Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Forward (+)

25754044 .. 25757385

Gene Structure 3342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G283500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCAGCCATTCTCTCCTGCCACCACTCCGCTTCTCCAGCTACCTCCTCCAAATTCATCAGTCCCAGCATACCCACAAACCGTACTCGCTTCTCAATTTCCCATAAACAATTTGGAACCCGCAGTTCTTCCCCACTTCCTATTAAATGCCAGATCCAGAACAGACAGCAGAAAGGGAAGTCATTTTCCATAAAGGAGTGTGCGATATCTATAGCTTTGGCCGTTGGATTAGTAACAGGAGTTCCTGCATTGGAATGGTCTAGCAATGCCTATGCGGCTAACCCAGTGTTGCCTGATCTTTCTGTACTGATCTCTGGACCCCCAATAAAGGACCCGGGGGCTTTGTTGAGATATGCTCTGCCTATCAATAATAAAGCTATCAGGGAAGTACAAAAACCACTTGAAGATATTACAGAGAGTCTGAAGGTAGCCGGAGTCAAAGCACTCGATTCTGTTGAGAGGAATTTGAGGCAGGCATCTCGAGCGCTGAAGCAGGGAAAGGCTTTAATTGTATCTGGATTAGCTGAATCGAAGAAGGACCATGGAGTTGAATTGCTCGGAAAGCTGGAAGCCGGAATGGATGAACTCCAACAGATTGTGGAGGATAGAAATAGAGACGGAGTAGCAGAAAAACAGAAGGAGCTACTTCAATATGTTGGGGGTGTTGAAGAGGATATGGTGGATGGATTCCCGTATGAAGTGCCTGAAGAATACCAAAGCATGCCTCTATTGAAGGGGAGAGCAACTGTGGATATGAAGGTCAAGGTTAAGGATAATCCTAGCCTTACTGATTGTGTCTTCCGTATTGTTCTTGATGGTTACAATGCTCCAGTAACTGCTGGGAACTTTGTAGACTTGGTGGAAAGACACTTTTATGATGGCATGGAAATCCAAAGAGCGGATGGTTTTGTTGTACAAACTGGTGATCCTGAAGGACCAGCAGAGGGTTTCATAGATCCAAGTACAGAGAAAACCAGGACAATACCATTAGAAATCACGGTGGAGGGAGAGAAATTACCTTTTTATGGATCAACTTTGGAAGAGCTTGGACTATACAAGGCTCAAACAAAGCTGCCCTTTAATGCATTTGGAACAATGGCTATGGCCAGAGATGAATTTGAGAACAATTCTGCATCCAGCCAGATTTTTTGGCTACTGAAGGAAAGTGAACTAACTCCCAGTAATTCCAATATATTAGATGGTCGTTATGCAGTGTTTGGATATGTAACACAAAATGAGGACTTTTTGGCAGATCTCAAGGTTGGTGATGTGATAGAGTCAATCCAAGTAGTCTCTGGGCTGGAAAATCTAGCCAATCCAAGCTACAAGATTGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

447

Amino Acids

48.7

Weight (kDa)

