MD09G1035000.v1.1

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
2133033 .. 2135875
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1035000.v1.1.491

Sequence Viewer

Length: 1338 bp
ATGGCTGCCCTCCTCTCCTGCCACTACTCTGCTGCTTCTCCAGCTTCCTCCTCCTCCAAATTCTTCAGCGGCCACCGCACTCCCTTCTCAATTCCCCACAACCACCTTGCAACCCGCCGTTCTTCCCCACGCTCTGTCCAATGCCAGATCCACAACCAACAGCAGAAAGGGAAGTCATTCTCCATCAAGGAGTGCGCGATTTCGATAGCATTGGCGGTGGGATTAGTAACAGGAGTTCCTGCATTGGATTGGACTAGCAATGCCTTTGCAGCGGCTAATCCAGCGGTGCCTGATGTGTCTGTACTGATCTCTGGACCGCCGATAAAGGACCCGGGGGCATTGCTGAGATACGCTCTGCCTATTGATAATAAAGCTATCAGGGAAGTACAGAAACCGCTTGAAGATATCACTGAGAGTCTCAAGGTAGCTGGGGTCAGAGCACTCGATTCTGTTGAGAGGAATTTGAGGCAGGCATCTCGAGCTCTGACGCAGGGGAAGTCTTTAATTGTATCTGGATTAGCTGAATCGAAGAAGGAACACGGAGTTGAATTGCTTACCAAGCTGGAAGCTGGAATGAATGAGCTTCAACAGATTGTGGAGGATAGAGATAGAGATGCAGTAGCAGCAAAACAGAAGGAGCTGCTTCAATATGTCGGGGGTGTTGAAGAGGATATGGTGGACGGATTCCCTTACGAAGTGCCTGAAGAATACCAGAGCATGCCTCTGTTGAAGGGGAGAGCGACGGTGGATATGAAGGTCAAGGTTAAGGACAATCCCAGCCTTACTGATTGTGTCTTCCGTATTGTTCTTGATGGTTACAACGCCCCTGTGACTGCCGGGAACTTTGTAGACTTGGTGGAACGACACTTCTACGATGGCATGGAAATCCAAAGAGCGGATGGTTTTGTCGTACAAACTGGTGATCCTGAAGGACCTGCAGAGGGTTTCATAGATCCAAGTACAGAGAAAACCAGGACAATACCATTAGAAATCATGGTCGAGGGAGAGAAAGTACCTTTTTATGGAGCAACTTTGGAAGAGCTCGGGCTATACAAGACACAAACAAAGCTTCCGTTTAATGCGTTCGGAACAATGGCTATGGCGAGAGATGAATTTGAGGACAATTCTGCTTCCAGCCAAGTGTTCTGGCTGCTCAAGGAAAGTGAGCTAACTCCAAGCAATTCCAATATATTGGATGGGAGGTATGCAGTGTTTGGATATGTAACAGAGAACGAAGATTTCTTGGCAGATTTGAAAGTTGGTGATGTTATTGAATCAATCCAAGTAGTTTCTGGCCTGGAAAATCTTGCCAATCCAAGCTATAAGATTGCTGGATAG

Protein Analysis

446

Amino Acids

48.53

Weight (kDa)

