MD17G1035100.v1.1

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
2517727 .. 2520624
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1035100.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGGCAGCCCTCCTCTCCTGCCCCTACTCTGCTGCTTCTCCAGCTTCCTCCTCCTCCACCAAATTCTTCAGCCGCCACCGCCCTCCCTTCCCAATTTCCCACAACCACCTTGCCACCCGCCGTTCCTCGCCACTCCCTATTCAATGCCAGATCCACAACCAACAGCAGAAAAGGAAGTCATTCTCCATCAAGGAGTGCGCGATTTCGATAGCGTTGGCGGTGGGATTAGTGACAGGAGTTCCTGCATTGGATTGGTGTAGCAATGCCTATGCGGCGGCTAATCCAGTGGTGCCTGATCTGGCTGTACTGATCTCTGGACCGCCGATAAAGGACCCGGGGGCATTGCTGAGATATTCTCTGCCTATTGATAACAAAGCTATCAGGGAAGTACAGAAACCGCTTGAAGATATCACTGAGAGTCTCAAGGTAGCTGGGGTCAAGGCACTCGATTCCGCTGAAAGGAATTTGAGGCAGGCGTCTAGAGCACTGACGCAGGGGAAGTCTTTAGTTGTATCTGGATTAGCTGAATCGAAGAAGGAACACGGAGTTGAATTGCTTGCCAAGCTGGAAGCTGGAATGAAGGAGCTTCAGCAGATTGTGGAGGATAGAAATAGAGATGAAGTAGCAGCAAAACAGAAGGAGCTACTTCAATATGTTGGGGGTGTTGAAGAGGATATGGTGGACGGATTCCCTTACCAAGTGCCTGAAGAATACCAAAGCATGCCTCTGTTGAAGGGGAGAGCGACGGTGGATATGAAGGTCAAGGTTAAGGACAATCCCAGCCTTTCTGATTGTGTCTTCCGTATCGTTCTTGATGGTTACAACGCCCCTGTAACTGCCGGGAACTTTGTAGATTTGGTGGAACGACACTTCTATGACGGCATGGAAATCCAACGAGCGGATGGTTTTGTTGTGCAAACTGGTGACCCTGAAGGACCTGCAGAGGGTTTCATAGATCCAAGTACAGAGAAAACCAGGGCAATACCATTAGAAATCACCGTCGAGGGAGAGAAATTACCTTTTTATGGAGAAACCTTGGAAGAGCTCGGGCTATACAAGGCACAAACAAAGCTTCCGTTCAATGCGTTCGGAACAATGGCTATGGCGAGAGATGAATTTGAGGACAATTCTGCTTCCAGCCAAGTGTTCTGGCTGCTCAAGGAAAGTGAGCTAACTCCAAGCAATTCCAACATATTGGATGGTAGGTACTCGGTGTTTGGATATGTCACACAGAACGAAGACTTCTTGGCAGATTTGAAAGTTGGTGACGTTATAGAATCGATCCAAGTGGTGTCTGGCCTGGAAAATCTTGCCAATCCGAGCTACAAGATTGCTGGCTAG

Protein Analysis

447

Amino Acids

48.78

Weight (kDa)

