Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Reverse (-)

1661882 .. 1664382

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02790.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCAGCCCTCCTCTCCTGCCACTACTCTGCTGCTTCTCCAGCTTCCTCCTCCAAATTCTTCAGCGGCCACCGCACTCCCTTCTCAATTCCCCACAACCACCTTGCAACCCGCCGTTCTTCCCCACGCCCTGTCCAATGCCAGATCCACAACCAACAGCAGAAGGGGATGTCATTCTCCATCAAGGAGTGCGCGATTTCGATAGCATTGGCGGTGGGATTAGTAACAGGAGTTCCTGCATTGGATTGGACTAGCAATGCCTTTGCCGCGGCTAATCCAGCGGTGCCTGATGTGTCTGTACTGATCTCTGGACCGCCGATAAAGGACCCGGGGGCATTGCTGAGATACGCTCTGCCTATTGATAATAAAGCTATCAGGGAAGTACAGAAACCGCTTGAAGATATTACTGAGAGTCTCAAGGTAGCTGGGGTCAGAGCACTCGATTCCGTTGAGAGGAATTTGAGGCAGGCATCTCGAGCGCTGACGCAGGGGAAGTCTTTAATTGTATCTGGATTAGCTGAATCGAAGAAGGAACACGGAGTTGAATTGCTTGCCAAGCTCGAAGCTGGAATGAGTGAGCTTCAACAGATTGTGGAGGATAGAGATAGAGATGCAGTAGCAGCAAAACAGAAGGAGCTGCTTCAGTATGTCGGGGGTGTTGAAGAGGATATGGTGGACGGATTCCCTTACGAAGTGCCTGAAGAATACCAAAGCATGCCTCTGTTGAAGGGGAGAGCGACGGTGGATATGAAGGTCAAGGTTAAGGACAATCCCAGCCTTACTGATTGTGTCTTTCGTATTGTTCTTGATGGTTACAACGCCCCTGTTACTGCCGGGAACTTTGTAGACTTGGTGGAACGACACTTCTACGATGGCATGGAAATCCAAAGAGCGGATGGTTTTGTCGTACAAACTGGTGATCCTGAAGGACCTGCAGAGGGTTTCATCGATCCAAGTACAGAGAAAACCAGGACAATACCATTAGAAATCATGGTCGAGGGAGAGAAAGTACCTTTTTATGGAGCAACTTTGGAAGAATTTGATGACAATTCTGCTTCCAGCCAAGTGTTCTGGCTGCTCAAGGAAAGTGAGCTAACTCCAAGCAATTCCAATATATTGGATGGGAGGTATGCAGTGTTTGGATATGTAACGGAGAACGAGGACTTGTTGGCAGATTTGAAAGTTGGTGATGTTATTGAATCAATCCAAGTAGTTTCTGGCCTGGAAAATCTTGCCAATCCAAGCTACAAGATTGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

421

Amino Acids

45.67

Weight (kDa)

