, 930
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	3 cut(s)	29, 415, 1067
XceI	RCATGY	1 cut(s)	676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1244
XhoI	CTCGAG	1 cut(s)	432
XmiI	GTMKAC	1 cut(s)	804
XspI	CTAG	3 cut(s)	398, 1262, 1291
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.