5.09

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYP38_PsbQ-like PF21329 111 - 227 2.4e-43 Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase PF00160 267 - 425 5.6e-22 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 946
AccB1I GGYRCC 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 899
AccII CGCG 1 cut(s) 200
AclWI GGATC 3 cut(s) 145, 950, 1276
AcsI RAATTY 3 cut(s) 62, 463, 1115
AcuI CTGAAG 4 cut(s) 52, 572, 726, 951
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 4 cut(s) 306, 390, 964, 1208
AfiI CCNNNNNNNGG 4 cut(s) 459, 898, 944, 1025
AgsI TTSAA 8 cut(s) 143, 404, 551, 650, 668, 733, 1081, 1258
AjnI CCWGG 2 cut(s) 974, 1299
Alw21I GWGCWC 2 cut(s) 487, 1047
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 3 cut(s) 145, 950, 1276
Ama87I CYCGRG 2 cut(s) 334, 1046
AoxI GGCC 1 cut(s) 1297
ApeKI GCWGC 4 cut(s) 5, 32, 626, 1153
ApoI RAATTY 3 cut(s) 62, 463, 1115
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 317, 331, 935
AsuC2I CCSGG 3 cut(s) 335, 336, 841
AsuHPI GGTGA 3 cut(s) 935, 988, 1277
AvaI CYCGRG 2 cut(s) 334, 1046
AvaII GGWCC 3 cut(s) 317, 331, 935
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 1047
BbsI GAAGAC 2 cut(s) 790, 1245
Bbv12I GWGCWC 2 cut(s) 487, 1047
BbvI GCAGC 4 cut(s) 17, 19, 638, 1140
BccI CCATC 4 cut(s) 194, 809, 896, 1193
BceAI ACGGC 2 cut(s) 105, 895
BciT130I CCWGG 2 cut(s) 976, 1301
BcnI CCSGG 3 cut(s) 335, 336, 841
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 2 cut(s) 480, 1339
BfmI CTRYAG 1 cut(s) 939
BfuAI ACCTGC 1 cut(s) 946
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 7 cut(s) 6, 33, 73, 273, 276, 627, 1154
BlsI GCNGC 7 cut(s) 7, 34, 74, 274, 277, 628, 1155
Bme1390I CCNGG 5 cut(s) 335, 336, 841, 976, 1301
Bme18I GGWCC 3 cut(s) 317, 331, 935
BmeT110I CYCGRG 2 cut(s) 334, 1046
BmgT120I GGNCC 3 cut(s) 317, 331, 935
BmiI GGNNCC 2 cut(s) 291, 333
BmrFI CCNGG 5 cut(s) 335, 336, 841, 976, 1301
BpiI GAAGAC 2 cut(s) 790, 1245
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpmI CTGGAG 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 407, 1142
BpuMI CCSGG 3 cut(s) 335, 336, 841
Bsa29I ATCGAT 1 cut(s) 1280
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 4 cut(s) 334, 335, 975, 1035
Bsc4I CCNNNNNNNGG 4 cut(s) 459, 898, 944, 1025
Bse1I ACTGG 2 cut(s) 284, 925
Bse3DI GCAATG 2 cut(s) 268, 341
BseBI CCWGG 2 cut(s) 976, 1301
BseCI ATCGAT 1 cut(s) 1280
BseDI CCNNGG 4 cut(s) 334, 335, 975, 1035
BseGI GGATG 2 cut(s) 907, 1204
BseLI CCNNNNNNNGG 4 cut(s) 459, 898, 944, 1025
BseMI GCAATG 2 cut(s) 268, 341
BseMII CTCAG 2 cut(s) 338, 405
BseNI ACTGG 2 cut(s) 284, 925
BseRI GAGGAG 2 cut(s) 40, 43
BseXI GCAGC 4 cut(s) 17, 19, 638, 1140
BseYI CCCAGC 2 cut(s) 431, 779
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 1299
BshNI GGYRCC 1 cut(s) 289
BshVI ATCGAT 1 cut(s) 1280
BsiHKAI GWGCWC 2 cut(s) 487, 1047
BsiHKCI CYCGRG 2 cut(s) 334, 1046
BsiSI CCGG 2 cut(s) 335, 840
BslI CCNNNNNNNGG 4 cut(s) 459, 898, 944, 1025
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 1 cut(s) 1299
BsoBI CYCGRG 2 cut(s) 334, 1046
Bsp1286I GDGCHC 2 cut(s) 487, 1047
Bsp143I GATC 5 cut(s) 150, 295, 309, 955, 1281
BspANI GGCC 1 cut(s) 1299
BspCNI CTCAG 2 cut(s) 339, 406
BspDI ATCGAT 1 cut(s) 1280
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 291, 333
BspMAI CTGCAG 1 cut(s) 943
BspMI ACCTGC 1 cut(s) 946
BspPI GGATC 3 cut(s) 145, 950, 1276
BspQI GCTCTTC 1 cut(s) 1035
BspT107I GGYRCC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 899
BsrDI GCAATG 2 cut(s) 268, 341
BsrI ACTGG 2 cut(s) 284, 925
