Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Forward (+)

79831921 .. 79834874

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCAGCCATTATCTCCTGCCACTCCAAATTCTTAGGACCCAGCATACCCTTTAATGTTGGCACTCGCTTCCCAGTTTCCCGCAACCATTCTTCCCCAACTTCTATTCAATGTCGGATCCAGAACAACAAACAGAAAGGGTGTTCTTTTTCAGTAAAGGAGTGTGCCATTTCAATAGCTTTGACGGTGGGGCTAATAACAGGAGTTCCTGCATTGGAATTGTCCAACAATGCTTATGCAGCTACCCCAGTACTGCCTGATCTGGCTGTACTGATCTCTGGACCGCCAATAAAGGACCCTGGGGCATTGTTGAGATATGCTCTGCCTATTGATAACAAGGCTATCAGGGAGGTACAAAAGCCGCTTGAAGATATCACAGAGAGTCTCAAGATAGCTGGAGTCAAGGCACTAGATTCAACTGAGAGGAATTTGAGGCAGGCGTCTCGAGCACTGAAGCAGGGGAAGCCTTTAATTGTATCTGGATTAGCTGAGTCGAAGAAGGATCATGGTGCTGAATTGCTTGGCAAGCTAGAAGTAGGAATGGATGAGCTCCAACAGATTGTGGAGGATAAAAATAGAGATGGCATTGCTAAGAAACAGAAAGAACTACTACTCTATGTTGGAGGTGTTGAAGAGGACATGGTGGATGGATTCCCTTATGAAGTGCCCGAAGAATACCAAAGCATGCCTCTATTGAAGGGGAGAGCAACTGTGGATATGAAGGTCAAGGTTAAGGATAATCCTAACCTTACTGACTGTGTCTTTCGTATTGTCCTCGATGGTTACAATGCTCCTGTAACTTCTGGAAACTTTGTGGACTTGGTGGAAAGACACTTTTATGATGGCATGGAAATCCAAAGAGCGGACGGATTTGTTGTACAAACTGGTGATCCTGAAGGACCTGCAGAGGGTTTCATTGATCCAAGTACTGAGAAGACCAGGACAATACCTTTAGAAATCTCTGTAGTTGGAGAGAAAGCACCCTTTTATGGAGCAACTTTGGAAGAACTGGGGCTATACAAGGCTCAGACAAAGCTTCCATTTAACGCATTTGGAACAATGGCAATGGCCCGAGATGAATTTGAGAACAATTCTGCTTCAAGCCAGATATTTTGGTTACTAAAGGAAAGTGAACTAACTCCCAGTAACGCCAATATATTGGATGGTCGGTATGCAGTGTTCGGATACATTACAGAAAATGAGGACTTTTTGGCAGATGTCAAGGTTGGTGATGTTATCGAGTCTATCCAAGTTGTTTCTGGCCTGGAAAATCTAGCGAATCCAAGCTACAAGATTGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

434

Amino Acids

47.27

Weight (kDa)