4.87

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	940
AccB1I	GGYRCC	1 cut(s)	283
AccBSI	CCGCTC	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	2 cut(s)	194, 269
AclWI	GGATC	3 cut(s)	139, 914, 944
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	3 cut(s)	56, 457, 1037
AcuI	CTGAAG	4 cut(s)	46, 626, 720, 945
AfaI	GTAC	5 cut(s)	300, 384, 909, 958, 1011
AfeI	AGCGCT	1 cut(s)	480
AfiI	CCNNNNNNNGG	4 cut(s)	453, 892, 938, 1019
AgsI	TTSAA	7 cut(s)	398, 545, 584, 662, 727, 1180, 1199
AjnI	CCWGG	2 cut(s)	968, 1221
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	3 cut(s)	139, 914, 944
Ama87I	CYCGRG	2 cut(s)	328, 474
Aor51HI	AGCGCT	1 cut(s)	480
AoxI	GGCC	2 cut(s)	67, 1219
ApeKI	GCWGC	5 cut(s)	5, 32, 620, 637, 1075
ApoI	RAATTY	3 cut(s)	56, 457, 1037
AspLEI	GCGC	2 cut(s)	194, 481
AspS9I	GGNCC	3 cut(s)	311, 325, 929
AsuC2I	CCSGG	3 cut(s)	329, 330, 835
AsuHPI	GGTGA	2 cut(s)	929, 1199
AvaI	CYCGRG	2 cut(s)	328, 474
AvaII	GGWCC	3 cut(s)	311, 325, 929
BanI	GGYRCC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	5 cut(s)	17, 19, 624, 632, 1062
BccI	CCATC	5 cut(s)	188, 803, 866, 890, 1115
BceAI	ACGGC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	2 cut(s)	970, 1223
BcnI	CCSGG	3 cut(s)	329, 330, 835
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	2 cut(s)	252, 1261
BfmI	CTRYAG	1 cut(s)	933
BfoI	RGCGCY	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	940
BisI	GCNGC	8 cut(s)	6, 33, 67, 267, 270, 621, 638, 1076
BlsI	GCNGC	8 cut(s)	7, 34, 68, 268, 271, 622, 639, 1077
Bme1390I	CCNGG	5 cut(s)	329, 330, 835, 970, 1223
Bme18I	GGWCC	3 cut(s)	311, 325, 929
BmeT110I	CYCGRG	2 cut(s)	328, 474
BmgT120I	GGNCC	3 cut(s)	311, 325, 929
BmiI	GGNNCC	2 cut(s)	285, 327
BmrFI	CCNGG	5 cut(s)	329, 330, 835, 970, 1223
BmsI	GCATC	2 cut(s)	479, 601
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
BpmI	CTGGAG	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	401, 1064
BpuMI	CCSGG	3 cut(s)	329, 330, 835
Bsa29I	ATCGAT	1 cut(s)	948
BsaJI	CCNNGG	3 cut(s)	267, 328, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	993, 1023
Bsc4I	CCNNNNNNNGG	4 cut(s)	453, 892, 938, 1019
Bse1I	ACTGG	1 cut(s)	919
Bse3DI	GCAATG	2 cut(s)	262, 335
BseBI	CCWGG	2 cut(s)	970, 1223
BseCI	ATCGAT	1 cut(s)	948
BseDI	CCNNGG	3 cut(s)	267, 328, 329
BseGI	GGATG	3 cut(s)	174, 901, 1126
BseLI	CCNNNNNNNGG	4 cut(s)	453, 892, 938, 1019
BseMI	GCAATG	2 cut(s)	262, 335
BseMII	CTCAG	2 cut(s)	332, 399
BseNI	ACTGG	1 cut(s)	919
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	5 cut(s)	17, 19, 624, 632, 1062
BseYI	CCCAGC	2 cut(s)	425, 773
Bsh1236I	CGCG	2 cut(s)	194, 269
BshFI	GGCC	2 cut(s)	69, 1221
BshNI	GGYRCC	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	948
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	2 cut(s)	328, 474
BsiSI	CCGG	2 cut(s)	329, 834
BslI	CCNNNNNNNGG	4 cut(s)	453, 892, 938, 1019
BsmAI	GTCTC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	69, 1221
BsoBI	CYCGRG	2 cut(s)	328, 474
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	4 cut(s)	144, 303, 919, 949
BspANI	GGCC	2 cut(s)	69, 1221
BspCNI	CTCAG	2 cut(s)	333, 400
BspDI	ATCGAT	1 cut(s)	948
BspFNI	CGCG	2 cut(s)	194, 269
BspLI	GGNNCC	2 cut(s)	285, 327
BspMAI	CTGCAG	1 cut(s)	937
BspMI	ACCTGC	1 cut(s)	940
BspPI	GGATC	3 cut(s)	139, 914, 944