BssECI CCNNGG 4 cut(s) 334, 335, 975, 1035
BssMI GATC 5 cut(s) 150, 295, 309, 955, 1281
BssNI GRCGYC 1 cut(s) 476
BssT1I CCWWGG 1 cut(s) 1035
Bst2UI CCWGG 2 cut(s) 976, 1301
Bst4CI ACNGT 2 cut(s) 748, 1000
Bst6I CTCTTC 2 cut(s) 663, 1035
BstACI GRCGYC 1 cut(s) 476
BstC8I GCNNGC 4 cut(s) 474, 558, 722, 1336
BstDEI CTNAG 2 cut(s) 347, 414
BstEII GGTNACC 1 cut(s) 923
BstF5I GGATG 2 cut(s) 907, 1204
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 5 cut(s) 153, 298, 312, 958, 1284
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 5 cut(s) 150, 295, 309, 955, 1281
BstMWI GCNNNNNNNGC 5 cut(s) 41, 78, 272, 482, 562
BstNI CCWGG 2 cut(s) 976, 1301
BstNSI RCATGY 1 cut(s) 724
BstPI GGTNACC 1 cut(s) 923
BstSCI CCNGG 5 cut(s) 333, 334, 839, 974, 1299
BstSFI CTRYAG 1 cut(s) 939
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 4 cut(s) 17, 19, 638, 1140
BstV2I GAAGAC 2 cut(s) 790, 1245
BstX2I RGATCY 2 cut(s) 150, 955
BstXI CCANNNNNNTGG 1 cut(s) 1195
BstYI RGATCY 2 cut(s) 150, 955
Bsu15I ATCGAT 1 cut(s) 1280
BsuRI GGCC 1 cut(s) 1299
BsuTUI ATCGAT 1 cut(s) 1280
BtsCI GGATG 2 cut(s) 907, 1204
BtsIMutI CAGTG 3 cut(s) 291, 411, 485
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 4 cut(s) 474, 558, 722, 1336
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 317, 331, 935
Cfr9I CCCGGG 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 1280
CseI GACGC 2 cut(s) 465, 499
Csp6I GTAC 4 cut(s) 305, 389, 963, 1207
CviAII CATG 2 cut(s) 721, 883
CviQI GTAC 4 cut(s) 305, 389, 963, 1207
DdeI CTNAG 2 cut(s) 347, 414
DpnI GATC 5 cut(s) 152, 297, 311, 957, 1283
DpnII GATC 5 cut(s) 150, 295, 309, 955, 1281
Eam1104I CTCTTC 2 cut(s) 663, 1035
EarI CTCTTC 2 cut(s) 663, 1035
Ecl136II GAGCTC 1 cut(s) 1045
Eco130I CCWWGG 1 cut(s) 1035
Eco24I GRGCYC 1 cut(s) 1047
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 3 cut(s) 317, 331, 935
Eco53kI GAGCTC 1 cut(s) 1045
Eco57I CTGAAG 4 cut(s) 52, 572, 726, 951
Eco88I CYCGRG 2 cut(s) 334, 1046
Eco91I GGTNACC 1 cut(s) 923
EcoICRI GAGCTC 1 cut(s) 1045
EcoO109I RGGNCCY 2 cut(s) 331, 935
EcoO65I GGTNACC 1 cut(s) 923
EcoRII CCWGG 2 cut(s) 974, 1299
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 1035
EcoT38I GRGCYC 1 cut(s) 1047
ErhI CCWWGG 1 cut(s) 1035
FaeI CATG 2 cut(s) 724, 886
FatI CATG 2 cut(s) 720, 882
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 7 cut(s) 6, 33, 73, 273, 276, 627, 1154
FokI GGATG 2 cut(s) 914, 1211
FriOI GRGCYC 1 cut(s) 1047
Fsp4HI GCNGC 7 cut(s) 6, 33, 73, 273, 276, 627, 1154
FspBI CTAG 2 cut(s) 480, 1339
GlaI GCGC 1 cut(s) 199
GluI GCNGC 7 cut(s) 6, 33, 73, 273, 276, 627, 1154
GsaI CCCAGC 2 cut(s) 435, 783
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 1299
HapII CCGG 2 cut(s) 335, 840
HgaI GACGC 2 cut(s) 465, 499
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 2 cut(s) 724, 886
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 1070
HinfI GANTC 5 cut(s) 418, 449, 527, 687, 1277
HpaII CCGG 2 cut(s) 335, 840
HphI GGTGA 3 cut(s) 935, 988, 1277
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 3 cut(s) 790, 1091, 1320
Hpy188III TCNNGA 4 cut(s) 315, 480, 516, 812
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 2 cut(s) 748, 1004
HpyAV CCTTC 7 cut(s) 97, 529, 574, 631, 727, 751, 926
HpyCH4III ACNGT 2 cut(s) 748, 1000
HpyCH4IV ACGT 1 cut(s) 1269
HpyCH4V TGCA 3 cut(s) 245, 916, 941
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 78, 272, 482, 562
HpyF3I CTNAG 2 cut(s) 347, 414
HpySE526I ACGT 1 cut(s) 1269
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 2 cut(s) 724, 886
