Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Forward (+)

85032486 .. 85034413

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGATGAGTTCATGAACTGTCTTTACTTGTATTGGAAAGGGAGTTCTTTTTCGATAAAGGAGTGTACGATTTCAATAGCTTTGACGGTGGGGCTAATAACAGGAGTTCCTGCATTGGAATTGTCCAACAATGCGTATGCAGCTACCCGAGTGCTGCCTGATCTGGCTGTACTGATCTCCAGATCGCCAATAAAGGACCCTGGGGCATTGGAGGTACAAAAGCCACTTGAAGATATCACAGAGAGTCTCAAGATAGCTGGAGTCAAGGCACTAGATTCAACTGAGAGGAATTTGAGGCAGGCGTCTCGAGCACTGAAGCAGGGGAAGTCTTTAATTGTGACTGGATTAGCTGAATCGAAGAAGGATCATGGTGCTGAAATGCTTGGCAAGCTGGAAGTAGGAATGGATGAGCTCCAACAGATTGTGGAGGATAAAAATAGAGATGAAATTGCTAAGAAACAGAAAGAACTACTACTCTATGTTGGAGCGGACGGATTTTTTGTACAAACTGGTGATCCTGAAAGACCTGCAGAGGGTTTCATTGATCCAAGTACCGAGAAAACCAGGACAATACCTTTAGAAATCTCTGTAGTTGGAGAGAAAGCACCCTTTTATGGAGCAACTTTGGAAGAACTGGGGCTATACAAGGCTCAGGCAAAGCTTCCATTTAACGCATTTGGAACAATGGCAATGGCCCGAGATGTGAGAAACATTTCTCTTCTTCAACTGTATATTTTTTCTTGGATCAATTTGATGGCTAACCGAGAGATTCCCATTGATTCTGTTGACAGGAATTTGAGAACAATTCTGCTTCGAGCCAGATATTTTGGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

278

Amino Acids

30.86

Weight (kDa)

