Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Forward (+)

85868009 .. 85871300

Gene Structure 3292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG638400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCAGCCATTATCTCCTGCCACTCCAAATTCTTAGGACCCAGCATACCCTTTAATGTTGGCACTCGCTTCCCAGTTTCCCGCAACCATTCTTCCCCAACTTCTATTCAATGTCGGATCCAGAACAACAAACAGCAGAAAGGGAGTTCTTTTTCAGTAAAGGAGTGTGCCATTTCAATAGCTTTGACGGTGGGGCTAATAACAGGAGTTCCTGCATTGGAATTGTCCAACAATGCTTATGCAGCTACCCCAGTACTGCCTGATCTGGCTGTACTGATCTCTGGACCGCCAATAAAGGACCCTGGGGCATTGTTGAGATATGCTCTGCCTATTGATAACAAGGCTATCAGGGAGGTACAAAAGCCGCTTGAAGATATCACAGAGAGTCTCAAGATAGCTGGAGTCAAGGCACTAGATTCAACTGAGAGGAATTTGAGGCAGGCGTCTCGAGCACTGAAGCAGGGGAAGCCTTTAATTGTATCTGGATTAGCTGAGTCGAAGAAGGATCATGGTGCTGAATTGCTTGGCAAGCTGGAAGTAGGAATGGATGAGCTCCAACAGATTGTGGAGGATAAAAATAGAGATGGCATTGCTAAGAAACAGAAAGAACTAGTACTCTATGTCGGAGGTGTTGAAGAGGACATGGTGGATGGATTCCCTTATGAAGTGCCCGAAGAATACCAAAGCATGCCTCTATTGAAGGGGAGAGCAACTGTGGATATGAAGGTCAAGGTTAAGGATAATCCTAACCTTACTGACTGTGTCTTTCGTATTGTCCTCGATGGTTACAATGCTCCTGTAACTTCTGGAAACTTTGTGGACTTGGTGGAAAGACACTTTTATGATGGCATGGAAATCCAAAGAGCGGACGGATTTGTTGTACAAACTGGTGATCCTGAAGGACCTGCAGAGGGTTTCATTGATCCAAGTACTGAGAAGACCAGGACAATACCTTTAGAAATCTCTGTAGTTGGAGAGAAAGCACCCTTTTATGGAGCAACTTTGGAAGTAAGATTCCTCCTCCCTTGTCACTCCCTCTCTCCCTTTGTATGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

352

Amino Acids

38.3

Weight (kDa)