4.98

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYP38_PsbQ-like PF21329 110 - 226 2.3e-45 Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase PF00160 266 - 424 5.3e-22 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 943
AccB1I GGYRCC 1 cut(s) 286
AccBSI CCGCTC 1 cut(s) 896
AccI GTMKAC 1 cut(s) 849
AccII CGCG 1 cut(s) 197
AciI CCGC 9 cut(s) 69, 76, 115, 215, 272, 284, 317, 395, 896
AclWI GGATC 3 cut(s) 142, 917, 947
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 59, 460, 1112
AcuI CTGAAG 3 cut(s) 49, 723, 948
AfaI GTAC 5 cut(s) 303, 387, 912, 961, 1014
AfiI CCNNNNNNNGG 3 cut(s) 895, 941, 1022
AgsI TTSAA 8 cut(s) 401, 548, 587, 647, 665, 730, 1255, 1274
AjnI CCWGG 2 cut(s) 971, 1296
Alw21I GWGCWC 3 cut(s) 442, 484, 1044
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 3 cut(s) 142, 917, 947
Ama87I CYCGRG 3 cut(s) 331, 477, 1043
AoxI GGCC 2 cut(s) 70, 1294
ApeKI GCWGC 6 cut(s) 5, 32, 269, 623, 640, 1150
ApoI RAATTY 3 cut(s) 59, 460, 1112
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 314, 328, 932
AsuC2I CCSGG 3 cut(s) 332, 333, 838
AsuHPI GGTGA 2 cut(s) 932, 1274
AvaI CYCGRG 3 cut(s) 331, 477, 1043
AvaII GGWCC 3 cut(s) 314, 328, 932
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 2 cut(s) 484, 1044
BbsI GAAGAC 1 cut(s) 787
Bbv12I GWGCWC 3 cut(s) 442, 484, 1044
BbvI GCAGC 5 cut(s) 19, 281, 627, 635, 1137
BccI CCATC 5 cut(s) 191, 806, 869, 893, 1190
BceAI ACGGC 1 cut(s) 102
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 973, 1298
BcnI CCSGG 3 cut(s) 332, 333, 838
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 936
BfuAI ACCTGC 1 cut(s) 943
BisI GCNGC 8 cut(s) 6, 33, 70, 270, 273, 624, 641, 1151
BlsI GCNGC 8 cut(s) 7, 34, 71, 271, 274, 625, 642, 1152
Bme1390I CCNGG 5 cut(s) 332, 333, 838, 973, 1298
Bme18I GGWCC 3 cut(s) 314, 328, 932
BmeT110I CYCGRG 3 cut(s) 331, 477, 1043
BmgT120I GGNCC 3 cut(s) 314, 328, 932
BmiI GGNNCC 2 cut(s) 288, 330
BmrFI CCNGG 5 cut(s) 332, 333, 838, 973, 1298
BmsI GCATC 2 cut(s) 482, 604
BpiI GAAGAC 1 cut(s) 787
BplI GAGNNNNNCTC 4 cut(s) 337, 369, 706, 738
BpmI CTGGAG 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 404, 1139
BpuMI CCSGG 3 cut(s) 332, 333, 838
BsaJI CCNNGG 2 cut(s) 331, 332
BsaXI ACNNNNNCTCC 2 cut(s) 996, 1026
Bsc4I CCNNNNNNNGG 3 cut(s) 895, 941, 1022
Bse1I ACTGG 1 cut(s) 922
Bse3DI GCAATG 2 cut(s) 265, 338
BseBI CCWGG 2 cut(s) 973, 1298
BseDI CCNNGG 2 cut(s) 331, 332
BseGI GGATG 2 cut(s) 904, 1201
BseLI CCNNNNNNNGG 3 cut(s) 895, 941, 1022
BseMI GCAATG 2 cut(s) 265, 338
BseMII CTCAG 2 cut(s) 335, 402
BseNI ACTGG 1 cut(s) 922
BseRI GAGGAG 2 cut(s) 40, 43
BseXI GCAGC 5 cut(s) 19, 281, 627, 635, 1137
BseYI CCCAGC 2 cut(s) 428, 776
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 2 cut(s) 72, 1296
BshNI GGYRCC 1 cut(s) 286
BsiHKAI GWGCWC 3 cut(s) 442, 484, 1044
BsiHKCI CYCGRG 3 cut(s) 331, 477, 1043
BsiSI CCGG 2 cut(s) 332, 837
BslI CCNNNNNNNGG 3 cut(s) 895, 941, 1022
BsmAI GTCTC 1 cut(s) 422
BsnI GGCC 2 cut(s) 72, 1296
BsoBI CYCGRG 3 cut(s) 331, 477, 1043
Bsp1286I GDGCHC 3 cut(s) 442, 484, 1044
Bsp143I GATC 4 cut(s) 147, 306, 922, 952
BspACI CCGC 9 cut(s) 69, 76, 115, 215, 272, 284, 317, 395, 896
BspANI GGCC 2 cut(s) 72, 1296
BspCNI CTCAG 2 cut(s) 336, 403
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 2 cut(s) 288, 330
BspMAI CTGCAG 1 cut(s) 940
BspMI ACCTGC 1 cut(s) 943
BspPI GGATC 3 cut(s) 142, 917, 947
BspQI GCTCTTC 1 cut(s) 1032
BspT107I GGYRCC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 896