5.15

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	899
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	4 cut(s)	30, 121, 275, 899
AclWI	GGATC	4 cut(s)	148, 920, 950, 1036
AcoI	YGGCCR	2 cut(s)	219, 1104
AcsI	RAATTY	3 cut(s)	53, 463, 1115
AcuI	CTGAAG	5 cut(s)	443, 509, 726, 951, 1178
AfaI	GTAC	5 cut(s)	85, 306, 390, 915, 964
AfeI	AGCGCT	1 cut(s)	486
AfiI	CCNNNNNNNGG	4 cut(s)	328, 898, 944, 1025
AgsI	TTSAA	5 cut(s)	404, 551, 650, 668, 733
AjnI	CCWGG	1 cut(s)	974
AluBI	AGCT	9 cut(s)	41, 215, 377, 524, 565, 643, 1045, 1072, 1323
AluI	AGCT	9 cut(s)	41, 215, 377, 524, 565, 643, 1045, 1072, 1323
Alw26I	GTCTC	2 cut(s)	609, 1297
AlwI	GGATC	4 cut(s)	148, 920, 950, 1036
AlwNI	CAGNNNCTG	1 cut(s)	836
Ama87I	CYCGRG	2 cut(s)	334, 480
Aor51HI	AGCGCT	1 cut(s)	486
AoxI	GGCC	2 cut(s)	219, 1104
ApeKI	GCWGC	2 cut(s)	5, 1072
ApoI	RAATTY	3 cut(s)	53, 463, 1115
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	4 cut(s)	317, 331, 538, 935
AsuC2I	CCSGG	2 cut(s)	335, 336
AsuHPI	GGTGA	2 cut(s)	935, 1277
AvaI	CYCGRG	2 cut(s)	334, 480
AvaII	GGWCC	4 cut(s)	317, 331, 538, 935
BalI	TGGCCA	1 cut(s)	1106
BbsI	GAAGAC	1 cut(s)	790
BbvI	GCAGC	2 cut(s)	17, 1059
BccI	CCATC	5 cut(s)	677, 809, 872, 896, 1193
BceAI	ACGGC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciT130I	CCWGG	1 cut(s)	976
BcnI	CCSGG	2 cut(s)	335, 336
BcoDI	GTCTC	2 cut(s)	609, 1297
BfaI	CTAG	4 cut(s)	261, 780, 1310, 1339
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	1252
BisI	GCNGC	3 cut(s)	6, 276, 1073
BlsI	GCNGC	3 cut(s)	7, 277, 1074
Bme1390I	CCNGG	3 cut(s)	335, 336, 976
Bme18I	GGWCC	4 cut(s)	317, 331, 538, 935
BmeT110I	CYCGRG	2 cut(s)	334, 480
BmgT120I	GGNCC	4 cut(s)	317, 331, 538, 935
BmiI	GGNNCC	3 cut(s)	118, 319, 333
BmrFI	CCNGG	3 cut(s)	335, 336, 976
BmrI	ACTGGG	2 cut(s)	278, 1173
BmsI	GCATC	2 cut(s)	485, 1142
BmuI	ACTGGG	2 cut(s)	278, 1173
BpiI	GAAGAC	1 cut(s)	790
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	2 cut(s)	21, 813
BpuEI	CTTGAG	1 cut(s)	1241
BpuMI	CCSGG	2 cut(s)	335, 336
BsaJI	CCNNGG	3 cut(s)	334, 335, 541
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 898, 944, 1025
Bse1I	ACTGG	4 cut(s)	284, 830, 925, 1179
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	976
BseDI	CCNNGG	3 cut(s)	334, 335, 541
BseGI	GGATG	4 cut(s)	586, 688, 907, 1133
BseLI	CCNNNNNNNGG	4 cut(s)	328, 898, 944, 1025
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	4 cut(s)	284, 830, 925, 1179
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	17, 1059
BseYI	CCCAGC	2 cut(s)	65, 839
BshFI	GGCC	2 cut(s)	221, 1106
BsiHKCI	CYCGRG	2 cut(s)	334, 480
BsiSI	CCGG	3 cut(s)	335, 432, 573
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	4 cut(s)	328, 898, 944, 1025
BsmAI	GTCTC	2 cut(s)	609, 1297
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	221, 1106
BsoBI	CYCGRG	2 cut(s)	334, 480
Bsp1407I	TGTACA	1 cut(s)	913
Bsp143I	GATC	7 cut(s)	153, 295, 309, 925, 955, 1028, 1252
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	4 cut(s)	30, 121, 275, 899
BspANI	GGCC	2 cut(s)	221, 1106
BspLI	GGNNCC	3 cut(s)	118, 319, 333
BspPI	GGATC	4 cut(s)	148, 920, 950, 1036
BspQI	GCTCTTC	1 cut(s)	1035
BsrBI	CCGCTC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	913
BsrI	ACTGG	4 cut(s)	284, 830, 925, 1179