5.56

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	100 - 216	4.8e-42	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	256 - 321	3.8e-10	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	913
AccBSI	CCGCTC	1 cut(s)	866
AciI	CCGC	4 cut(s)	82, 287, 365, 866
AclWI	GGATC	5 cut(s)	112, 125, 513, 887, 917
AcsI	RAATTY	2 cut(s)	29, 430
AcuI	CTGAAG	2 cut(s)	476, 918
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	6 cut(s)	255, 273, 357, 615, 882, 931
AfiI	CCNNNNNNNGG	3 cut(s)	865, 911, 992
AgsI	TTSAA	6 cut(s)	110, 177, 371, 420, 635, 700
AhlI	ACTAGT	1 cut(s)	610
AjnI	CCWGG	2 cut(s)	301, 941
AluBI	AGCT	6 cut(s)	182, 245, 398, 491, 532, 553
AluI	AGCT	6 cut(s)	182, 245, 398, 491, 532, 553
Alw21I	GWGCWC	2 cut(s)	454, 555
Alw26I	GTCTC	2 cut(s)	392, 450
AlwI	GGATC	5 cut(s)	112, 125, 513, 887, 917
Ama87I	CYCGRG	1 cut(s)	447
ApeKI	GCWGC	2 cut(s)	5, 242
ApoI	RAATTY	2 cut(s)	29, 430
AspS9I	GGNCC	4 cut(s)	38, 284, 298, 902
AsuHPI	GGTGA	1 cut(s)	902
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	4 cut(s)	38, 284, 298, 902
BaeGI	GKGCMC	1 cut(s)	672
BamHI	GGATCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	2 cut(s)	454, 555
BbvI	GCAGC	2 cut(s)	17, 254
BccI	CCATC	4 cut(s)	578, 644, 776, 839
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	2 cut(s)	303, 943
BcoDI	GTCTC	2 cut(s)	392, 450
BcuI	ACTAGT	1 cut(s)	610
BfaI	CTAG	2 cut(s)	413, 611
BfmI	CTRYAG	2 cut(s)	906, 966
BfuAI	ACCTGC	1 cut(s)	913
BisI	GCNGC	3 cut(s)	6, 243, 365
BlsI	GCNGC	3 cut(s)	7, 244, 366
BmcAI	AGTACT	3 cut(s)	255, 615, 931
Bme1390I	CCNGG	2 cut(s)	303, 943
Bme18I	GGWCC	4 cut(s)	38, 284, 298, 902
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	4 cut(s)	38, 284, 298, 902
BmiI	GGNNCC	3 cut(s)	40, 119, 300
BmrFI	CCNGG	2 cut(s)	303, 943
BmrI	ACTGGG	2 cut(s)	68, 245
BmuI	ACTGGG	2 cut(s)	68, 245
BpiI	GAAGAC	1 cut(s)	944
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	301, 302
Bsc4I	CCNNNNNNNGG	3 cut(s)	865, 911, 992
Bse1I	ACTGG	3 cut(s)	74, 251, 892
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	303, 943
BseDI	CCNNGG	2 cut(s)	301, 302
BseGI	GGATG	2 cut(s)	553, 655
BseLI	CCNNNNNNNGG	3 cut(s)	865, 911, 992
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	414, 483, 924
BseNI	ACTGG	3 cut(s)	74, 251, 892
BseRI	GAGGAG	1 cut(s)	1010
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	2 cut(s)	17, 254
BseYI	CCCAGC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	454, 555
BsiHKCI	CYCGRG	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	865, 911, 992
BsmAI	GTCTC	2 cut(s)	392, 450
BsmBI	CGTCTC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	3 cut(s)	454, 555, 672
Bsp1407I	TGTACA	1 cut(s)	880
Bsp143I	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
BspACI	CCGC	4 cut(s)	82, 287, 365, 866
BspCNI	CTCAG	3 cut(s)	415, 484, 925
BspLI	GGNNCC	3 cut(s)	40, 119, 300
BspMAI	CTGCAG	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	913
BspPI	GGATC	5 cut(s)	112, 125, 513, 887, 917
BsrBI	CCGCTC	1 cut(s)	866
BsrDI	GCAATG	1 cut(s)	588
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	3 cut(s)	74, 251, 892
BssECI	CCNNGG	2 cut(s)	301, 302
BssMI	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
BssNI	GRCGYC	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	303, 943
Bst4CI	ACNGT	3 cut(s)	190, 715, 761
Bst6I	CTCTTC	1 cut(s)	630
BstACI	GRCGYC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	880
BstC8I	GCNNGC	3 cut(s)	441, 530, 689
BstDEI	CTNAG	5 cut(s)	34, 423, 492, 594, 933
BstF5I	GGATG	2 cut(s)	553, 655
BstKTI	GATC	6 cut(s)	120, 265, 279, 508, 895, 925
BstMAI	GTCTC	2 cut(s)	392, 450
BstMBI	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 449, 466, 529
BstNI	CCWGG	2 cut(s)	303, 943
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	2 cut(s)	301, 941
BstSFI	CTRYAG	2 cut(s)	906, 966
BstSLI	GKGCMC	1 cut(s)	672
BstV1I	GCAGC	2 cut(s)	17, 254
BstV2I	GAAGAC	1 cut(s)	944
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	553, 655
BtsIMutI	CAGTG	1 cut(s)	452
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	3 cut(s)	441, 530, 689
Cfr13I	GGNCC	4 cut(s)	38, 284, 298, 902
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	6 cut(s)	254, 272, 356, 614, 881, 930
CviAII	CATG	4 cut(s)	509, 643, 688, 850
CviQI	GTAC	6 cut(s)	254, 272, 356, 614, 881, 930
DdeI	CTNAG	5 cut(s)	34, 423, 492, 594, 933
DpnI	GATC	6 cut(s)	119, 264, 278, 507, 894, 924
DpnII	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	4 cut(s)	38, 284, 298, 902
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	476, 918