BsrDI GCAATG 2 cut(s) 265, 338
BsrI ACTGG 1 cut(s) 922
BssECI CCNNGG 2 cut(s) 331, 332
BssMI GATC 4 cut(s) 147, 306, 922, 952
Bst2UI CCWGG 2 cut(s) 973, 1298
Bst4CI ACNGT 1 cut(s) 745
Bst6I CTCTTC 2 cut(s) 660, 1032
BstC8I GCNNGC 2 cut(s) 471, 719
BstDEI CTNAG 2 cut(s) 344, 411
BstF5I GGATG 2 cut(s) 904, 1201
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 4 cut(s) 150, 309, 925, 955
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 4 cut(s) 147, 306, 922, 952
BstMWI GCNNNNNNNGC 7 cut(s) 41, 75, 269, 281, 479, 559, 623
BstNI CCWGG 2 cut(s) 973, 1298
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 5 cut(s) 330, 331, 836, 971, 1296
BstSFI CTRYAG 1 cut(s) 936
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 5 cut(s) 19, 281, 627, 635, 1137
BstV2I GAAGAC 1 cut(s) 787
BstX2I RGATCY 2 cut(s) 147, 952
BstXI CCANNNNNNTGG 1 cut(s) 1192
BstYI RGATCY 2 cut(s) 147, 952
BsuRI GGCC 2 cut(s) 72, 1296
BtsCI GGATG 2 cut(s) 904, 1201
BtsI GCAGTG 1 cut(s) 1215
BtsIMutI CAGTG 2 cut(s) 408, 1215
BveI ACCTGC 1 cut(s) 943
Cac8I GCNNGC 2 cut(s) 471, 719
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 3 cut(s) 314, 328, 932
Cfr9I CCCGGG 1 cut(s) 331
CseI GACGC 1 cut(s) 496
Csp6I GTAC 5 cut(s) 302, 386, 911, 960, 1013
CviAII CATG 3 cut(s) 718, 880, 994
CviQI GTAC 5 cut(s) 302, 386, 911, 960, 1013
DdeI CTNAG 2 cut(s) 344, 411
DpnI GATC 4 cut(s) 149, 308, 924, 954
DpnII GATC 4 cut(s) 147, 306, 922, 952
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 660, 1032
EarI CTCTTC 2 cut(s) 660, 1032
Ecl136II GAGCTC 2 cut(s) 482, 1042
Eco24I GRGCYC 2 cut(s) 484, 1044
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 3 cut(s) 314, 328, 932
Eco53kI GAGCTC 2 cut(s) 482, 1042
Eco57I CTGAAG 3 cut(s) 49, 723, 948
Eco88I CYCGRG 3 cut(s) 331, 477, 1043
EcoICRI GAGCTC 2 cut(s) 482, 1042
EcoO109I RGGNCCY 2 cut(s) 328, 932
EcoRII CCWGG 2 cut(s) 971, 1296
EcoRV GATATC 1 cut(s) 406
EcoT38I GRGCYC 2 cut(s) 484, 1044
FaeI CATG 3 cut(s) 721, 883, 997
FatI CATG 3 cut(s) 717, 879, 993
FauI CCCGC 1 cut(s) 122
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 8 cut(s) 6, 33, 70, 270, 273, 624, 641, 1151
FokI GGATG 2 cut(s) 911, 1208
FriOI GRGCYC 2 cut(s) 484, 1044
Fsp4HI GCNGC 8 cut(s) 6, 33, 70, 270, 273, 624, 641, 1151
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 196
GluI GCNGC 8 cut(s) 6, 33, 70, 270, 273, 624, 641, 1151
GsaI CCCAGC 2 cut(s) 432, 780
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 2 cut(s) 72, 1296
HapII CCGG 2 cut(s) 332, 837
HgaI GACGC 1 cut(s) 496
HhaI GCGC 1 cut(s) 197
Hin1II CATG 3 cut(s) 721, 883, 997
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 1067
HinfI GANTC 5 cut(s) 415, 446, 524, 684, 1274
HpaII CCGG 2 cut(s) 332, 837
HphI GGTGA 2 cut(s) 932, 1274
Hpy166II GTNNAC 2 cut(s) 679, 850
Hpy188I TCNGA 3 cut(s) 437, 486, 1088
Hpy188III TCNNGA 5 cut(s) 312, 477, 513, 809, 926
Hpy8I GTNNAC 2 cut(s) 679, 850
Hpy99I CGWCG 1 cut(s) 745
HpyAV CCTTC 6 cut(s) 94, 526, 628, 724, 748, 923
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4V TGCA 6 cut(s) 110, 242, 269, 617, 938, 1208
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 75, 269, 281, 479, 559, 623
HpyF3I CTNAG 2 cut(s) 344, 411
Hsp92II CATG 3 cut(s) 721, 883, 997
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 4 cut(s) 147, 306, 922, 952
LguI GCTCTTC 1 cut(s) 1032
LmnI GCTCC 2 cut(s) 637, 1025
Lsp1109I GCAGC 5 cut(s) 19, 281, 627, 635, 1137
