RchiOBHm_Chr2g0171371

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007220
Physical Location & Seq
Forward (+)
85045191 .. 85047262
2072 bp
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UTR
Exon/CDS
Intron
PRQ53878

Sequence Viewer

Length: 630 bp
ATGGCAGCCATTATCTCCTGCCACTCCAAATTCTTAGGACCCAGCATACCCTTTAATGTTGGCACTCGCTTCCCAGTTTCCCGCAACCATTCTTCCCCAACTTCTATTCAATGTCGGATCCAGAACAACAAACAGAAAGGGAGTTCTTTTTCAGTAAAGGAGTGTGCCATTTCAATAGCTTTGACGGTGGGGCTAATAACAGGAGTTCCTGCATTGGAATTGTCCAACAATGCTTATGCAGCTACCCCAGTACTGCCTGATCTGTCTGTACTAATCTCTGGACCGCCAATAAAGGACCCTGGGGCATTGTTGAGATATGCTCTGCCTATTGATAACAAGGCTATCAGGGAGGTACAAAAGCCGCTTGAAGATATCACAGAGAGTCTCAAGATAGCTGGAGTCAAGGCACTAGATTCTACTGAGAGGAATTTGAGGCAGGCGTCTCGAGCACTGAAGCAGGGGAAGCCTTTAATTGTATCTGGATTAGCTGAGTCGAAGAAGGATCATGGTGCTGAATTGCTTGGCAAGCTGGAAGTAGGAATGGATGAGCTCCAACAGATTGTGGAGGATAAAAATAGAGATGGCATTGCTAAGAAACAGAAAGAACTACTACTCTATGTTGGAGGCTGA

Protein Analysis

209

Amino Acids

22.42

Weight (kDa)