BssECI	CCNNGG	3 cut(s)	334, 335, 541
BssMI	GATC	7 cut(s)	153, 295, 309, 925, 955, 1028, 1252
BssT1I	CCWWGG	1 cut(s)	541
Bst2UI	CCWGG	1 cut(s)	976
Bst4CI	ACNGT	3 cut(s)	83, 748, 1000
Bst6I	CTCTTC	2 cut(s)	663, 1035
BstAUI	TGTACA	1 cut(s)	913
BstC8I	GCNNGC	3 cut(s)	474, 722, 1336
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	4 cut(s)	586, 688, 907, 1133
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	7 cut(s)	156, 298, 312, 928, 958, 1031, 1255
BstMAI	GTCTC	2 cut(s)	609, 1297
BstMBI	GATC	7 cut(s)	153, 295, 309, 925, 955, 1028, 1252
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 275, 482, 562
BstNI	CCWGG	1 cut(s)	976
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	3 cut(s)	333, 334, 974
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	17, 1059
BstV2I	GAAGAC	1 cut(s)	790
BstX2I	RGATCY	3 cut(s)	153, 955, 1252
BstYI	RGATCY	3 cut(s)	153, 955, 1252
BsuRI	GGCC	2 cut(s)	221, 1106
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	4 cut(s)	586, 688, 907, 1133
BtsI	GCAGTG	1 cut(s)	1218
BtsIMutI	CAGTG	2 cut(s)	291, 1218
Cac8I	GCNNGC	3 cut(s)	474, 722, 1336
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	4 cut(s)	317, 331, 538, 935
Cfr9I	CCCGGG	1 cut(s)	334
Csp6I	GTAC	5 cut(s)	84, 305, 389, 914, 963
CviAII	CATG	3 cut(s)	542, 721, 883
CviQI	GTAC	5 cut(s)	84, 305, 389, 914, 963
DpnI	GATC	7 cut(s)	155, 297, 311, 927, 957, 1030, 1254
DpnII	GATC	7 cut(s)	153, 295, 309, 925, 955, 1028, 1252
EaeI	YGGCCR	2 cut(s)	219, 1104
Eam1104I	CTCTTC	2 cut(s)	663, 1035
EarI	CTCTTC	2 cut(s)	663, 1035
Eco130I	CCWWGG	1 cut(s)	541
Eco32I	GATATC	1 cut(s)	207
Eco47I	GGWCC	4 cut(s)	317, 331, 538, 935
Eco47III	AGCGCT	1 cut(s)	486
Eco57I	CTGAAG	5 cut(s)	443, 509, 726, 951, 1178
Eco88I	CYCGRG	2 cut(s)	334, 480
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	974
EcoRV	GATATC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	1087
ErhI	CCWWGG	1 cut(s)	541
Esp3I	CGTCTC	1 cut(s)	609
FaeI	CATG	3 cut(s)	545, 724, 886
FalI	AAGNNNNNCTT	2 cut(s)	1061, 1093
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	3 cut(s)	541, 720, 882
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	3 cut(s)	6, 276, 1073
FokI	GGATG	4 cut(s)	593, 695, 914, 1120
Fsp4HI	GCNGC	3 cut(s)	6, 276, 1073
FspBI	CTAG	4 cut(s)	261, 780, 1310, 1339
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	3 cut(s)	6, 276, 1073
GsaI	CCCAGC	2 cut(s)	69, 843
GsuI	CTGGAG	2 cut(s)	21, 813
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	221, 1106
HapII	CCGG	3 cut(s)	335, 432, 573
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	3 cut(s)	545, 724, 886
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HinfI	GANTC	6 cut(s)	418, 435, 449, 527, 687, 1277
HpaII	CCGG	3 cut(s)	335, 432, 573
HphI	GGTGA	2 cut(s)	935, 1277
Hpy166II	GTNNAC	2 cut(s)	853, 1169
Hpy188I	TCNGA	2 cut(s)	423, 560
Hpy188III	TCNNGA	6 cut(s)	157, 315, 480, 516, 812, 929
Hpy8I	GTNNAC	2 cut(s)	853, 1169
HpyAV	CCTTC	7 cut(s)	418, 529, 631, 727, 751, 926, 1153
HpyCH4III	ACNGT	3 cut(s)	83, 748, 1000
HpyCH4V	TGCA	4 cut(s)	248, 1085, 1133, 1211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 275, 482, 562
Hsp92II	CATG	3 cut(s)	545, 724, 886
HspAI	GCGC	1 cut(s)	485
Kzo9I	GATC	7 cut(s)	153, 295, 309, 925, 955, 1028, 1252
LguI	GCTCTTC	1 cut(s)	1035