BspT107I	GGYRCC	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	893
BsrDI	GCAATG	2 cut(s)	262, 335
BsrI	ACTGG	1 cut(s)	919
BssECI	CCNNGG	3 cut(s)	267, 328, 329
BssMI	GATC	4 cut(s)	144, 303, 919, 949
Bst2UI	CCWGG	2 cut(s)	970, 1223
Bst4CI	ACNGT	1 cut(s)	742
Bst6I	CTCTTC	1 cut(s)	657
BstC8I	GCNNGC	4 cut(s)	468, 552, 716, 1258
BstDEI	CTNAG	2 cut(s)	341, 408
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	174, 901, 1126
BstFNI	CGCG	2 cut(s)	194, 269
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	194, 481
BstKTI	GATC	4 cut(s)	147, 306, 922, 952
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	4 cut(s)	144, 303, 919, 949
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 72, 266, 278, 476, 556, 620
BstNI	CCWGG	2 cut(s)	970, 1223
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	5 cut(s)	327, 328, 833, 968, 1221
BstSFI	CTRYAG	1 cut(s)	933
BstUI	CGCG	2 cut(s)	194, 269
BstV1I	GCAGC	5 cut(s)	17, 19, 624, 632, 1062
BstX2I	RGATCY	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	1117
BstYI	RGATCY	1 cut(s)	144
Bsu15I	ATCGAT	1 cut(s)	948
BsuRI	GGCC	2 cut(s)	69, 1221
BsuTUI	ATCGAT	1 cut(s)	948
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	174, 901, 1126
BtsI	GCAGTG	1 cut(s)	1140
BtsIMutI	CAGTG	1 cut(s)	1140
BveI	ACCTGC	1 cut(s)	940
Cac8I	GCNNGC	4 cut(s)	468, 552, 716, 1258
CfoI	GCGC	2 cut(s)	194, 481
Cfr13I	GGNCC	3 cut(s)	311, 325, 929
Cfr42I	CCGCGG	1 cut(s)	270
Cfr9I	CCCGGG	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	948
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	5 cut(s)	299, 383, 908, 957, 1010
CviAII	CATG	3 cut(s)	715, 877, 991
CviQI	GTAC	5 cut(s)	299, 383, 908, 957, 1010
DdeI	CTNAG	2 cut(s)	341, 408
DpnI	GATC	4 cut(s)	146, 305, 921, 951
DpnII	GATC	4 cut(s)	144, 303, 919, 949
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco47I	GGWCC	3 cut(s)	311, 325, 929
Eco47III	AGCGCT	1 cut(s)	480
Eco57I	CTGAAG	4 cut(s)	46, 626, 720, 945
Eco88I	CYCGRG	2 cut(s)	328, 474
EcoO109I	RGGNCCY	2 cut(s)	325, 929
EcoRII	CCWGG	2 cut(s)	968, 1221
FaeI	CATG	3 cut(s)	718, 880, 994
FatI	CATG	3 cut(s)	714, 876, 990
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	8 cut(s)	6, 33, 67, 267, 270, 621, 638, 1076
FokI	GGATG	3 cut(s)	181, 908, 1133
Fsp4HI	GCNGC	8 cut(s)	6, 33, 67, 267, 270, 621, 638, 1076
FspBI	CTAG	2 cut(s)	252, 1261
GlaI	GCGC	2 cut(s)	193, 480
GluI	GCNGC	8 cut(s)	6, 33, 67, 267, 270, 621, 638, 1076
GsaI	CCCAGC	2 cut(s)	429, 777
GsuI	CTGGAG	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	69, 1221
HapII	CCGG	2 cut(s)	329, 834
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	2 cut(s)	194, 481
Hin1II	CATG	3 cut(s)	718, 880, 994
Hin6I	GCGC	2 cut(s)	192, 479
HinP1I	GCGC	2 cut(s)	192, 479
HinfI	GANTC	5 cut(s)	412, 443, 521, 681, 1199
HpaII	CCGG	2 cut(s)	329, 834
HphI	GGTGA	2 cut(s)	929, 1199
Hpy166II	GTNNAC	2 cut(s)	676, 847
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	5 cut(s)	309, 474, 510, 806, 923
Hpy8I	GTNNAC	2 cut(s)	676, 847
Hpy99I	CGWCG	1 cut(s)	742
HpyAV	CCTTC	7 cut(s)	91, 157, 523, 625, 721, 745, 920
HpyCH4III	ACNGT	1 cut(s)	742
HpyCH4V	TGCA	5 cut(s)	107, 239, 614, 935, 1133
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 72, 266, 278, 476, 556, 620
HpyF3I	CTNAG	2 cut(s)	341, 408
Hsp92II	CATG	3 cut(s)	718, 880, 994
