Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Forward (+)

84934120 .. 84934657

Gene Structure 538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTGTTTACTCGTATTGGGTTGTGTGATTTCAATAGCTTTGACGGTGGGACTAATAATAGGAGTTCCTGCATTGGAATTGCCCAACAATGCGTATGCAGCTACCCGAGTGCTGCCTGATCTGGCTGTACTGATCTCTGGACCGCCAATAAAGGACCCTGGGGCATTGTTGAGATATGCTCTGCCTATTGATAACAAGGCTATCAGGGAGGTACAAAAGCCACTTGAAGATATCACAGAGAGTCTCAAGATAGCTGGAGTCAAGGCACTAGATTCAAATGAGAGGAATTTGAGGCAGGCGTCTCGAGCACTGAAGCAAGGGAAGTCTTTAATTGTGACTGGATTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

116

Amino Acids

12.25

Weight (kDa)

9.06

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	52 - 115	5.5e-23	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	2 cut(s)	129, 213
AgsI	TTSAA	3 cut(s)	33, 227, 276
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	38, 101, 254, 347
AluI	AGCT	4 cut(s)	38, 101, 254, 347
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	2 cut(s)	248, 306
Ama87I	CYCGRG	2 cut(s)	105, 303
ApeKI	GCWGC	2 cut(s)	98, 112
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	140, 154
AvaI	CYCGRG	2 cut(s)	105, 303
AvaII	GGWCC	2 cut(s)	140, 154
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	99, 110
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	248, 306
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	2 cut(s)	99, 113
BlsI	GCNGC	2 cut(s)	100, 114
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	2 cut(s)	140, 154
BmeT110I	CYCGRG	2 cut(s)	105, 303
BmgT120I	GGNCC	2 cut(s)	140, 154
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	157, 158
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	157, 158
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	99, 110
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	2 cut(s)	105, 303
BslFI	GGGAC	1 cut(s)	63
BsmAI	GTCTC	2 cut(s)	248, 306
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	63
BsoBI	CYCGRG	2 cut(s)	105, 303
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	118, 132
BspACI	CCGC	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	157, 158
BssMI	GATC	2 cut(s)	118, 132
BssNI	GRCGYC	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	121, 135
BstMAI	GTCTC	2 cut(s)	248, 306
BstMBI	GATC	2 cut(s)	118, 132
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 305
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	99, 110
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	140, 154
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	128, 212
CviJI	RGCY	7 cut(s)	38, 101, 125, 200, 220, 254, 347
CviKI_1	RGCY	7 cut(s)	38, 101, 125, 200, 220, 254, 347
CviQI	GTAC	2 cut(s)	128, 212
DpnI	GATC	2 cut(s)	120, 134
DpnII	GATC	2 cut(s)	118, 132
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	140, 154
Eco57I	CTGAAG	1 cut(s)	332
Eco88I	CYCGRG	2 cut(s)	105, 303
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	306
FaiI	YATR	2 cut(s)	96, 177
FaqI	GGGAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	99, 113
Fsp4HI	GCNGC	2 cut(s)	99, 113
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	2 cut(s)	99, 113
GsuI	CTGGAG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	299
HinfI	GANTC	3 cut(s)	241, 258, 272
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188III	TCNNGA	3 cut(s)	138, 247, 303
Hpy8I	GTNNAC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	71, 98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 305
Hsp92I	GRCGYC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	118, 132
Lsp1109I	GCAGC	2 cut(s)	99, 110
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	2 cut(s)	120, 134
MboI	GATC	2 cut(s)	118, 132
MboII	GAAGA	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	3 cut(s)	77, 286, 330
MlyI	GAGTC	2 cut(s)	250, 267
MnlI	CCTC	3 cut(s)	202, 276, 285
MseI	TTAA	2 cut(s)	329, 349
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	98, 305
NdeII	GATC	2 cut(s)	118, 132
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	303
PasI	CCCWGGG	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	100, 114
PleI	GAGTC	2 cut(s)	249, 266
PpsI	GAGTC	2 cut(s)	249, 266
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	140, 154
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	129, 213
RsaNI	GTAC	2 cut(s)	128, 212
SaqAI	TTAA	2 cut(s)	329, 349
SatI	GCNGC	2 cut(s)	99, 113
Sau3AI	GATC	2 cut(s)	118, 132
Sau96I	GGNCC	2 cut(s)	140, 154
SchI	GAGTC	2 cut(s)	250, 267
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	5 cut(s)	40, 103, 213, 256, 349
Sfr274I	CTCGAG	1 cut(s)	303
SinI	GGWCC	2 cut(s)	140, 154
SlaI	CTCGAG	1 cut(s)	303
SmlI	CTYRAG	2 cut(s)	245, 303
SmoI	CTYRAG	2 cut(s)	245, 303
Sse9I	AATT	3 cut(s)	77, 286, 330
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	77, 286, 330
TatI	WGTACW	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	329, 349
Tru9I	TTAA	2 cut(s)	329, 349
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	98, 112
Tsp45I	GTSAC	1 cut(s)	334
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	2 cut(s)	140, 154
XapI	RAATTY	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	303
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.