5.51

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	60 - 162	1.5e-27	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AccBSI	CCGCTC	1 cut(s)	488
AciI	CCGC	1 cut(s)	488
AclWI	GGATC	4 cut(s)	372, 509, 539, 752
AcsI	RAATTY	2 cut(s)	289, 793
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	5 cut(s)	67, 171, 216, 504, 553
AfiI	CCNNNNNNNGG	2 cut(s)	533, 614
AgsI	TTSAA	4 cut(s)	75, 230, 279, 725
AjnI	CCWGG	2 cut(s)	199, 563
AloI	GAACNNNNNNTCC	2 cut(s)	28, 60
AluBI	AGCT	7 cut(s)	80, 143, 257, 350, 391, 412, 661
AluI	AGCT	7 cut(s)	80, 143, 257, 350, 391, 412, 661
Alw21I	GWGCWC	2 cut(s)	313, 414
Alw26I	GTCTC	2 cut(s)	251, 309
AlwI	GGATC	4 cut(s)	372, 509, 539, 752
Ama87I	CYCGRG	3 cut(s)	147, 306, 696
AoxI	GGCC	1 cut(s)	693
ApeKI	GCWGC	2 cut(s)	140, 154
ApoI	RAATTY	2 cut(s)	289, 793
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp700I	GAANNNNTTC	1 cut(s)	712
AspS9I	GGNCC	2 cut(s)	196, 694
AsuHPI	GGTGA	1 cut(s)	524
AvaI	CYCGRG	3 cut(s)	147, 306, 696
AvaII	GGWCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	313, 414
BbvI	GCAGC	2 cut(s)	141, 152
BccI	CCATC	1 cut(s)	748
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	2 cut(s)	201, 565
BcoDI	GTCTC	2 cut(s)	251, 309
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	2 cut(s)	528, 588
BfuAI	ACCTGC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	141, 155
BlsI	GCNGC	2 cut(s)	142, 156
Bme1390I	CCNGG	2 cut(s)	201, 565
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	3 cut(s)	147, 306, 696
BmgT120I	GGNCC	2 cut(s)	196, 694
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	201, 565
BmrI	ACTGGG	1 cut(s)	644
BmuI	ACTGGG	1 cut(s)	644
BpmI	CTGGAG	2 cut(s)	163, 279
Bpu10I	CCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	199, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 614
Bse1I	ACTGG	3 cut(s)	346, 514, 639
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	201, 565
BseDI	CCNNGG	2 cut(s)	199, 200
BseGI	GGATG	2 cut(s)	10, 412
BseLI	CCNNNNNNNGG	2 cut(s)	533, 614
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	2 cut(s)	273, 665
BseNI	ACTGG	3 cut(s)	346, 514, 639
BseXI	GCAGC	2 cut(s)	141, 152
BshFI	GGCC	1 cut(s)	695
BsiHKAI	GWGCWC	2 cut(s)	313, 414
BsiHKCI	CYCGRG	3 cut(s)	147, 306, 696
BslI	CCNNNNNNNGG	2 cut(s)	533, 614
BsmAI	GTCTC	2 cut(s)	251, 309
BsmBI	CGTCTC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	695
BsoBI	CYCGRG	3 cut(s)	147, 306, 696
Bsp1286I	GDGCHC	2 cut(s)	313, 414
Bsp1407I	TGTACA	1 cut(s)	502
Bsp143I	GATC	7 cut(s)	160, 174, 182, 364, 514, 544, 744
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	2 cut(s)	274, 664
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	4 cut(s)	372, 509, 539, 752
BsrBI	CCGCTC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	696
BsrGI	TGTACA	1 cut(s)	502
BsrI	ACTGG	3 cut(s)	346, 514, 639
BssECI	CCNNGG	2 cut(s)	199, 200
BssMI	GATC	7 cut(s)	160, 174, 182, 364, 514, 544, 744
BssNI	GRCGYC	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	201, 565
Bst4CI	ACNGT	3 cut(s)	20, 88, 729
Bst6I	CTCTTC	1 cut(s)	723
BstACI	GRCGYC	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	300, 389
BstDEI	CTNAG	3 cut(s)	282, 453, 651
BstF5I	GGATG	2 cut(s)	10, 412
BstKTI	GATC	7 cut(s)	163, 177, 185, 367, 517, 547, 747
BstMAI	GTCTC	2 cut(s)	251, 309
BstMBI	GATC	7 cut(s)	160, 174, 182, 364, 514, 544, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 308, 388
BstNI	CCWGG	2 cut(s)	201, 565
BstSCI	CCNGG	2 cut(s)	199, 563
BstSFI	CTRYAG	2 cut(s)	528, 588
BstV1I	GCAGC	2 cut(s)	141, 152
BsuRI	GGCC	1 cut(s)	695
BtsCI	GGATG	2 cut(s)	10, 412
BtsIMutI	CAGTG	1 cut(s)	311
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	300, 389
CciI	TCATGA	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	196, 694
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	5 cut(s)	66, 170, 215, 503, 552
CviAII	CATG	2 cut(s)	13, 368
CviQI	GTAC	5 cut(s)	66, 170, 215, 503, 552
