Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007220

Physical Location & Seq

Genomic Coordinates Forward (+)

85047264 .. 85048734

Gene Structure 1471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTGGATGGATTCCCTTATGAAGTGCCCGAAGAATACCAAAGCATGCCTCTATTGAAGGGGAGAGCAACTGTGGATATGAAGGTCAAGGTTAAGGATAATCCTAACCTTACTGACTGTGTCTTTCGTATTGTCCTCGATGGTTACAATGCTCCTGTAACTTCTGGAAACTTTGTGGACTTGGTGGAAAGACACTTTTATGATGGCATGGAAATCCAAAGAGCGGACGGATTTGTTGTACAAACTGGTGATCCTGAAGGACCTGCAGAGGGTTTCATTGATCCAAGTACTGAGAAGACCAGGACAATACCTTTAGAAATCTCTGTAGTTGGAGAGAAAGCACCCTTTTATGGAGCAACTTTGGAAGAACTGGGGCTATACAAGGCTCAGACAAAGCTTCCATTTAACGCATTTGGAACAATGGCAATGGCCCGAGATGAATTTGAGAACAATTCTGCTTCAAGCCAGATATTTTGGTTACTAAAGGAAAGTGAACTAACTCCCAGTAACGCCAATATATTGGATGGTCGGTATGCAGTGTTCGGATACATTACAGAAAATGAGGACTTTTTGGCAGATGTCAAGGTTGGTGATGTTATCGAGTCTATCCAAGTTGTTTCTGGCCTGGAAAATCTAGCGAATCCAAGCTACAAGATTGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

221

Amino Acids

24.4

Weight (kDa)