HspAI	GCGC	2 cut(s)	192, 479
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	144, 303, 919, 949
LmnI	GCTCC	2 cut(s)	634, 1022
Lsp1109I	GCAGC	5 cut(s)	17, 19, 624, 632, 1062
LweI	GCATC	2 cut(s)	479, 601
MaeI	CTAG	2 cut(s)	252, 1261
MaeIII	GTNAC	4 cut(s)	223, 812, 826, 1147
MalI	GATC	4 cut(s)	146, 305, 921, 951
MbiI	CCGCTC	1 cut(s)	893
MboI	GATC	4 cut(s)	144, 303, 919, 949
MboII	GAAGA	7 cut(s)	52, 111, 410, 538, 674, 713, 1046
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	8 cut(s)	56, 87, 457, 501, 545, 1037, 1048, 1105
MlyI	GAGTC	1 cut(s)	421
MseI	TTAA	2 cut(s)	500, 762
MspA1I	CMGCKG	3 cut(s)	66, 269, 281
MspI	CCGG	2 cut(s)	329, 834
MspR9I	CCNGG	5 cut(s)	329, 330, 835, 970, 1223
MvaI	CCWGG	2 cut(s)	970, 1223
MvnI	CGCG	2 cut(s)	194, 269
MwoI	GCNNNNNNNGC	7 cut(s)	41, 72, 266, 278, 476, 556, 620
NciI	CCSGG	3 cut(s)	329, 330, 835
NdeII	GATC	4 cut(s)	144, 303, 919, 949
NlaIII	CATG	3 cut(s)	718, 880, 994
NlaIV	GGNNCC	2 cut(s)	285, 327
NspI	RCATGY	1 cut(s)	718
PaeI	GCATGC	1 cut(s)	718
PaeR7I	CTCGAG	1 cut(s)	474
PfeI	GAWTC	4 cut(s)	443, 521, 681, 1199
PkrI	GCNGC	8 cut(s)	7, 34, 68, 268, 271, 622, 639, 1077
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PpuMI	RGGWCCY	2 cut(s)	325, 929
Psp5II	RGGWCCY	2 cut(s)	325, 929
Psp6I	CCWGG	2 cut(s)	968, 1221
PspFI	CCCAGC	2 cut(s)	425, 773
PspGI	CCWGG	2 cut(s)	968, 1221
PspN4I	GGNNCC	2 cut(s)	285, 327
PspPI	GGNCC	3 cut(s)	311, 325, 929
PspPPI	RGGWCCY	2 cut(s)	325, 929
PsrI	GAACNNNNNNTAC	2 cut(s)	216, 248
PstI	CTGCAG	1 cut(s)	937
PsuI	RGATCY	1 cut(s)	144
RsaI	GTAC	5 cut(s)	300, 384, 909, 958, 1011
RsaNI	GTAC	5 cut(s)	299, 383, 908, 957, 1010
SacII	CCGCGG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	500, 762
SatI	GCNGC	8 cut(s)	6, 33, 67, 267, 270, 621, 638, 1076
Sau3AI	GATC	4 cut(s)	144, 303, 919, 949
Sau96I	GGNCC	3 cut(s)	311, 325, 929
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	5 cut(s)	329, 330, 835, 970, 1223
SduI	GDGCHC	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	479, 601
SfcI	CTRYAG	1 cut(s)	933
Sfr274I	CTCGAG	1 cut(s)	474
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SinI	GGWCC	3 cut(s)	311, 325, 929
SlaI	CTCGAG	1 cut(s)	474
SmaI	CCCGGG	1 cut(s)	330
SmlI	CTYRAG	3 cut(s)	416, 474, 1079
SmoI	CTYRAG	3 cut(s)	416, 474, 1079
SphI	GCATGC	1 cut(s)	718
Sse9I	AATT	8 cut(s)	56, 87, 457, 501, 545, 1037, 1048, 1105
SspMI	CTAG	2 cut(s)	252, 1261
StyD4I	CCNGG	5 cut(s)	327, 328, 833, 968, 1221
TaaI	ACNGT	1 cut(s)	742
TaqI	TCGA	7 cut(s)	200, 441, 475, 524, 561, 948, 996
TasI	AATT	8 cut(s)	56, 87, 457, 501, 545, 1037, 1048, 1105
TatI	WGTACW	3 cut(s)	298, 382, 956
TauI	GCSGC	3 cut(s)	69, 269, 272
TfiI	GAWTC	4 cut(s)	443, 521, 681, 1199
Tru1I	TTAA	2 cut(s)	500, 762
Tru9I	TTAA	2 cut(s)	500, 762
TscAI	CASTG	1 cut(s)	1140
TseI	GCWGC	5 cut(s)	5, 32, 620, 637, 1075
TspDTI	ATGAA	2 cut(s)	764, 934
TspGWI	ACGGA	4 cut(s)	436, 552, 693, 1166
TspMI	CCCGGG	1 cut(s)	328
TspRI	CASTG	1 cut(s)	1140
VpaK11BI	GGWCC	3 cut(s)	311, 325, 929
XapI	RAATTY	3 cut(s)	56, 457, 1037
XceI	RCATGY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	2 cut(s)	893, 1214
XhoI	CTCGAG	1 cut(s)	474
XmaI	CCCGGG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	2 cut(s)	252, 1261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.