Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Reverse (-)

3640071 .. 3643337

Gene Structure 3267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCAGCCATTATCTCCTGCCACTCCAAATTCTTAGGAGCCAGCATACCCTTTAATGTTGGCACTCGCTTCCCAGTTTCCCGCAACCTTTCTTCCCCAACTTCTTTTCAGTGTCGGATCCAGAACAACAAACAGCAGAAAGGGAGTTCTTTTTCAGTAAAGGAGTGTGCCATTTCAATAGCTTTGACGGTGGGGCTAATAACAGGAGTTCCTGCATTGGAATTGTCCAACAATGCTTATGCAGCTACCCCAGTACTGCCTGATCTGGCTGTACTGATCTCTGGACCGCCAATAAAGGACCCTGGGGCATTGTTGAGATATGCTCTGCCTATTGATAACAAGGCTATCAGGGAGGTACAAAAGCCGCTTGAAGATATCACAGAGAGTCTCAAGATAGCTGGAGTCAAGGCACTAGATTCAACTGAGAGGAATTTGAGGCAGGCGTCTCGAGCACTGAAGCAGGGGAAGCCTTTAATTGTATCTGGATTAGCTGAATCGAAGAAGGATCATGGTGCTGAATTGCTTGGCAAGCTGGAAGTAGGAATGGATGAGCTCCAACATATTGTGGAGGATAAAAATAGAGATGGAATTGCTAAGAAACAGAAAGAACTACTACTCTATGTCGGAGGTGTTGAAGAGGACATGGTGGATGGATTCCCTTATGAAGTGCCCGAAGAATACCAAAGCATGCCTCTATTGAAGGGGAGAGCAACTGTGGATATGAAGGTCAAGGTTAAGGATAATCCTAACCTTACTGACTGTGTCTTTCGTATTGTCCTCGATGGTTACAATGCTCCTGTAACTTCTGGAAACTTTGTGGACTTGGTGGAAAGACACTTTTATGATGGCATGGAAATCCAAAGAGCGGACGGATTTGTTGTACAAACTGGTGATCCTGAAGGACCTGCAGAGGGTTTCATTGATCCAAGTACTGAGAAGACCAGGACAATACCTTTAGAAATCTCTGTAGTTGGAGAGAAAGCACCCTTTTATGGAGCAACTTTGGAAGAACTGGGGCTATACAAGGCTCAGACAAAGCTTCCATTTAACGCATTTGGAACAATGGCTATGGCCCGAGATGAATTTGAGAACAATTCTGCTTCAAGCCAGATATTTTGGTTACTAAAGGAAAGTGAACTAACTCCCAGTAACGCCAATATATTGGATGGTCGGTATGCAGTGTTCGGATACATTACAGAAAATGAGGACTTTTTGGCAGATGTCAAGGTTGGTGATGTTATCGAGTCTATCCAAGTTGTTTCTGGCCTGGAAAATCTAGCGAATCCAAGCTACAAGATTGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

435

Amino Acids

47.37

Weight (kDa)