DdeI	CTNAG	3 cut(s)	282, 453, 651
DpnI	GATC	7 cut(s)	162, 176, 184, 366, 516, 546, 746
DpnII	GATC	7 cut(s)	160, 174, 182, 364, 514, 544, 744
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
Ecl136II	GAGCTC	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	335
Eco88I	CYCGRG	3 cut(s)	147, 306, 696
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	199, 563
EcoRV	GATATC	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	2 cut(s)	16, 371
FaiI	YATR	7 cut(s)	14, 138, 369, 480, 615, 643, 732
FatI	CATG	2 cut(s)	12, 367
Fnu4HI	GCNGC	2 cut(s)	141, 155
FokI	GGATG	2 cut(s)	17, 419
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	141, 155
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	2 cut(s)	141, 155
GsuI	CTGGAG	2 cut(s)	163, 279
HaeIII	GGCC	1 cut(s)	695
HgaI	GACGC	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	16, 371
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	6 cut(s)	244, 261, 275, 353, 769, 779
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	66, 787
Hpy188III	TCNNGA	5 cut(s)	13, 180, 250, 306, 518
Hpy8I	GTNNAC	2 cut(s)	66, 787
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	3 cut(s)	20, 88, 729
HpyCH4V	TGCA	3 cut(s)	113, 140, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 308, 388
HpyF3I	CTNAG	3 cut(s)	282, 453, 651
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	16, 371
Kzo9I	GATC	7 cut(s)	160, 174, 182, 364, 514, 544, 744
LmnI	GCTCC	3 cut(s)	417, 485, 617
Lsp1109I	GCAGC	2 cut(s)	141, 152
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	337, 830
MalI	GATC	7 cut(s)	162, 176, 184, 366, 516, 546, 746
MbiI	CCGCTC	1 cut(s)	488
MboI	GATC	7 cut(s)	160, 174, 182, 364, 514, 544, 744
MboII	GAAGA	5 cut(s)	242, 370, 641, 710, 713
MhlI	GDGCHC	2 cut(s)	313, 414
MluCI	AATT	7 cut(s)	119, 289, 333, 447, 748, 793, 804
MlyI	GAGTC	2 cut(s)	253, 270
MmeI	TCCRAC	4 cut(s)	150, 439, 463, 574
MnlI	CCTC	5 cut(s)	205, 279, 288, 421, 526
MroXI	GAANNNNTTC	1 cut(s)	712
MseI	TTAA	2 cut(s)	332, 669
MspR9I	CCNGG	2 cut(s)	201, 565
MvaI	CCWGG	2 cut(s)	201, 565
MwoI	GCNNNNNNNGC	3 cut(s)	140, 308, 388
NdeII	GATC	7 cut(s)	160, 174, 182, 364, 514, 544, 744
NlaIII	CATG	2 cut(s)	16, 371
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	306
PagI	TCATGA	1 cut(s)	12
PasI	CCCWGGG	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	712
PfeI	GAWTC	4 cut(s)	275, 353, 769, 779
PkrI	GCNGC	2 cut(s)	142, 156
PleI	GAGTC	2 cut(s)	252, 269
PpsI	GAGTC	2 cut(s)	252, 269
PpuMI	RGGWCCY	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	199, 563
PspGI	CCWGG	2 cut(s)	199, 563
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	196, 694
PspPPI	RGGWCCY	1 cut(s)	196
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
PstI	CTGCAG	1 cut(s)	532
RsaI	GTAC	5 cut(s)	67, 171, 216, 504, 553
RsaNI	GTAC	5 cut(s)	66, 170, 215, 503, 552
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	332, 669
SatI	GCNGC	2 cut(s)	141, 155
Sau3AI	GATC	7 cut(s)	160, 174, 182, 364, 514, 544, 744
Sau96I	GGNCC	2 cut(s)	196, 694
SchI	GAGTC	2 cut(s)	253, 270
ScrFI	CCNGG	2 cut(s)	201, 565
SduI	GDGCHC	2 cut(s)	313, 414
SfcI	CTRYAG	2 cut(s)	528, 588
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	248, 306
SmoI	CTYRAG	2 cut(s)	248, 306
Sse9I	AATT	7 cut(s)	119, 289, 333, 447, 748, 793, 804
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	199, 563
TaaI	ACNGT	3 cut(s)	20, 88, 729
TaqI	TCGA	4 cut(s)	53, 307, 356, 814
TasI	AATT	7 cut(s)	119, 289, 333, 447, 748, 793, 804
TatI	WGTACW	2 cut(s)	169, 502
TfiI	GAWTC	4 cut(s)	275, 353, 769, 779
Tru1I	TTAA	2 cut(s)	332, 669
Tru9I	TTAA	2 cut(s)	332, 669
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	140, 154
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	3 cut(s)	29, 459, 529
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	2 cut(s)	289, 793
XhoI	CTCGAG	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	712
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.