4.98

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	99 - 215	1.1e-42	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	255 - 412	2.4e-21	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	910
AccBSI	CCGCTC	1 cut(s)	863
AciI	CCGC	4 cut(s)	82, 284, 362, 863
AclWI	GGATC	5 cut(s)	112, 125, 510, 884, 914
AcsI	RAATTY	3 cut(s)	29, 427, 1079
AcuI	CTGAAG	2 cut(s)	473, 915
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	5 cut(s)	252, 270, 354, 879, 928
AfiI	CCNNNNNNNGG	3 cut(s)	862, 908, 989
AgsI	TTSAA	7 cut(s)	110, 174, 368, 417, 632, 697, 1101
AjnI	CCWGG	3 cut(s)	298, 938, 1263
AluBI	AGCT	8 cut(s)	179, 242, 395, 488, 529, 550, 1036, 1287
AluI	AGCT	8 cut(s)	179, 242, 395, 488, 529, 550, 1036, 1287
Alw21I	GWGCWC	2 cut(s)	451, 552
Alw26I	GTCTC	2 cut(s)	389, 447
AlwI	GGATC	5 cut(s)	112, 125, 510, 884, 914
Ama87I	CYCGRG	2 cut(s)	444, 1071
AoxI	GGCC	2 cut(s)	1068, 1261
ApeKI	GCWGC	2 cut(s)	5, 239
ApoI	RAATTY	3 cut(s)	29, 427, 1079
AspS9I	GGNCC	5 cut(s)	38, 281, 295, 899, 1069
AsuHPI	GGTGA	2 cut(s)	899, 1241
AvaI	CYCGRG	2 cut(s)	444, 1071
AvaII	GGWCC	4 cut(s)	38, 281, 295, 899
BaeGI	GKGCMC	1 cut(s)	669
BamHI	GGATCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	941
Bbv12I	GWGCWC	2 cut(s)	451, 552
BbvI	GCAGC	2 cut(s)	17, 251
BccI	CCATC	5 cut(s)	575, 641, 773, 836, 1157
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	3 cut(s)	300, 940, 1265
BciVI	GTATCC	1 cut(s)	1178
BcoDI	GTCTC	2 cut(s)	389, 447
BfaI	CTAG	4 cut(s)	410, 530, 1274, 1303
BfmI	CTRYAG	2 cut(s)	903, 963
BfuAI	ACCTGC	1 cut(s)	910
BfuI	GTATCC	1 cut(s)	1178
BisI	GCNGC	3 cut(s)	6, 240, 362
BlsI	GCNGC	3 cut(s)	7, 241, 363
BmcAI	AGTACT	2 cut(s)	252, 928
Bme1390I	CCNGG	3 cut(s)	300, 940, 1265
Bme18I	GGWCC	4 cut(s)	38, 281, 295, 899
BmeT110I	CYCGRG	2 cut(s)	444, 1071
BmgT120I	GGNCC	5 cut(s)	38, 281, 295, 899, 1069
BmiI	GGNNCC	3 cut(s)	40, 119, 297
BmrFI	CCNGG	3 cut(s)	300, 940, 1265
BmrI	ACTGGG	4 cut(s)	68, 242, 1019, 1137
BmuI	ACTGGG	4 cut(s)	68, 242, 1019, 1137
BpiI	GAAGAC	1 cut(s)	941
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	298, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	862, 908, 989
Bse1I	ACTGG	5 cut(s)	74, 248, 889, 1014, 1143
Bse3DI	GCAATG	2 cut(s)	585, 1071
BseBI	CCWGG	3 cut(s)	300, 940, 1265
BseDI	CCNNGG	2 cut(s)	298, 299
BseGI	GGATG	3 cut(s)	550, 652, 1168
BseLI	CCNNNNNNNGG	3 cut(s)	862, 908, 989
BseMI	GCAATG	2 cut(s)	585, 1071
BseMII	CTCAG	4 cut(s)	411, 480, 921, 1040
BseNI	ACTGG	5 cut(s)	74, 248, 889, 1014, 1143
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	17, 251
BseYI	CCCAGC	1 cut(s)	41
BshFI	GGCC	2 cut(s)	1070, 1263
BsiHKAI	GWGCWC	2 cut(s)	451, 552
BsiHKCI	CYCGRG	2 cut(s)	444, 1071
BslI	CCNNNNNNNGG	3 cut(s)	862, 908, 989
BsmAI	GTCTC	2 cut(s)	389, 447
BsmBI	CGTCTC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	1070, 1263
BsoBI	CYCGRG	2 cut(s)	444, 1071
Bsp1286I	GDGCHC	3 cut(s)	451, 552, 669
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	6 cut(s)	117, 259, 273, 502, 889, 919
BspACI	CCGC	4 cut(s)	82, 284, 362, 863
BspANI	GGCC	2 cut(s)	1070, 1263
BspCNI	CTCAG	4 cut(s)	412, 481, 922, 1039
BspLI	GGNNCC	3 cut(s)	40, 119, 297
BspMAI	CTGCAG	1 cut(s)	907
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	5 cut(s)	112, 125, 510, 884, 914