LmnI	GCTCC	2 cut(s)	640, 832
Lsp1109I	GCAGC	2 cut(s)	17, 1059
LweI	GCATC	2 cut(s)	485, 1142
MaeI	CTAG	4 cut(s)	261, 780, 1310, 1339
MaeIII	GTNAC	4 cut(s)	232, 818, 832, 1225
MalI	GATC	7 cut(s)	155, 297, 311, 927, 957, 1030, 1254
MbiI	CCGCTC	1 cut(s)	899
MboI	GATC	7 cut(s)	153, 295, 309, 925, 955, 1028, 1252
MboII	GAAGA	7 cut(s)	120, 416, 544, 680, 719, 790, 1052
MflI	RGATCY	3 cut(s)	153, 955, 1252
MlsI	TGGCCA	1 cut(s)	1106
MluNI	TGGCCA	1 cut(s)	1106
MlyI	GAGTC	3 cut(s)	427, 444, 1286
MmeI	TCCRAC	2 cut(s)	205, 613
Mox20I	TGGCCA	1 cut(s)	1106
Mph1103I	ATGCAT	1 cut(s)	1087
MscI	TGGCCA	1 cut(s)	1106
MseI	TTAA	4 cut(s)	144, 506, 768, 1080
MslI	CAYNNNNRTG	2 cut(s)	253, 873
Msp20I	TGGCCA	1 cut(s)	1106
MspI	CCGG	3 cut(s)	335, 432, 573
MspR9I	CCNGG	3 cut(s)	335, 336, 976
MvaI	CCWGG	1 cut(s)	976
MwoI	GCNNNNNNNGC	4 cut(s)	38, 275, 482, 562
NciI	CCSGG	2 cut(s)	335, 336
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	7 cut(s)	153, 295, 309, 925, 955, 1028, 1252
NlaIII	CATG	3 cut(s)	545, 724, 886
NlaIV	GGNNCC	3 cut(s)	118, 319, 333
NsiI	ATGCAT	1 cut(s)	1087
NspI	RCATGY	1 cut(s)	724
PaeI	GCATGC	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	1035
PfeI	GAWTC	3 cut(s)	449, 527, 687
PkrI	GCNGC	3 cut(s)	7, 277, 1074
PleI	GAGTC	3 cut(s)	426, 443, 1285
PpsI	GAGTC	3 cut(s)	426, 443, 1285
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	974
PspFI	CCCAGC	2 cut(s)	65, 839
PspGI	CCWGG	1 cut(s)	974
PspN4I	GGNNCC	3 cut(s)	118, 319, 333
PspPI	GGNCC	4 cut(s)	317, 331, 538, 935
PspPPI	RGGWCCY	1 cut(s)	331
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	3 cut(s)	153, 955, 1252
RsaI	GTAC	5 cut(s)	85, 306, 390, 915, 964
RsaNI	GTAC	5 cut(s)	84, 305, 389, 914, 963
RseI	CAYNNNNRTG	2 cut(s)	253, 873
SapI	GCTCTTC	1 cut(s)	1035
SaqAI	TTAA	4 cut(s)	144, 506, 768, 1080
SatI	GCNGC	3 cut(s)	6, 276, 1073
Sau3AI	GATC	7 cut(s)	153, 295, 309, 925, 955, 1028, 1252
Sau96I	GGNCC	4 cut(s)	317, 331, 538, 935
SchI	GAGTC	3 cut(s)	427, 444, 1286
ScrFI	CCNGG	3 cut(s)	335, 336, 976
SfaNI	GCATC	2 cut(s)	485, 1142
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	480
SinI	GGWCC	4 cut(s)	317, 331, 538, 935
SlaI	CTCGAG	1 cut(s)	480
SmaI	CCCGGG	1 cut(s)	336
SmiMI	CAYNNNNRTG	2 cut(s)	253, 873
SmlI	CTYRAG	2 cut(s)	480, 1256
SmoI	CTYRAG	2 cut(s)	480, 1256
SphI	GCATGC	1 cut(s)	724
SsiI	CCGC	4 cut(s)	30, 121, 275, 899
SspMI	CTAG	4 cut(s)	261, 780, 1310, 1339
StyD4I	CCNGG	3 cut(s)	333, 334, 974
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	3 cut(s)	83, 748, 1000
TaqI	TCGA	3 cut(s)	447, 481, 530
TatI	WGTACW	4 cut(s)	304, 388, 913, 962
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	449, 527, 687
Tru1I	TTAA	4 cut(s)	144, 506, 768, 1080
Tru9I	TTAA	4 cut(s)	144, 506, 768, 1080
TscAI	CASTG	2 cut(s)	291, 1218
TseI	GCWGC	2 cut(s)	5, 1072
TspDTI	ATGAA	6 cut(s)	46, 597, 711, 770, 940, 1128
TspGWI	ACGGA	2 cut(s)	633, 791
TspMI	CCCGGG	1 cut(s)	334
TspRI	CASTG	2 cut(s)	291, 1218
VpaK11BI	GGWCC	4 cut(s)	317, 331, 538, 935
XapI	RAATTY	3 cut(s)	53, 463, 1115
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	3 cut(s)	110, 899, 1292
XhoI	CTCGAG	1 cut(s)	480
XmaI	CCCGGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	4 cut(s)	261, 780, 1310, 1339
Zsp2I	ATGCAT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.