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 5 cut(s) 150, 295, 309, 955, 1281
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 2 cut(s) 583, 640
Lsp1109I GCAGC 4 cut(s) 17, 19, 638, 1140
MaeI CTAG 2 cut(s) 480, 1339
MaeII ACGT 1 cut(s) 1269
MaeIII GTNAC 6 cut(s) 229, 818, 832, 923, 1225, 1265
MalI GATC 5 cut(s) 152, 297, 311, 957, 1283
MbiI CCGCTC 1 cut(s) 899
MboI GATC 5 cut(s) 150, 295, 309, 955, 1281
MboII GAAGA 8 cut(s) 58, 416, 544, 680, 719, 790, 1052, 1250
MflI RGATCY 2 cut(s) 150, 955
MhlI GDGCHC 2 cut(s) 487, 1047
MluCI AATT 8 cut(s) 62, 93, 463, 551, 1013, 1115, 1126, 1183
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 2 cut(s) 916, 1212
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 768
MslI CAYNNNNRTG 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 2 cut(s) 335, 840
MspR9I CCNGG 5 cut(s) 335, 336, 841, 976, 1301
MvaI CCWGG 2 cut(s) 976, 1301
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 5 cut(s) 41, 78, 272, 482, 562
NciI CCSGG 3 cut(s) 335, 336, 841
NdeII GATC 5 cut(s) 150, 295, 309, 955, 1281
NlaIII CATG 2 cut(s) 724, 886
NlaIV GGNNCC 2 cut(s) 291, 333
NmuCI GTSAC 4 cut(s) 229, 923, 1225, 1265
NspI RCATGY 1 cut(s) 724
PaeI GCATGC 1 cut(s) 724
PciSI GCTCTTC 1 cut(s) 1035
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 4 cut(s) 449, 527, 687, 1277
PkrI GCNGC 7 cut(s) 7, 34, 74, 274, 277, 628, 1155
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
PpuMI RGGWCCY 2 cut(s) 331, 935
Psp124BI GAGCTC 1 cut(s) 1047
Psp5II RGGWCCY 2 cut(s) 331, 935
Psp6I CCWGG 2 cut(s) 974, 1299
PspEI GGTNACC 1 cut(s) 923
PspFI CCCAGC 2 cut(s) 431, 779
PspGI CCWGG 2 cut(s) 974, 1299
PspN4I GGNNCC 2 cut(s) 291, 333
PspPI GGNCC 3 cut(s) 317, 331, 935
PspPPI RGGWCCY 2 cut(s) 331, 935
PstI CTGCAG 1 cut(s) 943
PsuI RGATCY 2 cut(s) 150, 955
RsaI GTAC 4 cut(s) 306, 390, 964, 1208
RsaNI GTAC 4 cut(s) 305, 389, 963, 1207
RseI CAYNNNNRTG 1 cut(s) 873
SacI GAGCTC 1 cut(s) 1047
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 7 cut(s) 6, 33, 73, 273, 276, 627, 1154
Sau3AI GATC 5 cut(s) 150, 295, 309, 955, 1281
Sau96I GGNCC 3 cut(s) 317, 331, 935
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 5 cut(s) 335, 336, 841, 976, 1301
SduI GDGCHC 2 cut(s) 487, 1047
SfcI CTRYAG 1 cut(s) 939
SinI GGWCC 3 cut(s) 317, 331, 935
SmaI CCCGGG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 2 cut(s) 422, 1157
SmoI CTYRAG 2 cut(s) 422, 1157
SphI GCATGC 1 cut(s) 724
Sse9I AATT 8 cut(s) 62, 93, 463, 551, 1013, 1115, 1126, 1183
SspMI CTAG 2 cut(s) 480, 1339
SstI GAGCTC 1 cut(s) 1047
StyD4I CCNGG 5 cut(s) 333, 334, 839, 974, 1299
StyI CCWWGG 1 cut(s) 1035
TaaI ACNGT 2 cut(s) 748, 1000
TaiI ACGT 1 cut(s) 1272
TaqI TCGA 5 cut(s) 206, 447, 530, 1002, 1280
TasI AATT 8 cut(s) 62, 93, 463, 551, 1013, 1115, 1126, 1183
TatI WGTACW 3 cut(s) 304, 388, 962
TauI GCSGC 3 cut(s) 75, 275, 278
TfiI GAWTC 4 cut(s) 449, 527, 687, 1277
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 3 cut(s) 291, 418, 492
TseFI GTSAC 4 cut(s) 229, 923, 1225, 1265
TseI GCWGC 4 cut(s) 5, 32, 626, 1153
Tsp45I GTSAC 4 cut(s) 229, 923, 1225, 1265
TspDTI ATGAA 5 cut(s) 593, 633, 770, 940, 1128
TspGWI ACGGA 4 cut(s) 558, 699, 791, 1065
TspMI CCCGGG 1 cut(s) 334
TspRI CASTG 3 cut(s) 291, 418, 492
VpaK11BI GGWCC 3 cut(s) 317, 331, 935
XapI RAATTY 3 cut(s) 62, 463, 1115
XbaI TCTAGA 1 cut(s) 479
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 2 cut(s) 899, 1292
XmaI CCCGGG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 480, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.