9.24

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYP38_PsbQ-like PF21329 99 - 208 2.9e-39 Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 82, 284, 362
AclWI GGATC 3 cut(s) 112, 125, 510
AcsI RAATTY 2 cut(s) 29, 427
AcuI CTGAAG 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 3 cut(s) 252, 270, 354
AgsI TTSAA 3 cut(s) 110, 174, 368
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 6 cut(s) 179, 242, 395, 488, 529, 550
AluI AGCT 6 cut(s) 179, 242, 395, 488, 529, 550
Alw21I GWGCWC 2 cut(s) 451, 552
Alw26I GTCTC 2 cut(s) 389, 447
AlwI GGATC 3 cut(s) 112, 125, 510
Ama87I CYCGRG 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 5, 239
ApoI RAATTY 2 cut(s) 29, 427
AspS9I GGNCC 3 cut(s) 38, 281, 295
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 3 cut(s) 38, 281, 295
BamHI GGATCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 552
Bbv12I GWGCWC 2 cut(s) 451, 552
BbvI GCAGC 2 cut(s) 17, 251
BccI CCATC 1 cut(s) 575
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 2 cut(s) 389, 447
BfaI CTAG 1 cut(s) 410
BisI GCNGC 3 cut(s) 6, 240, 362
BlsI GCNGC 3 cut(s) 7, 241, 363
BmcAI AGTACT 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 3 cut(s) 38, 281, 295
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 3 cut(s) 38, 281, 295
BmiI GGNNCC 3 cut(s) 40, 119, 297
BmrFI CCNGG 1 cut(s) 300
BmrI ACTGGG 2 cut(s) 68, 242
BmuI ACTGGG 2 cut(s) 68, 242
BplI GAGNNNNNCTC 2 cut(s) 304, 336
BpmI CTGGAG 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 298, 299
Bse1I ACTGG 2 cut(s) 74, 248
Bse3DI GCAATG 1 cut(s) 585
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 298, 299
BseGI GGATG 1 cut(s) 550
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 2 cut(s) 411, 480
BseNI ACTGG 2 cut(s) 74, 248
BseXI GCAGC 2 cut(s) 17, 251
BseYI CCCAGC 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 451, 552
BsiHKCI CYCGRG 1 cut(s) 444
BsmAI GTCTC 2 cut(s) 389, 447
BsmBI CGTCTC 1 cut(s) 447
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 451, 552
Bsp143I GATC 3 cut(s) 117, 259, 502
BspACI CCGC 3 cut(s) 82, 284, 362
BspCNI CTCAG 2 cut(s) 412, 481
BspLI GGNNCC 3 cut(s) 40, 119, 297
BspPI GGATC 3 cut(s) 112, 125, 510
BsrDI GCAATG 1 cut(s) 585
BsrI ACTGG 2 cut(s) 74, 248
BssECI CCNNGG 2 cut(s) 298, 299
BssMI GATC 3 cut(s) 117, 259, 502
BssNI GRCGYC 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 438, 527
BstDEI CTNAG 4 cut(s) 34, 420, 489, 591
BstF5I GGATG 1 cut(s) 550
BstKTI GATC 3 cut(s) 120, 262, 505
BstMAI GTCTC 2 cut(s) 389, 447
BstMBI GATC 3 cut(s) 117, 259, 502
BstMWI GCNNNNNNNGC 4 cut(s) 239, 446, 463, 526
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 17, 251
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 438, 527
Cfr13I GGNCC 3 cut(s) 38, 281, 295
CseI GACGC 1 cut(s) 429
Csp6I GTAC 3 cut(s) 251, 269, 353
CviAII CATG 1 cut(s) 506
CviQI GTAC 3 cut(s) 251, 269, 353
DdeI CTNAG 4 cut(s) 34, 420, 489, 591
DpnI GATC 3 cut(s) 119, 261, 504
DpnII GATC 3 cut(s) 117, 259, 502
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 552
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 3 cut(s) 38, 281, 295
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 2 cut(s) 38, 295
EcoRII CCWGG 1 cut(s) 298
EcoRV GATATC 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 552
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 1 cut(s) 509
FaiI YATR 5 cut(s) 47, 237, 318, 507, 618
FatI CATG 1 cut(s) 505
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 3 cut(s) 6, 240, 362
FokI GGATG 1 cut(s) 557
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 3 cut(s) 6, 240, 362
FspBI CTAG 1 cut(s) 410
GluI GCNGC 3 cut(s) 6, 240, 362
GsaI CCCAGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 417
HgaI GACGC 1 cut(s) 429
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 1 cut(s) 509
HinfI GANTC 4 cut(s) 382, 399, 413, 491
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 5 cut(s) 121, 279, 388, 444, 480
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 212, 239
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 446, 463, 526
HpyF3I CTNAG 4 cut(s) 34, 420, 489, 591
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 1 cut(s) 509
Kzo9I GATC 3 cut(s) 117, 259, 502
LmnI GCTCC 1 cut(s) 555
Lsp1109I GCAGC 2 cut(s) 17, 251
MaeI CTAG 1 cut(s) 410
MalI GATC 3 cut(s) 119, 261, 504
MboI GATC 3 cut(s) 117, 259, 502
MboII GAAGA 3 cut(s) 84, 380, 508
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 2 cut(s) 451, 552
MluCI AATT 5 cut(s) 29, 218, 427, 471, 515
MlyI GAGTC 3 cut(s) 391, 408, 500
MmeI TCCRAC 4 cut(s) 95, 249, 577, 601
MnlI CCTC 5 cut(s) 343, 417, 426, 559, 617
MseI TTAA 2 cut(s) 54, 470
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 4 cut(s) 239, 446, 463, 526
NdeII GATC 3 cut(s) 117, 259, 502
NlaIII CATG 1 cut(s) 509
NlaIV GGNNCC 3 cut(s) 40, 119, 297
PaeR7I CTCGAG 1 cut(s) 444
PasI CCCWGGG 1 cut(s) 299
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 3 cut(s) 7, 241, 363
PleI GAGTC 3 cut(s) 390, 407, 499
PpsI GAGTC 3 cut(s) 390, 407, 499
PpuMI RGGWCCY 2 cut(s) 38, 295
Psp124BI GAGCTC 1 cut(s) 552
Psp5II RGGWCCY 2 cut(s) 38, 295
Psp6I CCWGG 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 3 cut(s) 40, 119, 297
PspPI GGNCC 3 cut(s) 38, 281, 295
PspPPI RGGWCCY 2 cut(s) 38, 295
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 3 cut(s) 252, 270, 354
RsaNI GTAC 3 cut(s) 251, 269, 353
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 2 cut(s) 54, 470
SatI GCNGC 3 cut(s) 6, 240, 362
Sau3AI GATC 3 cut(s) 117, 259, 502
Sau96I GGNCC 3 cut(s) 38, 281, 295
ScaI AGTACT 1 cut(s) 252
SchI GAGTC 3 cut(s) 391, 408, 500
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 2 cut(s) 451, 552
SetI ASST 7 cut(s) 181, 244, 354, 397, 490, 531, 552
Sfr274I CTCGAG 1 cut(s) 444
SinI GGWCC 3 cut(s) 38, 281, 295
SlaI CTCGAG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 386, 444
SmoI CTYRAG 2 cut(s) 386, 444
Sse9I AATT 5 cut(s) 29, 218, 427, 471, 515
SsiI CCGC 3 cut(s) 82, 284, 362
SspMI CTAG 1 cut(s) 410
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 445, 494
TasI AATT 5 cut(s) 29, 218, 427, 471, 515
TatI WGTACW 2 cut(s) 250, 268
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 54, 470
Tru9I TTAA 2 cut(s) 54, 470
TscAI CASTG 1 cut(s) 456
TseI GCWGC 2 cut(s) 5, 239
TspRI CASTG 1 cut(s) 456
VpaK11BI GGWCC 3 cut(s) 38, 281, 295
XapI RAATTY 2 cut(s) 29, 427
XhoI CTCGAG 1 cut(s) 444
XspI CTAG 1 cut(s) 410
ZrmI AGTACT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.