LweI GCATC 2 cut(s) 482, 604
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 4 cut(s) 226, 815, 829, 1222
MalI GATC 4 cut(s) 149, 308, 924, 954
MbiI CCGCTC 1 cut(s) 896
MboI GATC 4 cut(s) 147, 306, 922, 952
MboII GAAGA 9 cut(s) 55, 114, 413, 541, 677, 716, 787, 1049, 1247
MflI RGATCY 2 cut(s) 147, 952
MhlI GDGCHC 3 cut(s) 442, 484, 1044
MluCI AATT 8 cut(s) 59, 90, 460, 504, 548, 1112, 1123, 1180
MlyI GAGTC 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 3 cut(s) 503, 765, 1077
MspA1I CMGCKG 3 cut(s) 69, 272, 284
MspI CCGG 2 cut(s) 332, 837
MspR9I CCNGG 5 cut(s) 332, 333, 838, 973, 1298
MvaI CCWGG 2 cut(s) 973, 1298
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 7 cut(s) 41, 75, 269, 281, 479, 559, 623
NciI CCSGG 3 cut(s) 332, 333, 838
NdeII GATC 4 cut(s) 147, 306, 922, 952
NlaIII CATG 3 cut(s) 721, 883, 997
NlaIV GGNNCC 2 cut(s) 288, 330
NmuCI GTSAC 1 cut(s) 829
NspI RCATGY 1 cut(s) 721
PaeI GCATGC 1 cut(s) 721
PaeR7I CTCGAG 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 1032
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 4 cut(s) 446, 524, 684, 1274
PkrI GCNGC 8 cut(s) 7, 34, 71, 271, 274, 625, 642, 1152
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PpuMI RGGWCCY 2 cut(s) 328, 932
Psp124BI GAGCTC 2 cut(s) 484, 1044
Psp5II RGGWCCY 2 cut(s) 328, 932
Psp6I CCWGG 2 cut(s) 971, 1296
PspFI CCCAGC 2 cut(s) 428, 776
PspGI CCWGG 2 cut(s) 971, 1296
PspN4I GGNNCC 2 cut(s) 288, 330
PspPI GGNCC 3 cut(s) 314, 328, 932
PspPPI RGGWCCY 2 cut(s) 328, 932
PsrI GAACNNNNNNTAC 2 cut(s) 219, 251
PstI CTGCAG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 147, 952
RsaI GTAC 5 cut(s) 303, 387, 912, 961, 1014
RsaNI GTAC 5 cut(s) 302, 386, 911, 960, 1013
SacI GAGCTC 2 cut(s) 484, 1044
SapI GCTCTTC 1 cut(s) 1032
SaqAI TTAA 3 cut(s) 503, 765, 1077
SatI GCNGC 8 cut(s) 6, 33, 70, 270, 273, 624, 641, 1151
Sau3AI GATC 4 cut(s) 147, 306, 922, 952
Sau96I GGNCC 3 cut(s) 314, 328, 932
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 5 cut(s) 332, 333, 838, 973, 1298
SduI GDGCHC 3 cut(s) 442, 484, 1044
SfaNI GCATC 2 cut(s) 482, 604
SfcI CTRYAG 1 cut(s) 936
Sfr274I CTCGAG 1 cut(s) 477
SinI GGWCC 3 cut(s) 314, 328, 932
SlaI CTCGAG 1 cut(s) 477
SmaI CCCGGG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 419, 477, 1154
SmoI CTYRAG 3 cut(s) 419, 477, 1154
SphI GCATGC 1 cut(s) 721
Sse9I AATT 8 cut(s) 59, 90, 460, 504, 548, 1112, 1123, 1180
SsiI CCGC 9 cut(s) 69, 76, 115, 215, 272, 284, 317, 395, 896
SspMI CTAG 1 cut(s) 255
SstI GAGCTC 2 cut(s) 484, 1044
StyD4I CCNGG 5 cut(s) 330, 331, 836, 971, 1296
TaaI ACNGT 1 cut(s) 745
TaqI TCGA 5 cut(s) 203, 444, 478, 527, 999
TasI AATT 8 cut(s) 59, 90, 460, 504, 548, 1112, 1123, 1180
TatI WGTACW 3 cut(s) 301, 385, 959
TauI GCSGC 2 cut(s) 72, 275
TfiI GAWTC 4 cut(s) 446, 524, 684, 1274
Tru1I TTAA 3 cut(s) 503, 765, 1077
Tru9I TTAA 3 cut(s) 503, 765, 1077
TscAI CASTG 2 cut(s) 415, 1215
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 6 cut(s) 5, 32, 269, 623, 640, 1150
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 4 cut(s) 590, 767, 937, 1125
TspGWI ACGGA 4 cut(s) 555, 696, 788, 1062
TspMI CCCGGG 1 cut(s) 331
TspRI CASTG 2 cut(s) 415, 1215
VpaK11BI GGWCC 3 cut(s) 314, 328, 932
XapI RAATTY 3 cut(s) 59, 460, 1112
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 2 cut(s) 896, 1289
XhoI CTCGAG 1 cut(s) 477
XmaI CCCGGG 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 849
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.