4.98

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	100 - 216	1.6e-42	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	256 - 413	2.4e-21	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	913
AccBSI	CCGCTC	1 cut(s)	866
AciI	CCGC	4 cut(s)	82, 287, 365, 866
AclWI	GGATC	5 cut(s)	112, 125, 513, 887, 917
AcsI	RAATTY	3 cut(s)	29, 430, 1082
AcuI	CTGAAG	2 cut(s)	476, 918
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	5 cut(s)	255, 273, 357, 882, 931
AfiI	CCNNNNNNNGG	3 cut(s)	865, 911, 992
AgsI	TTSAA	6 cut(s)	177, 371, 420, 635, 700, 1104
AjnI	CCWGG	3 cut(s)	301, 941, 1266
AluBI	AGCT	8 cut(s)	182, 245, 398, 491, 532, 553, 1039, 1290
AluI	AGCT	8 cut(s)	182, 245, 398, 491, 532, 553, 1039, 1290
Alw21I	GWGCWC	2 cut(s)	454, 555
Alw26I	GTCTC	2 cut(s)	392, 450
AlwI	GGATC	5 cut(s)	112, 125, 513, 887, 917
Ama87I	CYCGRG	2 cut(s)	447, 1074
AoxI	GGCC	2 cut(s)	1071, 1264
ApeKI	GCWGC	2 cut(s)	5, 242
ApoI	RAATTY	3 cut(s)	29, 430, 1082
AspS9I	GGNCC	4 cut(s)	284, 298, 902, 1072
AsuHPI	GGTGA	2 cut(s)	902, 1244
AvaI	CYCGRG	2 cut(s)	447, 1074
AvaII	GGWCC	3 cut(s)	284, 298, 902
BaeGI	GKGCMC	1 cut(s)	672
BamHI	GGATCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	2 cut(s)	454, 555
BbvI	GCAGC	2 cut(s)	17, 254
BccI	CCATC	5 cut(s)	578, 644, 776, 839, 1160
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	3 cut(s)	303, 943, 1268
BciVI	GTATCC	1 cut(s)	1181
BcoDI	GTCTC	2 cut(s)	392, 450
BfaI	CTAG	3 cut(s)	413, 1277, 1306
BfmI	CTRYAG	2 cut(s)	906, 966
BfuAI	ACCTGC	1 cut(s)	913
BfuI	GTATCC	1 cut(s)	1181
BisI	GCNGC	3 cut(s)	6, 243, 365
BlsI	GCNGC	3 cut(s)	7, 244, 366
BmcAI	AGTACT	2 cut(s)	255, 931
Bme1390I	CCNGG	3 cut(s)	303, 943, 1268
Bme18I	GGWCC	3 cut(s)	284, 298, 902
BmeT110I	CYCGRG	2 cut(s)	447, 1074
BmgT120I	GGNCC	4 cut(s)	284, 298, 902, 1072
BmiI	GGNNCC	3 cut(s)	40, 119, 300
BmrFI	CCNGG	3 cut(s)	303, 943, 1268
BmrI	ACTGGG	4 cut(s)	68, 245, 1022, 1140
BmuI	ACTGGG	4 cut(s)	68, 245, 1022, 1140
BpiI	GAAGAC	1 cut(s)	944
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	301, 302
Bsc4I	CCNNNNNNNGG	3 cut(s)	865, 911, 992
Bse1I	ACTGG	5 cut(s)	74, 251, 892, 1017, 1146
BseBI	CCWGG	3 cut(s)	303, 943, 1268
BseDI	CCNNGG	2 cut(s)	301, 302
BseGI	GGATG	3 cut(s)	553, 655, 1171
BseLI	CCNNNNNNNGG	3 cut(s)	865, 911, 992
BseMII	CTCAG	3 cut(s)	414, 924, 1043
BseNI	ACTGG	5 cut(s)	74, 251, 892, 1017, 1146
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	2 cut(s)	17, 254
BshFI	GGCC	2 cut(s)	1073, 1266
BsiHKAI	GWGCWC	2 cut(s)	454, 555
BsiHKCI	CYCGRG	2 cut(s)	447, 1074
BslI	CCNNNNNNNGG	3 cut(s)	865, 911, 992
BsmAI	GTCTC	2 cut(s)	392, 450
BsmBI	CGTCTC	1 cut(s)	450
BsnI	GGCC	2 cut(s)	1073, 1266
BsoBI	CYCGRG	2 cut(s)	447, 1074
Bsp1286I	GDGCHC	3 cut(s)	454, 555, 672
Bsp1407I	TGTACA	1 cut(s)	880
Bsp143I	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
BspACI	CCGC	4 cut(s)	82, 287, 365, 866
BspANI	GGCC	2 cut(s)	1073, 1266
BspCNI	CTCAG	3 cut(s)	415, 925, 1042
BspLI	GGNNCC	3 cut(s)	40, 119, 300
BspMAI	CTGCAG	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	913
BspPI	GGATC	5 cut(s)	112, 125, 513, 887, 917
BsrBI	CCGCTC	1 cut(s)	866
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	5 cut(s)	74, 251, 892, 1017, 1146