4.36

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	42 - 199	3.5e-22	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01480 AT3G01480
fragaria_vesca	FvH4_6g50590 FvH4_6g50590
malus_domestica	MD09G1035000.v1.1 MD17G1035100.v1.1
prunus_persica	Prupe.3G283500_v2.0.a1 Prupe.3G283500_v2.0.a1
pyrus_communis	pycom111g02790 pycom17g03240
rosa_chinensis	RchiOBHm_Chr2g0171281 RchiOBHm_Chr2g0171291 RchiOBHm_Chr2g0171361 RchiOBHm_Chr2g0171371 RchiOBHm_Chr2g0171381
rosa_laevigata	RLG00000022008
rosa_multiflora	Rmu_sc0007646.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080710
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627900 Rh2BG638400 Rh2CG607100 Rh2DG649400 Rh2DG655500
rosa_wichuraiana	Rw2G052010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	224
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	245, 275
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	240, 289
AfiI	CCNNNNNNNGG	3 cut(s)	223, 269, 350
AgsI	TTSAA	2 cut(s)	58, 462
AjnI	CCWGG	2 cut(s)	299, 624
AluBI	AGCT	2 cut(s)	397, 648
AluI	AGCT	2 cut(s)	397, 648
AlwI	GGATC	2 cut(s)	245, 275
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	2 cut(s)	429, 622
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	260, 430
AsuHPI	GGTGA	2 cut(s)	260, 602
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	302
BccI	CCATC	4 cut(s)	2, 134, 197, 518
BciT130I	CCWGG	2 cut(s)	301, 626
BciVI	GTATCC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	635, 664
BfmI	CTRYAG	2 cut(s)	264, 324
BfuAI	ACCTGC	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	539
BmcAI	AGTACT	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	301, 626
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	260, 430
BmrFI	CCNGG	2 cut(s)	301, 626
BmrI	ACTGGG	2 cut(s)	380, 498
BmuI	ACTGGG	2 cut(s)	380, 498
BpiI	GAAGAC	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 269, 350
Bse1I	ACTGG	3 cut(s)	250, 375, 504
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	301, 626
BseGI	GGATG	2 cut(s)	13, 529
BseLI	CCNNNNNNNGG	3 cut(s)	223, 269, 350
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	282, 401
BseNI	ACTGG	3 cut(s)	250, 375, 504
BseSI	GKGCMC	1 cut(s)	30
BshFI	GGCC	2 cut(s)	431, 624
BsiHKCI	CYCGRG	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	223, 269, 350
BsnI	GGCC	2 cut(s)	431, 624
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	250, 280
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	431, 624
BspCNI	CTCAG	2 cut(s)	283, 400
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	245, 275
BsrBI	CCGCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	432
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	250, 375, 504
BssMI	GATC	2 cut(s)	250, 280
Bst2UI	CCWGG	2 cut(s)	301, 626
Bst4CI	ACNGT	2 cut(s)	73, 119
BstAUI	TGTACA	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	47, 661
BstDEI	CTNAG	2 cut(s)	291, 387
BstF5I	GGATG	2 cut(s)	13, 529
BstKTI	GATC	2 cut(s)	253, 283
BstMBI	GATC	2 cut(s)	250, 280
BstNI	CCWGG	2 cut(s)	301, 626
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	299, 624
BstSFI	CTRYAG	2 cut(s)	264, 324
BstSLI	GKGCMC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	520
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	431, 624
BtsCI	GGATG	2 cut(s)	13, 529
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	47, 661
Cfr13I	GGNCC	2 cut(s)	260, 430
Csp6I	GTAC	2 cut(s)	239, 288
CviAII	CATG	2 cut(s)	46, 208
CviJI	RGCY	8 cut(s)	376, 386, 397, 431, 465, 624, 648, 663
CviKI_1	RGCY	8 cut(s)	376, 386, 397, 431, 465, 624, 648, 663
CviQI	GTAC	2 cut(s)	239, 288
DdeI	CTNAG	2 cut(s)	291, 387
DpnI	GATC	2 cut(s)	252, 282
DpnII	GATC	2 cut(s)	250, 280
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	299, 624
FaeI	CATG	2 cut(s)	49, 211
FaiI	YATR	9 cut(s)	21, 47, 80, 201, 209, 351, 379, 518, 534
FatI	CATG	2 cut(s)	45, 207
FokI	GGATG	2 cut(s)	20, 536
FspBI	CTAG	2 cut(s)	635, 664
HaeIII	GGCC	2 cut(s)	431, 624
Hin1II	CATG	2 cut(s)	49, 211
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	3 cut(s)	12, 602, 640
HphI	GGTGA	2 cut(s)	260, 602
Hpy166II	GTNNAC	2 cut(s)	178, 494
Hpy188I	TCNGA	2 cut(s)	390, 545
Hpy188III	TCNNGA	2 cut(s)	165, 254
Hpy8I	GTNNAC	2 cut(s)	178, 494
HpyAV	CCTTC	3 cut(s)	52, 76, 251
HpyCH4III	ACNGT	2 cut(s)	73, 119
HpyCH4V	TGCA	2 cut(s)	266, 536
HpyF3I	CTNAG	2 cut(s)	291, 387
Hsp92II	CATG	2 cut(s)	49, 211
Kzo9I	GATC	2 cut(s)	250, 280
LmnI	GCTCC	2 cut(s)	157, 353
MaeI	CTAG	2 cut(s)	635, 664
MaeIII	GTNAC	4 cut(s)	143, 157, 477, 506
MalI	GATC	2 cut(s)	252, 282
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	2 cut(s)	250, 280
MboII	GAAGA	3 cut(s)	44, 307, 377
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	440, 451
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	4 cut(s)	60, 146, 262, 556
MseI	TTAA	2 cut(s)	93, 405
MslI	CAYNNNNRTG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	301, 626
MvaI	CCWGG	2 cut(s)	301, 626
NdeII	GATC	2 cut(s)	250, 280
NlaIII	CATG	2 cut(s)	49, 211
NspI	RCATGY	1 cut(s)	49
PaeI	GCATGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	12, 640
PflFI	GACNNNGTC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	299, 624
PspGI	CCWGG	2 cut(s)	299, 624
PspPI	GGNCC	2 cut(s)	260, 430
PspPPI	RGGWCCY	1 cut(s)	260
PsrI	GAACNNNNNNTAC	2 cut(s)	524, 556
PstI	CTGCAG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	240, 289
RsaNI	GTAC	2 cut(s)	239, 288
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	93, 405
Sau3AI	GATC	2 cut(s)	250, 280
Sau96I	GGNCC	2 cut(s)	260, 430
ScaI	AGTACT	1 cut(s)	289
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	2 cut(s)	301, 626
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	87, 93, 111, 265, 313, 399, 588, 650
SfcI	CTRYAG	2 cut(s)	264, 324
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	198
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	440, 451
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	635, 664
StyD4I	CCNGG	2 cut(s)	299, 624
TaaI	ACNGT	2 cut(s)	73, 119
TaqI	TCGA	2 cut(s)	138, 600
TasI	AATT	2 cut(s)	440, 451
TatI	WGTACW	2 cut(s)	238, 287
TfiI	GAWTC	2 cut(s)	12, 640
Tru1I	TTAA	2 cut(s)	93, 405
Tru9I	TTAA	2 cut(s)	93, 405
TscAI	CASTG	1 cut(s)	543
TspDTI	ATGAA	4 cut(s)	36, 95, 265, 453
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	543
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XspI	CTAG	2 cut(s)	635, 664
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.