BsrBI	CCGCTC	1 cut(s)	863
BsrDI	GCAATG	2 cut(s)	585, 1071
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	5 cut(s)	74, 248, 889, 1014, 1143
BssECI	CCNNGG	2 cut(s)	298, 299
BssMI	GATC	6 cut(s)	117, 259, 273, 502, 889, 919
BssNI	GRCGYC	1 cut(s)	440
Bst2UI	CCWGG	3 cut(s)	300, 940, 1265
Bst4CI	ACNGT	3 cut(s)	187, 712, 758
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	877
BstC8I	GCNNGC	4 cut(s)	438, 527, 686, 1300
BstDEI	CTNAG	6 cut(s)	34, 420, 489, 591, 930, 1026
BstF5I	GGATG	3 cut(s)	550, 652, 1168
BstKTI	GATC	6 cut(s)	120, 262, 276, 505, 892, 922
BstMAI	GTCTC	2 cut(s)	389, 447
BstMBI	GATC	6 cut(s)	117, 259, 273, 502, 889, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 446, 463, 526
BstNI	CCWGG	3 cut(s)	300, 940, 1265
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	3 cut(s)	298, 938, 1263
BstSFI	CTRYAG	2 cut(s)	903, 963
BstSLI	GKGCMC	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	17, 251
BstV2I	GAAGAC	1 cut(s)	941
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	1159
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	1178
BsuRI	GGCC	2 cut(s)	1070, 1263
BtsCI	GGATG	3 cut(s)	550, 652, 1168
BtsI	GCAGTG	1 cut(s)	1182
BtsIMutI	CAGTG	2 cut(s)	449, 1182
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	4 cut(s)	438, 527, 686, 1300
Cfr13I	GGNCC	5 cut(s)	38, 281, 295, 899, 1069
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	5 cut(s)	251, 269, 353, 878, 927
CviAII	CATG	4 cut(s)	506, 640, 685, 847
CviQI	GTAC	5 cut(s)	251, 269, 353, 878, 927
DdeI	CTNAG	6 cut(s)	34, 420, 489, 591, 930, 1026
DpnI	GATC	6 cut(s)	119, 261, 275, 504, 891, 921
DpnII	GATC	6 cut(s)	117, 259, 273, 502, 889, 919
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	4 cut(s)	38, 281, 295, 899
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	2 cut(s)	473, 915
Eco88I	CYCGRG	2 cut(s)	444, 1071
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	3 cut(s)	38, 295, 899
EcoRII	CCWGG	3 cut(s)	298, 938, 1263
EcoRV	GATATC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	552
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	4 cut(s)	509, 643, 688, 850
FatI	CATG	4 cut(s)	505, 639, 684, 846
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	6, 240, 362
FokI	GGATG	3 cut(s)	557, 659, 1175
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	3 cut(s)	6, 240, 362
FspBI	CTAG	4 cut(s)	410, 530, 1274, 1303
GluI	GCNGC	3 cut(s)	6, 240, 362
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	1070, 1263
HgaI	GACGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	4 cut(s)	509, 643, 688, 850
HindIII	AAGCTT	1 cut(s)	1034
HinfI	GANTC	7 cut(s)	382, 399, 413, 491, 651, 1241, 1279
HphI	GGTGA	2 cut(s)	899, 1241
Hpy166II	GTNNAC	2 cut(s)	817, 1133
Hpy188I	TCNGA	3 cut(s)	117, 1029, 1184
Hpy188III	TCNNGA	7 cut(s)	121, 279, 388, 444, 480, 804, 893
Hpy8I	GTNNAC	2 cut(s)	817, 1133
HpyAV	CCTTC	4 cut(s)	493, 691, 715, 890
HpyCH4III	ACNGT	3 cut(s)	187, 712, 758
HpyCH4V	TGCA	4 cut(s)	212, 239, 905, 1175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 446, 463, 526
HpyF3I	CTNAG	6 cut(s)	34, 420, 489, 591, 930, 1026
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	4 cut(s)	509, 643, 688, 850
Kzo9I	GATC	6 cut(s)	117, 259, 273, 502, 889, 919
LmnI	GCTCC	3 cut(s)	555, 796, 992