BssECI	CCNNGG	2 cut(s)	301, 302
BssMI	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
BssNI	GRCGYC	1 cut(s)	443
Bst2UI	CCWGG	3 cut(s)	303, 943, 1268
Bst4CI	ACNGT	3 cut(s)	190, 715, 761
Bst6I	CTCTTC	1 cut(s)	630
BstACI	GRCGYC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	880
BstC8I	GCNNGC	5 cut(s)	43, 441, 530, 689, 1303
BstDEI	CTNAG	5 cut(s)	34, 423, 594, 933, 1029
BstF5I	GGATG	3 cut(s)	553, 655, 1171
BstKTI	GATC	6 cut(s)	120, 265, 279, 508, 895, 925
BstMAI	GTCTC	2 cut(s)	392, 450
BstMBI	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 449, 466, 529
BstNI	CCWGG	3 cut(s)	303, 943, 1268
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	3 cut(s)	301, 941, 1266
BstSFI	CTRYAG	2 cut(s)	906, 966
BstSLI	GKGCMC	1 cut(s)	672
BstV1I	GCAGC	2 cut(s)	17, 254
BstV2I	GAAGAC	1 cut(s)	944
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	1162
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	1181
BsuRI	GGCC	2 cut(s)	1073, 1266
BtsCI	GGATG	3 cut(s)	553, 655, 1171
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	3 cut(s)	116, 452, 1185
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	5 cut(s)	43, 441, 530, 689, 1303
Cfr13I	GGNCC	4 cut(s)	284, 298, 902, 1072
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	5 cut(s)	254, 272, 356, 881, 930
CviAII	CATG	4 cut(s)	509, 643, 688, 850
CviQI	GTAC	5 cut(s)	254, 272, 356, 881, 930
DdeI	CTNAG	5 cut(s)	34, 423, 594, 933, 1029
DpnI	GATC	6 cut(s)	119, 264, 278, 507, 894, 924
DpnII	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	284, 298, 902
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	476, 918
Eco88I	CYCGRG	2 cut(s)	447, 1074
EcoICRI	GAGCTC	1 cut(s)	553
EcoO109I	RGGNCCY	2 cut(s)	298, 902
EcoRII	CCWGG	3 cut(s)	301, 941, 1266
EcoRV	GATATC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	4 cut(s)	512, 646, 691, 853
FatI	CATG	4 cut(s)	508, 642, 687, 849
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	6, 243, 365
FokI	GGATG	3 cut(s)	560, 662, 1178
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	3 cut(s)	6, 243, 365
FspBI	CTAG	3 cut(s)	413, 1277, 1306
GluI	GCNGC	3 cut(s)	6, 243, 365
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	1073, 1266
HgaI	GACGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	4 cut(s)	512, 646, 691, 853
HindIII	AAGCTT	1 cut(s)	1037
HinfI	GANTC	7 cut(s)	385, 402, 416, 494, 654, 1244, 1282
HphI	GGTGA	2 cut(s)	902, 1244
Hpy166II	GTNNAC	2 cut(s)	820, 1136
Hpy188I	TCNGA	4 cut(s)	117, 626, 1032, 1187
Hpy188III	TCNNGA	7 cut(s)	121, 282, 391, 447, 483, 807, 896
Hpy8I	GTNNAC	2 cut(s)	820, 1136
HpyAV	CCTTC	4 cut(s)	496, 694, 718, 893
HpyCH4III	ACNGT	3 cut(s)	190, 715, 761
HpyCH4V	TGCA	4 cut(s)	215, 242, 908, 1178
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 449, 466, 529
HpyF3I	CTNAG	5 cut(s)	34, 423, 594, 933, 1029
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	4 cut(s)	512, 646, 691, 853
Kzo9I	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
LmnI	GCTCC	4 cut(s)	38, 558, 799, 995
Lsp1109I	GCAGC	2 cut(s)	17, 254
MaeI	CTAG	3 cut(s)	413, 1277, 1306
MaeIII	GTNAC	4 cut(s)	785, 799, 1119, 1148