Eco88I	CYCGRG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	553
EcoO109I	RGGNCCY	3 cut(s)	38, 298, 902
EcoRII	CCWGG	2 cut(s)	301, 941
EcoRV	GATATC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	4 cut(s)	512, 646, 691, 853
FatI	CATG	4 cut(s)	508, 642, 687, 849
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	6, 243, 365
FokI	GGATG	2 cut(s)	560, 662
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	3 cut(s)	6, 243, 365
FspBI	CTAG	2 cut(s)	413, 611
GluI	GCNGC	3 cut(s)	6, 243, 365
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	420
HgaI	GACGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	4 cut(s)	512, 646, 691, 853
HinfI	GANTC	6 cut(s)	385, 402, 416, 494, 654, 1014
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	2 cut(s)	117, 626
Hpy188III	TCNNGA	7 cut(s)	121, 282, 391, 447, 483, 807, 896
Hpy8I	GTNNAC	1 cut(s)	820
HpyAV	CCTTC	4 cut(s)	496, 694, 718, 893
HpyCH4III	ACNGT	3 cut(s)	190, 715, 761
HpyCH4V	TGCA	3 cut(s)	215, 242, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 449, 466, 529
HpyF3I	CTNAG	5 cut(s)	34, 423, 492, 594, 933
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	4 cut(s)	512, 646, 691, 853
Kzo9I	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
LmnI	GCTCC	3 cut(s)	558, 799, 995
Lsp1109I	GCAGC	2 cut(s)	17, 254
MaeI	CTAG	2 cut(s)	413, 611
MaeIII	GTNAC	3 cut(s)	785, 799, 1028
MalI	GATC	6 cut(s)	119, 264, 278, 507, 894, 924
MbiI	CCGCTC	1 cut(s)	866
MboI	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
MboII	GAAGA	6 cut(s)	84, 383, 511, 647, 686, 949
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	3 cut(s)	454, 555, 672
MluCI	AATT	5 cut(s)	29, 221, 430, 474, 518
MlyI	GAGTC	3 cut(s)	394, 411, 503
MmeI	TCCRAC	5 cut(s)	95, 252, 580, 604, 952
MseI	TTAA	3 cut(s)	54, 473, 735
MslI	CAYNNNNRTG	1 cut(s)	840
MspR9I	CCNGG	2 cut(s)	303, 943
MvaI	CCWGG	2 cut(s)	303, 943
MwoI	GCNNNNNNNGC	4 cut(s)	242, 449, 466, 529
NdeII	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
NlaIII	CATG	4 cut(s)	512, 646, 691, 853
NlaIV	GGNNCC	3 cut(s)	40, 119, 300
NmuCI	GTSAC	1 cut(s)	1028
NspI	RCATGY	1 cut(s)	691
PaeI	GCATGC	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	447
PasI	CCCWGGG	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	416, 654, 1014
PflFI	GACNNNGTC	1 cut(s)	761
PkrI	GCNGC	3 cut(s)	7, 244, 366
PleI	GAGTC	3 cut(s)	393, 410, 502
PpsI	GAGTC	3 cut(s)	393, 410, 502
PpuMI	RGGWCCY	3 cut(s)	38, 298, 902
Psp124BI	GAGCTC	1 cut(s)	555
Psp5II	RGGWCCY	3 cut(s)	38, 298, 902
Psp6I	CCWGG	2 cut(s)	301, 941
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	301, 941
PspN4I	GGNNCC	3 cut(s)	40, 119, 300
PspPI	GGNCC	4 cut(s)	38, 284, 298, 902
PspPPI	RGGWCCY	3 cut(s)	38, 298, 902
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	761
RsaI	GTAC	6 cut(s)	255, 273, 357, 615, 882, 931
RsaNI	GTAC	6 cut(s)	254, 272, 356, 614, 881, 930
RseI	CAYNNNNRTG	1 cut(s)	840
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	54, 473, 735
SatI	GCNGC	3 cut(s)	6, 243, 365
Sau3AI	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
Sau96I	GGNCC	4 cut(s)	38, 284, 298, 902
ScaI	AGTACT	3 cut(s)	255, 615, 931
SchI	GAGTC	3 cut(s)	394, 411, 503
ScrFI	CCNGG	2 cut(s)	303, 943
SduI	GDGCHC	3 cut(s)	454, 555, 672
SfcI	CTRYAG	2 cut(s)	906, 966
Sfr274I	CTCGAG	1 cut(s)	447
SinI	GGWCC	4 cut(s)	38, 284, 298, 902
SlaI	CTCGAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	2 cut(s)	389, 447
SmoI	CTYRAG	2 cut(s)	389, 447
SpeI	ACTAGT	1 cut(s)	610
SphI	GCATGC	1 cut(s)	691
Sse9I	AATT	5 cut(s)	29, 221, 430, 474, 518
SsiI	CCGC	4 cut(s)	82, 287, 365, 866
SspMI	CTAG	2 cut(s)	413, 611
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	301, 941
TaaI	ACNGT	3 cut(s)	190, 715, 761
TaqI	TCGA	3 cut(s)	448, 497, 780
TasI	AATT	5 cut(s)	29, 221, 430, 474, 518
TatI	WGTACW	5 cut(s)	253, 271, 613, 880, 929
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	3 cut(s)	416, 654, 1014
Tru1I	TTAA	3 cut(s)	54, 473, 735
Tru9I	TTAA	3 cut(s)	54, 473, 735
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	1028
TseI	GCWGC	2 cut(s)	5, 242
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	3 cut(s)	678, 737, 907
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	1 cut(s)	459
Tth111I	GACNNNGTC	1 cut(s)	761
VpaK11BI	GGWCC	4 cut(s)	38, 284, 298, 902
XapI	RAATTY	2 cut(s)	29, 430
XceI	RCATGY	1 cut(s)	691
XhoI	CTCGAG	1 cut(s)	447
XspI	CTAG	2 cut(s)	413, 611
ZrmI	AGTACT	3 cut(s)	255, 615, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.