Lsp1109I	GCAGC	2 cut(s)	17, 251
MaeI	CTAG	4 cut(s)	410, 530, 1274, 1303
MaeIII	GTNAC	4 cut(s)	782, 796, 1116, 1145
MalI	GATC	6 cut(s)	119, 261, 275, 504, 891, 921
MbiI	CCGCTC	1 cut(s)	863
MboI	GATC	6 cut(s)	117, 259, 273, 502, 889, 919
MboII	GAAGA	7 cut(s)	84, 380, 508, 644, 683, 946, 1016
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	3 cut(s)	451, 552, 669
MluCI	AATT	7 cut(s)	29, 218, 427, 471, 515, 1079, 1090
MlyI	GAGTC	4 cut(s)	391, 408, 500, 1250
MmeI	TCCRAC	5 cut(s)	95, 249, 577, 601, 949
MseI	TTAA	4 cut(s)	54, 470, 732, 1044
MslI	CAYNNNNRTG	1 cut(s)	837
MspR9I	CCNGG	3 cut(s)	300, 940, 1265
MvaI	CCWGG	3 cut(s)	300, 940, 1265
MwoI	GCNNNNNNNGC	4 cut(s)	239, 446, 463, 526
NdeII	GATC	6 cut(s)	117, 259, 273, 502, 889, 919
NlaIII	CATG	4 cut(s)	509, 643, 688, 850
NlaIV	GGNNCC	3 cut(s)	40, 119, 297
NspI	RCATGY	1 cut(s)	688
PaeI	GCATGC	1 cut(s)	688
PaeR7I	CTCGAG	1 cut(s)	444
PasI	CCCWGGG	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	413, 651, 1279
PflFI	GACNNNGTC	1 cut(s)	758
PkrI	GCNGC	3 cut(s)	7, 241, 363
PleI	GAGTC	4 cut(s)	390, 407, 499, 1249
PpsI	GAGTC	4 cut(s)	390, 407, 499, 1249
PpuMI	RGGWCCY	3 cut(s)	38, 295, 899
Psp124BI	GAGCTC	1 cut(s)	552
Psp5II	RGGWCCY	3 cut(s)	38, 295, 899
Psp6I	CCWGG	3 cut(s)	298, 938, 1263
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	298, 938, 1263
PspN4I	GGNNCC	3 cut(s)	40, 119, 297
PspPI	GGNCC	5 cut(s)	38, 281, 295, 899, 1069
PspPPI	RGGWCCY	3 cut(s)	38, 295, 899
PsrI	GAACNNNNNNTAC	2 cut(s)	1163, 1195
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	758
RsaI	GTAC	5 cut(s)	252, 270, 354, 879, 928
RsaNI	GTAC	5 cut(s)	251, 269, 353, 878, 927
RseI	CAYNNNNRTG	1 cut(s)	837
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	54, 470, 732, 1044
SatI	GCNGC	3 cut(s)	6, 240, 362
Sau3AI	GATC	6 cut(s)	117, 259, 273, 502, 889, 919
Sau96I	GGNCC	5 cut(s)	38, 281, 295, 899, 1069
ScaI	AGTACT	2 cut(s)	252, 928
SchI	GAGTC	4 cut(s)	391, 408, 500, 1250
ScrFI	CCNGG	3 cut(s)	300, 940, 1265
SduI	GDGCHC	3 cut(s)	451, 552, 669
SfcI	CTRYAG	2 cut(s)	903, 963
Sfr274I	CTCGAG	1 cut(s)	444
SinI	GGWCC	4 cut(s)	38, 281, 295, 899
SlaI	CTCGAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	2 cut(s)	386, 444
SmoI	CTYRAG	2 cut(s)	386, 444
SphI	GCATGC	1 cut(s)	688
Sse9I	AATT	7 cut(s)	29, 218, 427, 471, 515, 1079, 1090
SsiI	CCGC	4 cut(s)	82, 284, 362, 863
SspMI	CTAG	4 cut(s)	410, 530, 1274, 1303
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	298, 938, 1263
TaaI	ACNGT	3 cut(s)	187, 712, 758
TaqI	TCGA	4 cut(s)	445, 494, 777, 1239
TasI	AATT	7 cut(s)	29, 218, 427, 471, 515, 1079, 1090
TatI	WGTACW	4 cut(s)	250, 268, 877, 926
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	413, 651, 1279
Tru1I	TTAA	4 cut(s)	54, 470, 732, 1044
Tru9I	TTAA	4 cut(s)	54, 470, 732, 1044
TscAI	CASTG	2 cut(s)	456, 1182
TseI	GCWGC	2 cut(s)	5, 239
TspDTI	ATGAA	4 cut(s)	675, 734, 904, 1092
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	2 cut(s)	456, 1182
Tth111I	GACNNNGTC	1 cut(s)	758
VpaK11BI	GGWCC	4 cut(s)	38, 281, 295, 899
XapI	RAATTY	3 cut(s)	29, 427, 1079
XceI	RCATGY	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1256
XhoI	CTCGAG	1 cut(s)	444
XspI	CTAG	4 cut(s)	410, 530, 1274, 1303
ZrmI	AGTACT	2 cut(s)	252, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.