MalI	GATC	6 cut(s)	119, 264, 278, 507, 894, 924
MbiI	CCGCTC	1 cut(s)	866
MboI	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
MboII	GAAGA	7 cut(s)	84, 383, 511, 647, 686, 949, 1019
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	3 cut(s)	454, 555, 672
MluCI	AATT	8 cut(s)	29, 221, 430, 474, 518, 588, 1082, 1093
MlyI	GAGTC	3 cut(s)	394, 411, 1253
MmeI	TCCRAC	5 cut(s)	95, 252, 580, 604, 952
MseI	TTAA	4 cut(s)	54, 473, 735, 1047
MslI	CAYNNNNRTG	1 cut(s)	840
MspR9I	CCNGG	3 cut(s)	303, 943, 1268
MvaI	CCWGG	3 cut(s)	303, 943, 1268
MwoI	GCNNNNNNNGC	4 cut(s)	242, 449, 466, 529
NdeII	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
NlaIII	CATG	4 cut(s)	512, 646, 691, 853
NlaIV	GGNNCC	3 cut(s)	40, 119, 300
NspI	RCATGY	1 cut(s)	691
PaeI	GCATGC	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	447
PasI	CCCWGGG	1 cut(s)	302
PfeI	GAWTC	4 cut(s)	416, 494, 654, 1282
PflFI	GACNNNGTC	1 cut(s)	761
PkrI	GCNGC	3 cut(s)	7, 244, 366
PleI	GAGTC	3 cut(s)	393, 410, 1252
PpsI	GAGTC	3 cut(s)	393, 410, 1252
PpuMI	RGGWCCY	2 cut(s)	298, 902
Psp124BI	GAGCTC	1 cut(s)	555
Psp5II	RGGWCCY	2 cut(s)	298, 902
Psp6I	CCWGG	3 cut(s)	301, 941, 1266
PspGI	CCWGG	3 cut(s)	301, 941, 1266
PspN4I	GGNNCC	3 cut(s)	40, 119, 300
PspPI	GGNCC	4 cut(s)	284, 298, 902, 1072
PspPPI	RGGWCCY	2 cut(s)	298, 902
PsrI	GAACNNNNNNTAC	2 cut(s)	1166, 1198
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	761
RsaI	GTAC	5 cut(s)	255, 273, 357, 882, 931
RsaNI	GTAC	5 cut(s)	254, 272, 356, 881, 930
RseI	CAYNNNNRTG	1 cut(s)	840
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	54, 473, 735, 1047
SatI	GCNGC	3 cut(s)	6, 243, 365
Sau3AI	GATC	6 cut(s)	117, 262, 276, 505, 892, 922
Sau96I	GGNCC	4 cut(s)	284, 298, 902, 1072
ScaI	AGTACT	2 cut(s)	255, 931
SchI	GAGTC	3 cut(s)	394, 411, 1253
ScrFI	CCNGG	3 cut(s)	303, 943, 1268
SduI	GDGCHC	3 cut(s)	454, 555, 672
SfcI	CTRYAG	2 cut(s)	906, 966
Sfr274I	CTCGAG	1 cut(s)	447
SinI	GGWCC	3 cut(s)	284, 298, 902
SlaI	CTCGAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	2 cut(s)	389, 447
SmoI	CTYRAG	2 cut(s)	389, 447
SphI	GCATGC	1 cut(s)	691
Sse9I	AATT	8 cut(s)	29, 221, 430, 474, 518, 588, 1082, 1093
SsiI	CCGC	4 cut(s)	82, 287, 365, 866
SspMI	CTAG	3 cut(s)	413, 1277, 1306
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	3 cut(s)	301, 941, 1266
TaaI	ACNGT	3 cut(s)	190, 715, 761
TaqI	TCGA	4 cut(s)	448, 497, 780, 1242
TasI	AATT	8 cut(s)	29, 221, 430, 474, 518, 588, 1082, 1093
TatI	WGTACW	4 cut(s)	253, 271, 880, 929
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	4 cut(s)	416, 494, 654, 1282
Tru1I	TTAA	4 cut(s)	54, 473, 735, 1047
Tru9I	TTAA	4 cut(s)	54, 473, 735, 1047
TscAI	CASTG	3 cut(s)	116, 459, 1185
TseI	GCWGC	2 cut(s)	5, 242
TspDTI	ATGAA	4 cut(s)	678, 737, 907, 1095
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	3 cut(s)	116, 459, 1185
Tth111I	GACNNNGTC	1 cut(s)	761
VpaK11BI	GGWCC	3 cut(s)	284, 298, 902
XapI	RAATTY	3 cut(s)	29, 430, 1082
XceI	RCATGY	1 cut(s)	691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1259
XhoI	CTCGAG	1 cut(s)	447
XspI	CTAG	3 cut(s)	413, 1277, 1306
ZrmI	AGTACT	2 cut(s)	255, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.